Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0009654

Physical Location & Seq

Genomic Coordinates Forward (+)

18470922 .. 18473182

Gene Structure 2261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G188600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGAAAGTGGTAAAGATTGAATTTTGGTGCTTCTCACCCGCCAATTTGTTGAGAATCTTATGTCAGAGTTGTTGTGATGAATGTAGAGGTTGTGTGAATTGTTCTGTTGTACAAGGAACAATGGAAAGCAAGGCTAACAATATATCATTCGATTCGGATGAGAGCGAAAGGTGTTTGGAATTTGAAAGCTGTGATGAGCATTTATTGATTGATGATGATAAGCTTCCAAAGGACATTGATTTATGCTCACTTGAAGTTGATAAGATCATACAACAGCCTAATGCAAGCTTGCCTTTGATGGGCAATGCTGTAGAGCCATACATTGGAATGGGGTTCAAGTCTAGAGACGATGCTCGAGACTTTTATATTGCTTATGGCAGGCATTCTGGGTTTACAGTAAGGATTCATCACAACCGGCGTTCGAGGATGAATAACATGGTTATTGGCCAAGATTTTGTTTGTTCTAGAGAGGGTTTTCGGGATAAGAAATATGTATGCAGGGAAGATAGAGTTCTTCCTCCACCACCTGTCACCAGAGAAGGCTGTGCTGCAATGCTGAGGGTAGCTTTAAGAGATGGGGAGAAGTGGGTGGTTACCAAGTTTGTAAAAGAACATAATCACACATTAATGGCTCCAAGTAAAGTTCCATGGCGAGGATTTGGGAAAAACTTAATTAGTGAGGATGAGAAGGATCAGAAAATTAGGGATCTTACAATTGAACTTAGCAATGAGAGACAGCGATGTAAACGCCGATGTGCAGCTTATCAGGAACAAATAAGTATGCTTTTGAAAGATATCCAAGAGCATAGTGATCACTTGTCAACAAGAGTTCAAGATATAGTAAGGAACATTAGGGAACTTGAGAATGAGCGTTGTGTAGATTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1

Protein Analysis

296

Amino Acids

34.14

Weight (kDa)

6.27

Isoelectric Point (pI)

49.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009654)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g17603 FvH4_2g17603 FvH4_2g17603
malus_domestica	MD04G1041900.v1.1
prunus_persica	Prupe.1G195700_v2.0.a1 Prupe.1G195700_v2.0.a1 Prupe.8G188600_v2.0.a1
pyrus_communis	pycom04g03690 pycom13g28370 pycom275g00050
rosa_chinensis	RchiOBHm_Chr6g0282581
rosa_laevigata	RLG00000012884
rosa_multiflora	Rmu_co8454661.1_g000001 Rmu_sc0000283.1_g000004 Rmu_sc0005697.1_g000005
rosa_roxburghii	Rroxscaffold_7G00186250
rosa_rugosa	Rorug06G0147800
rosa_samantha	Rh6AG261000 Rh6BG264100 Rh6CG263300 Rh6DG255200
rosa_wichuraiana	Rw6G022570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	323
AciI	CCGC	1 cut(s)	39
AclWI	GGATC	2 cut(s)	699, 714
AcoI	YGGCCR	1 cut(s)	445
AcsI	RAATTY	2 cut(s)	20, 179
AfaI	GTAC	1 cut(s)	111
AfiI	CCNNNNNNNGG	3 cut(s)	299, 323, 653
AgsI	TTSAA	7 cut(s)	20, 185, 254, 337, 719, 790, 833
AluBI	AGCT	5 cut(s)	189, 223, 288, 566, 761
AluI	AGCT	5 cut(s)	189, 223, 288, 566, 761
Alw26I	GTCTC	3 cut(s)	339, 351, 727
AlwI	GGATC	2 cut(s)	699, 714
Ama87I	CYCGRG	1 cut(s)	354
AoxI	GGCC	1 cut(s)	445
ApeKI	GCWGC	2 cut(s)	548, 758
ApoI	RAATTY	2 cut(s)	20, 179
AseI	ATTAAT	1 cut(s)	626
AsuHPI	GGTGA	2 cut(s)	27, 523
AvaI	CYCGRG	1 cut(s)	354
BalI	TGGCCA	1 cut(s)	447
BbvCI	CCTCAGC	1 cut(s)	557
BbvI	GCAGC	2 cut(s)	535, 770
BccI	CCATC	2 cut(s)	292, 569
BclI	TGATCA	1 cut(s)	811
BcoDI	GTCTC	3 cut(s)	339, 351, 727
BfaI	CTAG	2 cut(s)	342, 465
BfmI	CTRYAG	1 cut(s)	309
BisI	GCNGC	2 cut(s)	549, 759
BlsI	GCNGC	2 cut(s)	550, 760
BmeT110I	CYCGRG	1 cut(s)	354
BmiI	GGNNCC	1 cut(s)	633
BmsI	GCATC	1 cut(s)	340
Bpu10I	CCTNAGC	1 cut(s)	557
BpuEI	CTTGAG	1 cut(s)	881
BsaJI	CCNNGG	1 cut(s)	647
Bsc4I	CCNNNNNNNGG	3 cut(s)	299, 323, 653
Bse118I	RCCGGY	1 cut(s)	414
Bse3DI	GCAATG	3 cut(s)	310, 558, 733
BseDI	CCNNGG	1 cut(s)	647
BseGI	GGATG	3 cut(s)	163, 432, 688
BseLI	CCNNNNNNNGG	3 cut(s)	299, 323, 653
BseMI	GCAATG	3 cut(s)	310, 558, 733
BseMII	CTCAG	1 cut(s)	548
BseXI	GCAGC	2 cut(s)	535, 770
BsgI	GTGCAG	1 cut(s)	777
BshFI	GGCC	1 cut(s)	447
BsiHKCI	CYCGRG	1 cut(s)	354
BsiSI	CCGG	1 cut(s)	415
BslI	CCNNNNNNNGG	3 cut(s)	299, 323, 653
BsmAI	GTCTC	3 cut(s)	339, 351, 727
BsmBI	CGTCTC	1 cut(s)	339
BsmI	GAATGC	1 cut(s)	382
BsnI	GGCC	1 cut(s)	447
BsoBI	CYCGRG	1 cut(s)	354
Bsp1407I	TGTACA	1 cut(s)	109
Bsp143I	GATC	4 cut(s)	264, 691, 706, 811
Bsp19I	CCATGG	1 cut(s)	647
BspACI	CCGC	1 cut(s)	39
BspANI	GGCC	1 cut(s)	447
BspCNI	CTCAG	1 cut(s)	549
BspLI	GGNNCC	1 cut(s)	633
BspPI	GGATC	2 cut(s)	699, 714
BsrDI	GCAATG	3 cut(s)	310, 558, 733
BsrFI	RCCGGY	1 cut(s)	414
BsrGI	TGTACA	1 cut(s)	109
BssAI	RCCGGY	1 cut(s)	414
BssECI	CCNNGG	1 cut(s)	647
BssMI	GATC	4 cut(s)	264, 691, 706, 811
BssT1I	CCWWGG	1 cut(s)	647
Bst4CI	ACNGT	1 cut(s)	397
BstAUI	TGTACA	1 cut(s)	109
BstC8I	GCNNGC	3 cut(s)	286, 290, 380
BstDEI	CTNAG	2 cut(s)	557, 722
BstDSI	CCRYGG	1 cut(s)	647
BstEII	GGTNACC	1 cut(s)	592
BstF5I	GGATG	3 cut(s)	163, 432, 688
BstKTI	GATC	4 cut(s)	267, 694, 709, 814
BstMAI	GTCTC	3 cut(s)	339, 351, 727
BstMBI	GATC	4 cut(s)	264, 691, 706, 811
BstPI	GGTNACC	1 cut(s)	592
BstSFI	CTRYAG	1 cut(s)	309
BstV1I	GCAGC	2 cut(s)	535, 770
BstX2I	RGATCY	1 cut(s)	706
BstYI	RGATCY	1 cut(s)	706
BsuRI	GGCC	1 cut(s)	447
BtgI	CCRYGG	1 cut(s)	647
BtgZI	GCGATG	1 cut(s)	754
BtsCI	GGATG	3 cut(s)	163, 432, 688
Cac8I	GCNNGC	3 cut(s)	286, 290, 380
Cfr10I	RCCGGY	1 cut(s)	414
Csp6I	GTAC	1 cut(s)	110
CviAII	CATG	2 cut(s)	436, 648
CviQI	GTAC	1 cut(s)	110
DdeI	CTNAG	2 cut(s)	557, 722
DpnI	GATC	4 cut(s)	266, 693, 708, 813
DpnII	GATC	4 cut(s)	264, 691, 706, 811
EaeI	YGGCCR	1 cut(s)	445
Eco130I	CCWWGG	1 cut(s)	647
Eco32I	GATATC	1 cut(s)	796
Eco88I	CYCGRG	1 cut(s)	354
Eco91I	GGTNACC	1 cut(s)	592
EcoO65I	GGTNACC	1 cut(s)	592
EcoRV	GATATC	1 cut(s)	796
EcoT14I	CCWWGG	1 cut(s)	647
ErhI	CCWWGG	1 cut(s)	647
Esp3I	CGTCTC	1 cut(s)	339
FaeI	CATG	2 cut(s)	439, 651
FalI	AAGNNNNNCTT	2 cut(s)	277, 309
FatI	CATG	2 cut(s)	435, 647
FauI	CCCGC	1 cut(s)	46
FbaI	TGATCA	1 cut(s)	811
Fnu4HI	GCNGC	2 cut(s)	549, 759
FokI	GGATG	3 cut(s)	170, 439, 695
Fsp4HI	GCNGC	2 cut(s)	549, 759
FspBI	CTAG	2 cut(s)	342, 465
GluI	GCNGC	2 cut(s)	549, 759
HaeIII	GGCC	1 cut(s)	447
HapII	CCGG	1 cut(s)	415
Hin1II	CATG	2 cut(s)	439, 651
HincII	GTYRAC	1 cut(s)	822
HindII	GTYRAC	1 cut(s)	822
HindIII	AAGCTT	2 cut(s)	221, 286
HinfI	GANTC	4 cut(s)	54, 152, 403, 881
HpaII	CCGG	1 cut(s)	415
HphI	GGTGA	2 cut(s)	27, 523
Hpy166II	GTNNAC	3 cut(s)	393, 746, 822
Hpy188I	TCNGA	3 cut(s)	66, 157, 696
Hpy188III	TCNNGA	6 cut(s)	342, 356, 465, 479, 767, 833
Hpy8I	GTNNAC	3 cut(s)	393, 746, 822
HpyAV	CCTTC	2 cut(s)	533, 682
HpyCH4III	ACNGT	1 cut(s)	397
HpyCH4V	TGCA	4 cut(s)	284, 498, 551, 758
HpyF3I	CTNAG	2 cut(s)	557, 722
Hsp92II	CATG	2 cut(s)	439, 651
Ksp22I	TGATCA	1 cut(s)	811
Kzo9I	GATC	4 cut(s)	264, 691, 706, 811
LmnI	GCTCC	1 cut(s)	637
LpnPI	CCDG	7 cut(s)	364, 372, 428, 484, 540, 547, 752
Lsp1109I	GCAGC	2 cut(s)	535, 770
LweI	GCATC	1 cut(s)	340
MaeI	CTAG	2 cut(s)	342, 465
MaeIII	GTNAC	2 cut(s)	529, 592
MalI	GATC	4 cut(s)	266, 693, 708, 813
MboI	GATC	4 cut(s)	264, 691, 706, 811
MboII	GAAGA	2 cut(s)	506, 515
MfeI	CAATTG	1 cut(s)	714
MflI	RGATCY	1 cut(s)	706
MlsI	TGGCCA	1 cut(s)	447
MluCI	AATT	7 cut(s)	20, 43, 97, 179, 672, 699, 714
MluNI	TGGCCA	1 cut(s)	447
MnlI	CCTC	7 cut(s)	80, 417, 463, 528, 552, 647, 673
Mox20I	TGGCCA	1 cut(s)	447
MscI	TGGCCA	1 cut(s)	447
MseI	TTAA	3 cut(s)	569, 626, 671
MslI	CAYNNNNRTG	2 cut(s)	326, 626
Msp20I	TGGCCA	1 cut(s)	447
MspI	CCGG	1 cut(s)	415
MunI	CAATTG	1 cut(s)	714
Mva1269I	GAATGC	1 cut(s)	382
NcoI	CCATGG	1 cut(s)	647
NdeII	GATC	4 cut(s)	264, 691, 706, 811
NlaIII	CATG	2 cut(s)	439, 651
NlaIV	GGNNCC	1 cut(s)	633
NmuCI	GTSAC	1 cut(s)	529
PaeR7I	CTCGAG	1 cut(s)	354
PctI	GAATGC	1 cut(s)	382
PfeI	GAWTC	4 cut(s)	54, 152, 403, 881
PflMI	CCANNNNNTGG	1 cut(s)	323
PkrI	GCNGC	2 cut(s)	550, 760
PshBI	ATTAAT	1 cut(s)	626
PspEI	GGTNACC	1 cut(s)	592
PspN4I	GGNNCC	1 cut(s)	633
PsuI	RGATCY	1 cut(s)	706
RsaI	GTAC	1 cut(s)	111
RsaNI	GTAC	1 cut(s)	110
RseI	CAYNNNNRTG	2 cut(s)	326, 626
SaqAI	TTAA	3 cut(s)	569, 626, 671
SatI	GCNGC	2 cut(s)	549, 759
Sau3AI	GATC	4 cut(s)	264, 691, 706, 811
SetI	ASST	8 cut(s)	91, 173, 191, 225, 290, 529, 568, 763
SfaNI	GCATC	1 cut(s)	340
SfcI	CTRYAG	1 cut(s)	309
Sfr274I	CTCGAG	1 cut(s)	354
SlaI	CTCGAG	1 cut(s)	354
SmiMI	CAYNNNNRTG	2 cut(s)	326, 626
SmlI	CTYRAG	2 cut(s)	354, 860
SmoI	CTYRAG	2 cut(s)	354, 860
Sse9I	AATT	7 cut(s)	20, 43, 97, 179, 672, 699, 714
SsiI	CCGC	1 cut(s)	39
SspMI	CTAG	2 cut(s)	342, 465
StyI	CCWWGG	1 cut(s)	647
TaaI	ACNGT	1 cut(s)	397
TaqI	TCGA	3 cut(s)	150, 355, 422
TasI	AATT	7 cut(s)	20, 43, 97, 179, 672, 699, 714
TatI	WGTACW	1 cut(s)	109
TfiI	GAWTC	4 cut(s)	54, 152, 403, 881
Tru1I	TTAA	3 cut(s)	569, 626, 671
Tru9I	TTAA	3 cut(s)	569, 626, 671
TseFI	GTSAC	1 cut(s)	529
TseI	GCWGC	2 cut(s)	548, 758
Tsp45I	GTSAC	1 cut(s)	529
TspDTI	ATGAA	5 cut(s)	17, 93, 395, 443, 873
Van91I	CCANNNNNTGG	1 cut(s)	323
VspI	ATTAAT	1 cut(s)	626
XapI	RAATTY	2 cut(s)	20, 179
XbaI	TCTAGA	2 cut(s)	341, 464
XhoI	CTCGAG	1 cut(s)	354
XspI	CTAG	2 cut(s)	342, 465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.