RchiOBHm_Chr6g0282581

FAR1 DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0009654
Physical Location & Seq
Forward (+)
45836821 .. 45838583
1763 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25336

Sequence Viewer

Length: 735 bp
ATGGAAAGCGAGAGTAACAACAACAACAACAACCCATTTGATTCAGATGAGAGCCAAAGTTGTGAGCTTCCAAATGACATTGATTTGTGCTCAGGTGAAGTAGATAAGATTATAGAACTGTCTAATGGACGCTCACATTTGATGGGTAATCCCATTGAGCCGTACATAGGAATGGAGTTCAAGTCTAGAGACAGTGCTCGAGAGTTTTACATTGCTTATGGCAGGCACACTGGGTTTACAGTTAGGATTCATCACAACCGTCGTTCGAGGATGAATAACATGGTGATTGGCCAGGATTTCGTTTGCTCGAAAGAGGGTTTTCGTGACAAGAAGTATGTGTACAGGGACAATAGAGTTCTTCCTCCACCGCCTGTGACAAGAGAAGGTTGTGCTGCAATGCTGAGGGTAGCTTTAAGAGATGGGGAAAAGTGGGTTGTTACCAAGTTTGTGAAGGAGCACAATCACACATTGATGTCTCCGAGTAAAGTTCCGTGGCGAGGATCTGGGAAAACCTTGATCAATGAGGATGAGAAGGATCGGAAAATTAGGGAGCTGACCATTGAACTGAGCAATGAGAGACAGCGATGTAAACGTAAGTGTGCAGCATATCAAGATCAATTGAATAGGCTTTTGAAAGATATCCAAGACCACAGTGATCACTTGTCAGAAAGAGTTCAAGACATAGTGAAGAACATAAGAGAACTAGAGAGCGAGCAATCTGAGGACTCAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1

Protein Analysis

244

Amino Acids

28.38

Weight (kDa)

6.27

Isoelectric Point (pI)

54.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 68 - 158 2.7e-25 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 368
AclWI GGATC 2 cut(s) 508, 543
AcoI YGGCCR 1 cut(s) 289
AfaI GTAC 2 cut(s) 164, 341
AfiI CCNNNNNNNGG 2 cut(s) 167, 497
AgsI TTSAA 5 cut(s) 181, 563, 622, 634, 677
AjnI CCWGG 1 cut(s) 291
AluBI AGCT 3 cut(s) 67, 410, 553
AluI AGCT 3 cut(s) 67, 410, 553
Alw21I GWGCWC 3 cut(s) 92, 199, 459
Alw26I GTCTC 3 cut(s) 183, 480, 571
AlwI GGATC 2 cut(s) 508, 543
Ama87I CYCGRG 1 cut(s) 198
AoxI GGCC 1 cut(s) 289
ApeKI GCWGC 2 cut(s) 392, 602
Asp700I GAANNNNTTC 1 cut(s) 672
AsuHPI GGTGA 2 cut(s) 107, 295
AvaI CYCGRG 1 cut(s) 198
BalI TGGCCA 1 cut(s) 291
BarI GAAGNNNNNNTAC 2 cut(s) 323, 355
Bbv12I GWGCWC 3 cut(s) 92, 199, 459
BbvCI CCTCAGC 1 cut(s) 401
BbvI GCAGC 2 cut(s) 379, 614
BccI CCATC 2 cut(s) 136, 413
BceAI ACGGC 1 cut(s) 145
BciT130I CCWGG 1 cut(s) 293
BclI TGATCA 2 cut(s) 516, 655
BcoDI GTCTC 3 cut(s) 183, 480, 571
BfaI CTAG 2 cut(s) 186, 704
BisI GCNGC 2 cut(s) 393, 603
BlsI GCNGC 2 cut(s) 394, 604
Bme1390I CCNGG 1 cut(s) 293
BmeT110I CYCGRG 1 cut(s) 198
BmrFI CCNGG 1 cut(s) 293
BmrI ACTGGG 1 cut(s) 240
BmuI ACTGGG 1 cut(s) 240
Bpu10I CCTNAGC 2 cut(s) 91, 401
BsaJI CCNNGG 1 cut(s) 491
BsaXI ACNNNNNCTCC 2 cut(s) 167, 197
Bsc4I CCNNNNNNNGG 2 cut(s) 167, 497
Bse1I ACTGG 1 cut(s) 235
Bse3DI GCAATG 3 cut(s) 210, 402, 577
BseBI CCWGG 1 cut(s) 293
BseDI CCNNGG 1 cut(s) 491
BseGI GGATG 2 cut(s) 276, 532
BseLI CCNNNNNNNGG 2 cut(s) 167, 497
BseMI GCAATG 3 cut(s) 210, 402, 577
BseMII CTCAG 4 cut(s) 105, 392, 557, 711
BseNI ACTGG 1 cut(s) 235
BseXI GCAGC 2 cut(s) 379, 614
BsgI GTGCAG 1 cut(s) 621
BshFI GGCC 1 cut(s) 291
BsiHKAI GWGCWC 3 cut(s) 92, 199, 459
BsiHKCI CYCGRG 1 cut(s) 198
BslFI GGGAC 1 cut(s) 359
BslI CCNNNNNNNGG 2 cut(s) 167, 497
BsmAI GTCTC 3 cut(s) 183, 480, 571
BsmFI GGGAC 1 cut(s) 359
BsnI GGCC 1 cut(s) 291
BsoBI CYCGRG 1 cut(s) 198
Bsp1286I GDGCHC 3 cut(s) 92, 199, 459
Bsp1407I TGTACA 1 cut(s) 339
Bsp143I GATC 5 cut(s) 500, 516, 535, 613, 655
BspACI CCGC 1 cut(s) 368
BspANI GGCC 1 cut(s) 291
BspCNI CTCAG 4 cut(s) 104, 393, 558, 712
BspPI GGATC 2 cut(s) 508, 543
BsrDI GCAATG 3 cut(s) 210, 402, 577
BsrGI TGTACA 1 cut(s) 339
BsrI ACTGG 1 cut(s) 235
BssECI CCNNGG 1 cut(s) 491
BssMI GATC 5 cut(s) 500, 516, 535, 613, 655
Bst2UI CCWGG 1 cut(s) 293
Bst4CI ACNGT 5 cut(s) 120, 194, 241, 260, 653
BstAUI TGTACA 1 cut(s) 339
BstC8I GCNNGC 2 cut(s) 224, 713
BstDEI CTNAG 5 cut(s) 91, 401, 566, 720, 727
BstDSI CCRYGG 1 cut(s) 491
BstF5I GGATG 2 cut(s) 276, 532
BstKTI GATC 5 cut(s) 503, 519, 538, 616, 658
BstMAI GTCTC 3 cut(s) 183, 480, 571
BstMBI GATC 5 cut(s) 500, 516, 535, 613, 655
BstNI CCWGG 1 cut(s) 293
BstSCI CCNGG 1 cut(s) 291
BstV1I GCAGC 2 cut(s) 379, 614
BstX2I RGATCY 1 cut(s) 500
BstYI RGATCY 1 cut(s) 500
BsuRI GGCC 1 cut(s) 291
BtgI CCRYGG 1 cut(s) 491
BtgZI GCGATG 1 cut(s) 598
BtsCI GGATG 2 cut(s) 276, 532
BtsIMutI CAGTG 3 cut(s) 199, 228, 658
Cac8I GCNNGC 2 cut(s) 224, 713
CseI GACGC 1 cut(s) 138
Csp6I GTAC 2 cut(s) 163, 340
CviAII CATG 1 cut(s) 280
CviJI RGCY 7 cut(s) 54, 67, 160, 291, 410, 553, 628
CviKI_1 RGCY 7 cut(s) 54, 67, 160, 291, 410, 553, 628
CviQI GTAC 2 cut(s) 163, 340
DdeI CTNAG 5 cut(s) 91, 401, 566, 720, 727
DpnI GATC 5 cut(s) 502, 518, 537, 615, 657
DpnII GATC 5 cut(s) 500, 516, 535, 613, 655
EaeI YGGCCR 1 cut(s) 289
Eco32I GATATC 1 cut(s) 640
Eco88I CYCGRG 1 cut(s) 198
EcoRII CCWGG 1 cut(s) 291
EcoRV GATATC 1 cut(s) 640
FaeI CATG 1 cut(s) 283
FaiI YATR 8 cut(s) 113, 167, 219, 281, 336, 607, 683, 695
FaqI GGGAC 1 cut(s) 359
FatI CATG 1 cut(s) 279
FbaI TGATCA 2 cut(s) 516, 655
Fnu4HI GCNGC 2 cut(s) 393, 603
FokI GGATG 2 cut(s) 283, 539
Fsp4HI GCNGC 2 cut(s) 393, 603
FspBI CTAG 2 cut(s) 186, 704
GluI GCNGC 2 cut(s) 393, 603
HaeIII GGCC 1 cut(s) 291
HgaI GACGC 1 cut(s) 138
Hin1II CATG 1 cut(s) 283
HinfI GANTC 3 cut(s) 41, 247, 725
HphI GGTGA 2 cut(s) 107, 295
Hpy166II GTNNAC 3 cut(s) 237, 340, 590
Hpy188I TCNGA 6 cut(s) 46, 480, 540, 667, 721, 730
Hpy188III TCNNGA 5 cut(s) 186, 200, 323, 611, 677
Hpy8I GTNNAC 3 cut(s) 237, 340, 590
Hpy99I CGWCG 1 cut(s) 264
HpyAV CCTTC 3 cut(s) 377, 445, 526
HpyCH4III ACNGT 5 cut(s) 120, 194, 241, 260, 653
HpyCH4IV ACGT 1 cut(s) 592
HpyCH4V TGCA 2 cut(s) 395, 602
HpyF3I CTNAG 5 cut(s) 91, 401, 566, 720, 727
HpySE526I ACGT 1 cut(s) 592
Hsp92II CATG 1 cut(s) 283
Ksp22I TGATCA 2 cut(s) 516, 655
Kzo9I GATC 5 cut(s) 500, 516, 535, 613, 655
LmnI GCTCC 2 cut(s) 454, 550
LpnPI CCDG 8 cut(s) 78, 208, 216, 278, 305, 328, 384, 489
Lsp1109I GCAGC 2 cut(s) 379, 614
MaeI CTAG 2 cut(s) 186, 704
MaeII ACGT 1 cut(s) 592
MaeIII GTNAC 4 cut(s) 14, 323, 373, 436
MalI GATC 5 cut(s) 502, 518, 537, 615, 657
MboI GATC 5 cut(s) 500, 516, 535, 613, 655
MboII GAAGA 2 cut(s) 350, 700
MfeI CAATTG 1 cut(s) 617
MflI RGATCY 1 cut(s) 500
MhlI GDGCHC 3 cut(s) 92, 199, 459
MlsI TGGCCA 1 cut(s) 291
MluCI AATT 2 cut(s) 543, 617
MluNI TGGCCA 1 cut(s) 291
MlyI GAGTC 1 cut(s) 719
MnlI CCTC 7 cut(s) 261, 307, 372, 396, 491, 517, 715
Mox20I TGGCCA 1 cut(s) 291
MroXI GAANNNNTTC 1 cut(s) 672
MscI TGGCCA 1 cut(s) 291
MseI TTAA 2 cut(s) 413, 733
MslI CAYNNNNRTG 2 cut(s) 170, 470
Msp20I TGGCCA 1 cut(s) 291
MspR9I CCNGG 1 cut(s) 293
MunI CAATTG 1 cut(s) 617
MvaI CCWGG 1 cut(s) 293
NdeII GATC 5 cut(s) 500, 516, 535, 613, 655
NlaIII CATG 1 cut(s) 283
NmuCI GTSAC 2 cut(s) 323, 373
PaeR7I CTCGAG 1 cut(s) 198
PdmI GAANNNNTTC 1 cut(s) 672
PfeI GAWTC 2 cut(s) 41, 247
PkrI GCNGC 2 cut(s) 394, 604
PleI GAGTC 1 cut(s) 719
PpsI GAGTC 1 cut(s) 719
Psp6I CCWGG 1 cut(s) 291
PspGI CCWGG 1 cut(s) 291
PsuI RGATCY 1 cut(s) 500
RsaI GTAC 2 cut(s) 164, 341
RsaNI GTAC 2 cut(s) 163, 340
RseI CAYNNNNRTG 2 cut(s) 170, 470
SaqAI TTAA 2 cut(s) 413, 733
SatI GCNGC 2 cut(s) 393, 603
Sau3AI GATC 5 cut(s) 500, 516, 535, 613, 655
SchI GAGTC 1 cut(s) 719
ScrFI CCNGG 1 cut(s) 293
SduI GDGCHC 3 cut(s) 92, 199, 459
SetI ASST 7 cut(s) 69, 97, 388, 412, 515, 555, 595
Sfr274I CTCGAG 1 cut(s) 198
SlaI CTCGAG 1 cut(s) 198
SmiMI CAYNNNNRTG 2 cut(s) 170, 470
SmlI CTYRAG 1 cut(s) 198
SmoI CTYRAG 1 cut(s) 198
Sse9I AATT 2 cut(s) 543, 617
SsiI CCGC 1 cut(s) 368
SspMI CTAG 2 cut(s) 186, 704
StyD4I CCNGG 1 cut(s) 291
TaaI ACNGT 5 cut(s) 120, 194, 241, 260, 653
TaiI ACGT 1 cut(s) 595
TaqI TCGA 3 cut(s) 199, 266, 308
TasI AATT 2 cut(s) 543, 617
TatI WGTACW 1 cut(s) 339
TfiI GAWTC 2 cut(s) 41, 247
Tru1I TTAA 2 cut(s) 413, 733
Tru9I TTAA 2 cut(s) 413, 733
TscAI CASTG 3 cut(s) 199, 235, 658
TseFI GTSAC 2 cut(s) 323, 373
TseI GCWGC 2 cut(s) 392, 602
Tsp45I GTSAC 2 cut(s) 323, 373
TspDTI ATGAA 2 cut(s) 239, 287
TspGWI ACGGA 1 cut(s) 480
TspRI CASTG 3 cut(s) 199, 235, 658
XbaI TCTAGA 1 cut(s) 185
XhoI CTCGAG 1 cut(s) 198
XmnI GAANNNNTTC 1 cut(s) 672
XspI CTAG 2 cut(s) 186, 704
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.