Rh6DG255200

FAR1 DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0009654
Physical Location & Seq
Forward (+)
44578670 .. 44579606
937 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG255200.1

Sequence Viewer

Length: 594 bp
ATGGGTAATCCCATTGAGCCGTACATAGGAATGGAGTTCAAGTCTAGAGACAGTGCTCGAGAGTTTTACATTGCTTATGGCAGGCACACTGGGTTTACAGTTAGGATTCATCACAACCGTCGTTCGAGGATGAATAACATGGTGATTGGCCAGGATTTCGTTTGCTCGAAAGAGGGTTTTCGTGACAAGAAGTATGTGTACAGGGACAATAGAGTTCTTCCTCCACCGCCTGTGACAAGAGAAGGTTGTGCTGCAATGCTGAGGGTAGCTTTAAGAGATGGGGAAAAGTGGGTTGTTACCAAGTTTGTGAAGGAGCACAATCACACATTGATGTCTCCGAGTAAAGTTCCGTGGCGAGGATCTGGGAAAACCTTGATCAATGAGGATGAGAAGGATCGGAAAATTAGGGAGCTGACCATTGAACTGAGCAATGAGAGACAGCGATGTAAACGTAAGTGTGCAGCATATCAAGATCAATTGAATAGGCTTTTGAAAGATATCCAAGACCACAGTGATCACTTGTCAGAAAGAGTTCAAGACATAGTGAAGAACATAAGAGAACTAGAGAGCGAGCAATCTGAGGACTCAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1

Protein Analysis

197

Amino Acids

23.19

Weight (kDa)

9.16

Isoelectric Point (pI)

50.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 21 - 111 1.6e-25 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 227
AclWI GGATC 2 cut(s) 367, 402
AcoI YGGCCR 1 cut(s) 148
AfaI GTAC 2 cut(s) 23, 200
AfiI CCNNNNNNNGG 2 cut(s) 26, 356
AgsI TTSAA 5 cut(s) 40, 422, 481, 493, 536
AjnI CCWGG 1 cut(s) 150
AluBI AGCT 2 cut(s) 269, 412
AluI AGCT 2 cut(s) 269, 412
Alw21I GWGCWC 2 cut(s) 58, 318
Alw26I GTCTC 3 cut(s) 42, 339, 430
AlwI GGATC 2 cut(s) 367, 402
Ama87I CYCGRG 1 cut(s) 57
AoxI GGCC 1 cut(s) 148
ApeKI GCWGC 2 cut(s) 251, 461
Asp700I GAANNNNTTC 1 cut(s) 531
AsuHPI GGTGA 1 cut(s) 154
AvaI CYCGRG 1 cut(s) 57
BalI TGGCCA 1 cut(s) 150
BarI GAAGNNNNNNTAC 2 cut(s) 182, 214
Bbv12I GWGCWC 2 cut(s) 58, 318
BbvCI CCTCAGC 1 cut(s) 260
BbvI GCAGC 2 cut(s) 238, 473
BccI CCATC 1 cut(s) 272
BceAI ACGGC 1 cut(s) 4
BciT130I CCWGG 1 cut(s) 152
BclI TGATCA 2 cut(s) 375, 514
BcoDI GTCTC 3 cut(s) 42, 339, 430
BfaI CTAG 2 cut(s) 45, 563
BisI GCNGC 2 cut(s) 252, 462
BlsI GCNGC 2 cut(s) 253, 463
Bme1390I CCNGG 1 cut(s) 152
BmeT110I CYCGRG 1 cut(s) 57
BmrFI CCNGG 1 cut(s) 152
BmrI ACTGGG 1 cut(s) 99
BmuI ACTGGG 1 cut(s) 99
Bpu10I CCTNAGC 1 cut(s) 260
BsaJI CCNNGG 1 cut(s) 350
BsaXI ACNNNNNCTCC 2 cut(s) 26, 56
Bsc4I CCNNNNNNNGG 2 cut(s) 26, 356
Bse1I ACTGG 1 cut(s) 94
Bse3DI GCAATG 3 cut(s) 69, 261, 436
BseBI CCWGG 1 cut(s) 152
BseDI CCNNGG 1 cut(s) 350
BseGI GGATG 2 cut(s) 135, 391
BseLI CCNNNNNNNGG 2 cut(s) 26, 356
BseMI GCAATG 3 cut(s) 69, 261, 436
BseMII CTCAG 3 cut(s) 251, 416, 570
BseNI ACTGG 1 cut(s) 94
BseXI GCAGC 2 cut(s) 238, 473
BsgI GTGCAG 1 cut(s) 480
BshFI GGCC 1 cut(s) 150
BsiHKAI GWGCWC 2 cut(s) 58, 318
BsiHKCI CYCGRG 1 cut(s) 57
BslFI GGGAC 1 cut(s) 218
BslI CCNNNNNNNGG 2 cut(s) 26, 356
BsmAI GTCTC 3 cut(s) 42, 339, 430
BsmFI GGGAC 1 cut(s) 218
BsnI GGCC 1 cut(s) 150
BsoBI CYCGRG 1 cut(s) 57
Bsp1286I GDGCHC 2 cut(s) 58, 318
Bsp1407I TGTACA 1 cut(s) 198
Bsp143I GATC 5 cut(s) 359, 375, 394, 472, 514
BspACI CCGC 1 cut(s) 227
BspANI GGCC 1 cut(s) 150
BspCNI CTCAG 3 cut(s) 252, 417, 571
BspPI GGATC 2 cut(s) 367, 402
BsrDI GCAATG 3 cut(s) 69, 261, 436
BsrGI TGTACA 1 cut(s) 198
BsrI ACTGG 1 cut(s) 94
BssECI CCNNGG 1 cut(s) 350
BssMI GATC 5 cut(s) 359, 375, 394, 472, 514
Bst2UI CCWGG 1 cut(s) 152
Bst4CI ACNGT 4 cut(s) 53, 100, 119, 512
BstAUI TGTACA 1 cut(s) 198
BstC8I GCNNGC 2 cut(s) 83, 572
BstDEI CTNAG 4 cut(s) 260, 425, 579, 586
BstDSI CCRYGG 1 cut(s) 350
BstF5I GGATG 2 cut(s) 135, 391
BstKTI GATC 5 cut(s) 362, 378, 397, 475, 517
BstMAI GTCTC 3 cut(s) 42, 339, 430
BstMBI GATC 5 cut(s) 359, 375, 394, 472, 514
BstNI CCWGG 1 cut(s) 152
BstSCI CCNGG 1 cut(s) 150
BstV1I GCAGC 2 cut(s) 238, 473
BstX2I RGATCY 1 cut(s) 359
BstYI RGATCY 1 cut(s) 359
BsuRI GGCC 1 cut(s) 150
BtgI CCRYGG 1 cut(s) 350
BtgZI GCGATG 1 cut(s) 457
BtsCI GGATG 2 cut(s) 135, 391
BtsIMutI CAGTG 3 cut(s) 58, 87, 517
Cac8I GCNNGC 2 cut(s) 83, 572
Csp6I GTAC 2 cut(s) 22, 199
CviAII CATG 1 cut(s) 139
CviJI RGCY 5 cut(s) 19, 150, 269, 412, 487
CviKI_1 RGCY 5 cut(s) 19, 150, 269, 412, 487
CviQI GTAC 2 cut(s) 22, 199
DdeI CTNAG 4 cut(s) 260, 425, 579, 586
DpnI GATC 5 cut(s) 361, 377, 396, 474, 516
DpnII GATC 5 cut(s) 359, 375, 394, 472, 514
EaeI YGGCCR 1 cut(s) 148
Eco32I GATATC 1 cut(s) 499
Eco88I CYCGRG 1 cut(s) 57
EcoRII CCWGG 1 cut(s) 150
EcoRV GATATC 1 cut(s) 499
FaeI CATG 1 cut(s) 142
FaiI YATR 7 cut(s) 26, 78, 140, 195, 466, 542, 554
FaqI GGGAC 1 cut(s) 218
FatI CATG 1 cut(s) 138
FbaI TGATCA 2 cut(s) 375, 514
Fnu4HI GCNGC 2 cut(s) 252, 462
FokI GGATG 2 cut(s) 142, 398
Fsp4HI GCNGC 2 cut(s) 252, 462
FspBI CTAG 2 cut(s) 45, 563
GluI GCNGC 2 cut(s) 252, 462
HaeIII GGCC 1 cut(s) 150
Hin1II CATG 1 cut(s) 142
HinfI GANTC 2 cut(s) 106, 584
HphI GGTGA 1 cut(s) 154
Hpy166II GTNNAC 3 cut(s) 96, 199, 449
Hpy188I TCNGA 5 cut(s) 339, 399, 526, 580, 589
Hpy188III TCNNGA 5 cut(s) 45, 59, 182, 470, 536
Hpy8I GTNNAC 3 cut(s) 96, 199, 449
Hpy99I CGWCG 1 cut(s) 123
HpyAV CCTTC 3 cut(s) 236, 304, 385
HpyCH4III ACNGT 4 cut(s) 53, 100, 119, 512
HpyCH4IV ACGT 1 cut(s) 451
HpyCH4V TGCA 2 cut(s) 254, 461
HpyF3I CTNAG 4 cut(s) 260, 425, 579, 586
HpySE526I ACGT 1 cut(s) 451
Hsp92II CATG 1 cut(s) 142
Ksp22I TGATCA 2 cut(s) 375, 514
Kzo9I GATC 5 cut(s) 359, 375, 394, 472, 514
LmnI GCTCC 2 cut(s) 313, 409
LpnPI CCDG 7 cut(s) 67, 75, 137, 164, 187, 243, 348
Lsp1109I GCAGC 2 cut(s) 238, 473
MaeI CTAG 2 cut(s) 45, 563
MaeII ACGT 1 cut(s) 451
MaeIII GTNAC 3 cut(s) 182, 232, 295
MalI GATC 5 cut(s) 361, 377, 396, 474, 516
MboI GATC 5 cut(s) 359, 375, 394, 472, 514
MboII GAAGA 2 cut(s) 209, 559
MfeI CAATTG 1 cut(s) 476
MflI RGATCY 1 cut(s) 359
MhlI GDGCHC 2 cut(s) 58, 318
MlsI TGGCCA 1 cut(s) 150
MluCI AATT 2 cut(s) 402, 476
MluNI TGGCCA 1 cut(s) 150
MlyI GAGTC 1 cut(s) 578
MnlI CCTC 7 cut(s) 120, 166, 231, 255, 350, 376, 574
Mox20I TGGCCA 1 cut(s) 150
MroXI GAANNNNTTC 1 cut(s) 531
MscI TGGCCA 1 cut(s) 150
MseI TTAA 2 cut(s) 272, 592
MslI CAYNNNNRTG 2 cut(s) 29, 329
Msp20I TGGCCA 1 cut(s) 150
MspR9I CCNGG 1 cut(s) 152
MunI CAATTG 1 cut(s) 476
MvaI CCWGG 1 cut(s) 152
NdeII GATC 5 cut(s) 359, 375, 394, 472, 514
NlaIII CATG 1 cut(s) 142
NmuCI GTSAC 2 cut(s) 182, 232
PaeR7I CTCGAG 1 cut(s) 57
PdmI GAANNNNTTC 1 cut(s) 531
PfeI GAWTC 1 cut(s) 106
PkrI GCNGC 2 cut(s) 253, 463
PleI GAGTC 1 cut(s) 578
PpsI GAGTC 1 cut(s) 578
Psp6I CCWGG 1 cut(s) 150
PspGI CCWGG 1 cut(s) 150
PsuI RGATCY 1 cut(s) 359
RsaI GTAC 2 cut(s) 23, 200
RsaNI GTAC 2 cut(s) 22, 199
RseI CAYNNNNRTG 2 cut(s) 29, 329
SaqAI TTAA 2 cut(s) 272, 592
SatI GCNGC 2 cut(s) 252, 462
Sau3AI GATC 5 cut(s) 359, 375, 394, 472, 514
SchI GAGTC 1 cut(s) 578
ScrFI CCNGG 1 cut(s) 152
SduI GDGCHC 2 cut(s) 58, 318
SetI ASST 5 cut(s) 247, 271, 374, 414, 454
Sfr274I CTCGAG 1 cut(s) 57
SlaI CTCGAG 1 cut(s) 57
SmiMI CAYNNNNRTG 2 cut(s) 29, 329
SmlI CTYRAG 1 cut(s) 57
SmoI CTYRAG 1 cut(s) 57
Sse9I AATT 2 cut(s) 402, 476
SsiI CCGC 1 cut(s) 227
SspMI CTAG 2 cut(s) 45, 563
StyD4I CCNGG 1 cut(s) 150
TaaI ACNGT 4 cut(s) 53, 100, 119, 512
TaiI ACGT 1 cut(s) 454
TaqI TCGA 3 cut(s) 58, 125, 167
TasI AATT 2 cut(s) 402, 476
TatI WGTACW 1 cut(s) 198
TfiI GAWTC 1 cut(s) 106
Tru1I TTAA 2 cut(s) 272, 592
Tru9I TTAA 2 cut(s) 272, 592
TscAI CASTG 3 cut(s) 58, 94, 517
TseFI GTSAC 2 cut(s) 182, 232
TseI GCWGC 2 cut(s) 251, 461
Tsp45I GTSAC 2 cut(s) 182, 232
TspDTI ATGAA 2 cut(s) 98, 146
TspGWI ACGGA 1 cut(s) 339
TspRI CASTG 3 cut(s) 58, 94, 517
XbaI TCTAGA 1 cut(s) 44
XhoI CTCGAG 1 cut(s) 57
XmnI GAANNNNTTC 1 cut(s) 531
XspI CTAG 2 cut(s) 45, 563
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.