Rh6CG263300

FAR1 DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0009654
Physical Location & Seq
Forward (+)
43620792 .. 43621863
1072 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG263300.1

Sequence Viewer

Length: 729 bp
ATGGAAAGCGAGAGTAACAACAACAACCCATTTGATTCAGATGAGAGCCAAAGTTGTGAGCTTCCAAATGACATTGATTTGTGCTCAGGTGAAGTAGATAAGATTATAGAACTGTCTAATGGACGCTCACATTTGATGGGTAATCCCGTTGAGCCTTACATAGGAATGGAGTTCAAGTCTAGAGACAGTGCTCGAGAGTTTTACATTGCTTATGGCAGGCACACTGGGTTTACAGTTAGGATTCATCACAACCGTCGTTCGAGGATGAATAACATGGTGATTGGCCAGGATTTCGTTTGCTCGAAAGAGGGTTTTCGTGACAAGAAGTATGTGTACAGGGACAATAGAGTTCTTCCTCCACCGCCTGTGACAAGAGAAGGTTGTGCTGCAATGCTGAGGGTGGCTTTAAGAGATGGGGAAAAGTGGGTTGTTACCAAGTTTGTGAAGGAGCACAATCACACATTGATGTCTCCGAGTAAAGTTCCGTGGCGAGGATCTGGGAAAACCTTGATCAATGAGGATGAGAAGGATCGGAAAATTAGGGAGCTGACCACTGAACTGAGCAATGAGAGACAGCGATGTAAACGTAAGTGTGCAGCATATCAAGATCAATTGAATAGGCTTTTGAAAGATATCCAAGACCACAGTGATCACTTGTCAGAAAGAGTTCAAGACATAGTGAAGAACATAAGAGAACTAGAGAGCGAGCAATCTGAGGACTCAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1

Protein Analysis

242

Amino Acids

28.13

Weight (kDa)

6.27

Isoelectric Point (pI)

52.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 66 - 156 2.6e-25 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 362
AclWI GGATC 2 cut(s) 502, 537
AcoI YGGCCR 1 cut(s) 283
AfaI GTAC 1 cut(s) 335
AfiI CCNNNNNNNGG 2 cut(s) 161, 491
AgsI TTSAA 4 cut(s) 175, 616, 628, 671
AjnI CCWGG 1 cut(s) 285
AluBI AGCT 2 cut(s) 61, 547
AluI AGCT 2 cut(s) 61, 547
Alw21I GWGCWC 3 cut(s) 86, 193, 453
Alw26I GTCTC 3 cut(s) 177, 474, 565
AlwI GGATC 2 cut(s) 502, 537
Ama87I CYCGRG 1 cut(s) 192
AoxI GGCC 1 cut(s) 283
ApeKI GCWGC 2 cut(s) 386, 596
Asp700I GAANNNNTTC 1 cut(s) 666
AsuHPI GGTGA 2 cut(s) 101, 289
AvaI CYCGRG 1 cut(s) 192
BalI TGGCCA 1 cut(s) 285
BarI GAAGNNNNNNTAC 2 cut(s) 317, 349
Bbv12I GWGCWC 3 cut(s) 86, 193, 453
BbvCI CCTCAGC 1 cut(s) 395
BbvI GCAGC 2 cut(s) 373, 608
BccI CCATC 2 cut(s) 130, 407
BciT130I CCWGG 1 cut(s) 287
BclI TGATCA 2 cut(s) 510, 649
BcoDI GTCTC 3 cut(s) 177, 474, 565
BfaI CTAG 2 cut(s) 180, 698
BisI GCNGC 2 cut(s) 387, 597
BlsI GCNGC 2 cut(s) 388, 598
Bme1390I CCNGG 1 cut(s) 287
BmeT110I CYCGRG 1 cut(s) 192
BmrFI CCNGG 1 cut(s) 287
BmrI ACTGGG 1 cut(s) 234
BmuI ACTGGG 1 cut(s) 234
Bpu10I CCTNAGC 2 cut(s) 85, 395
BsaJI CCNNGG 1 cut(s) 485
BsaXI ACNNNNNCTCC 2 cut(s) 161, 191
Bsc4I CCNNNNNNNGG 2 cut(s) 161, 491
Bse1I ACTGG 1 cut(s) 229
Bse3DI GCAATG 3 cut(s) 204, 396, 571
BseBI CCWGG 1 cut(s) 287
BseDI CCNNGG 1 cut(s) 485
BseGI GGATG 2 cut(s) 270, 526
BseLI CCNNNNNNNGG 2 cut(s) 161, 491
BseMI GCAATG 3 cut(s) 204, 396, 571
BseMII CTCAG 4 cut(s) 99, 386, 551, 705
BseNI ACTGG 1 cut(s) 229
BseXI GCAGC 2 cut(s) 373, 608
BsgI GTGCAG 1 cut(s) 615
BshFI GGCC 1 cut(s) 285
BsiHKAI GWGCWC 3 cut(s) 86, 193, 453
BsiHKCI CYCGRG 1 cut(s) 192
BslFI GGGAC 1 cut(s) 353
BslI CCNNNNNNNGG 2 cut(s) 161, 491
BsmAI GTCTC 3 cut(s) 177, 474, 565
BsmFI GGGAC 1 cut(s) 353
BsnI GGCC 1 cut(s) 285
BsoBI CYCGRG 1 cut(s) 192
Bsp1286I GDGCHC 3 cut(s) 86, 193, 453
Bsp1407I TGTACA 1 cut(s) 333
Bsp143I GATC 5 cut(s) 494, 510, 529, 607, 649
BspACI CCGC 1 cut(s) 362
BspANI GGCC 1 cut(s) 285
BspCNI CTCAG 4 cut(s) 98, 387, 552, 706
BspPI GGATC 2 cut(s) 502, 537
BsrDI GCAATG 3 cut(s) 204, 396, 571
BsrGI TGTACA 1 cut(s) 333
BsrI ACTGG 1 cut(s) 229
BssECI CCNNGG 1 cut(s) 485
BssMI GATC 5 cut(s) 494, 510, 529, 607, 649
Bst2UI CCWGG 1 cut(s) 287
Bst4CI ACNGT 5 cut(s) 114, 188, 235, 254, 647
BstAUI TGTACA 1 cut(s) 333
BstC8I GCNNGC 2 cut(s) 218, 707
BstDEI CTNAG 5 cut(s) 85, 395, 560, 714, 721
BstDSI CCRYGG 1 cut(s) 485
BstENI CCTNNNNNAGG 1 cut(s) 159
BstF5I GGATG 2 cut(s) 270, 526
BstKTI GATC 5 cut(s) 497, 513, 532, 610, 652
BstMAI GTCTC 3 cut(s) 177, 474, 565
BstMBI GATC 5 cut(s) 494, 510, 529, 607, 649
BstNI CCWGG 1 cut(s) 287
BstSCI CCNGG 1 cut(s) 285
BstV1I GCAGC 2 cut(s) 373, 608
BstX2I RGATCY 1 cut(s) 494
BstYI RGATCY 1 cut(s) 494
BsuRI GGCC 1 cut(s) 285
BtgI CCRYGG 1 cut(s) 485
BtgZI GCGATG 1 cut(s) 592
BtsCI GGATG 2 cut(s) 270, 526
BtsIMutI CAGTG 4 cut(s) 193, 222, 552, 652
Cac8I GCNNGC 2 cut(s) 218, 707
CseI GACGC 1 cut(s) 132
Csp6I GTAC 1 cut(s) 334
CviAII CATG 1 cut(s) 274
CviJI RGCY 7 cut(s) 48, 61, 154, 285, 404, 547, 622
CviKI_1 RGCY 7 cut(s) 48, 61, 154, 285, 404, 547, 622
CviQI GTAC 1 cut(s) 334
DdeI CTNAG 5 cut(s) 85, 395, 560, 714, 721
DpnI GATC 5 cut(s) 496, 512, 531, 609, 651
DpnII GATC 5 cut(s) 494, 510, 529, 607, 649
EaeI YGGCCR 1 cut(s) 283
Eco32I GATATC 1 cut(s) 634
Eco88I CYCGRG 1 cut(s) 192
EcoNI CCTNNNNNAGG 1 cut(s) 159
EcoRII CCWGG 1 cut(s) 285
EcoRV GATATC 1 cut(s) 634
FaeI CATG 1 cut(s) 277
FaiI YATR 8 cut(s) 107, 161, 213, 275, 330, 601, 677, 689
FaqI GGGAC 1 cut(s) 353
FatI CATG 1 cut(s) 273
FbaI TGATCA 2 cut(s) 510, 649
Fnu4HI GCNGC 2 cut(s) 387, 597
FokI GGATG 2 cut(s) 277, 533
Fsp4HI GCNGC 2 cut(s) 387, 597
FspBI CTAG 2 cut(s) 180, 698
GluI GCNGC 2 cut(s) 387, 597
HaeIII GGCC 1 cut(s) 285
HgaI GACGC 1 cut(s) 132
Hin1II CATG 1 cut(s) 277
HinfI GANTC 3 cut(s) 35, 241, 719
HphI GGTGA 2 cut(s) 101, 289
Hpy166II GTNNAC 3 cut(s) 231, 334, 584
Hpy188I TCNGA 6 cut(s) 40, 474, 534, 661, 715, 724
Hpy188III TCNNGA 5 cut(s) 180, 194, 317, 605, 671
Hpy8I GTNNAC 3 cut(s) 231, 334, 584
Hpy99I CGWCG 1 cut(s) 258
HpyAV CCTTC 3 cut(s) 371, 439, 520
HpyCH4III ACNGT 5 cut(s) 114, 188, 235, 254, 647
HpyCH4IV ACGT 1 cut(s) 586
HpyCH4V TGCA 2 cut(s) 389, 596
HpyF3I CTNAG 5 cut(s) 85, 395, 560, 714, 721
HpySE526I ACGT 1 cut(s) 586
Hsp92II CATG 1 cut(s) 277
Ksp22I TGATCA 2 cut(s) 510, 649
Kzo9I GATC 5 cut(s) 494, 510, 529, 607, 649
LmnI GCTCC 2 cut(s) 448, 544
LpnPI CCDG 8 cut(s) 72, 202, 210, 272, 299, 322, 378, 483
Lsp1109I GCAGC 2 cut(s) 373, 608
MaeI CTAG 2 cut(s) 180, 698
MaeII ACGT 1 cut(s) 586
MaeIII GTNAC 4 cut(s) 14, 317, 367, 430
MalI GATC 5 cut(s) 496, 512, 531, 609, 651
MboI GATC 5 cut(s) 494, 510, 529, 607, 649
MboII GAAGA 2 cut(s) 344, 694
MfeI CAATTG 1 cut(s) 611
MflI RGATCY 1 cut(s) 494
MhlI GDGCHC 3 cut(s) 86, 193, 453
MlsI TGGCCA 1 cut(s) 285
MluCI AATT 2 cut(s) 537, 611
MluNI TGGCCA 1 cut(s) 285
MlyI GAGTC 1 cut(s) 713
MnlI CCTC 7 cut(s) 255, 301, 366, 390, 485, 511, 709
Mox20I TGGCCA 1 cut(s) 285
MroXI GAANNNNTTC 1 cut(s) 666
MscI TGGCCA 1 cut(s) 285
MseI TTAA 2 cut(s) 407, 727
MslI CAYNNNNRTG 2 cut(s) 164, 464
Msp20I TGGCCA 1 cut(s) 285
MspR9I CCNGG 1 cut(s) 287
MunI CAATTG 1 cut(s) 611
MvaI CCWGG 1 cut(s) 287
NdeII GATC 5 cut(s) 494, 510, 529, 607, 649
NlaIII CATG 1 cut(s) 277
NmuCI GTSAC 2 cut(s) 317, 367
PaeR7I CTCGAG 1 cut(s) 192
PdmI GAANNNNTTC 1 cut(s) 666
PfeI GAWTC 2 cut(s) 35, 241
PkrI GCNGC 2 cut(s) 388, 598
PleI GAGTC 1 cut(s) 713
PpsI GAGTC 1 cut(s) 713
Psp6I CCWGG 1 cut(s) 285
PspGI CCWGG 1 cut(s) 285
PsuI RGATCY 1 cut(s) 494
RsaI GTAC 1 cut(s) 335
RsaNI GTAC 1 cut(s) 334
RseI CAYNNNNRTG 2 cut(s) 164, 464
SaqAI TTAA 2 cut(s) 407, 727
SatI GCNGC 2 cut(s) 387, 597
Sau3AI GATC 5 cut(s) 494, 510, 529, 607, 649
SchI GAGTC 1 cut(s) 713
ScrFI CCNGG 1 cut(s) 287
SduI GDGCHC 3 cut(s) 86, 193, 453
SetI ASST 6 cut(s) 63, 91, 382, 509, 549, 589
Sfr274I CTCGAG 1 cut(s) 192
SlaI CTCGAG 1 cut(s) 192
SmiMI CAYNNNNRTG 2 cut(s) 164, 464
SmlI CTYRAG 1 cut(s) 192
SmoI CTYRAG 1 cut(s) 192
Sse9I AATT 2 cut(s) 537, 611
SsiI CCGC 1 cut(s) 362
SspMI CTAG 2 cut(s) 180, 698
StyD4I CCNGG 1 cut(s) 285
TaaI ACNGT 5 cut(s) 114, 188, 235, 254, 647
TaiI ACGT 1 cut(s) 589
TaqI TCGA 3 cut(s) 193, 260, 302
TasI AATT 2 cut(s) 537, 611
TatI WGTACW 1 cut(s) 333
TfiI GAWTC 2 cut(s) 35, 241
Tru1I TTAA 2 cut(s) 407, 727
Tru9I TTAA 2 cut(s) 407, 727
TscAI CASTG 4 cut(s) 193, 229, 559, 652
TseFI GTSAC 2 cut(s) 317, 367
TseI GCWGC 2 cut(s) 386, 596
Tsp45I GTSAC 2 cut(s) 317, 367
TspDTI ATGAA 2 cut(s) 233, 281
TspGWI ACGGA 1 cut(s) 474
TspRI CASTG 4 cut(s) 193, 229, 559, 652
XagI CCTNNNNNAGG 1 cut(s) 159
XbaI TCTAGA 1 cut(s) 179
XhoI CTCGAG 1 cut(s) 192
XmnI GAANNNNTTC 1 cut(s) 666
XspI CTAG 2 cut(s) 180, 698
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.