Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005697.1

Orthogroup ID

OG0009654

Physical Location & Seq

Genomic Coordinates Reverse (-)

14468 .. 15548

Gene Structure 1081 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005697.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

atggaaagcgagagtaacaacaacaacaacaacaacccatttgattcagatgagagccaaagttgtgagcttccaaatgacattgatttgtgctcaggtgaagtagataagattatagaactgtctaatggacgctcacatttgatgggtaatcccattgagccttacataggaatggagttcaagtctagagacactgctcgagagttttacattgcttatggcaggcacactgggtttacagttaggattcatcacaaccgtcgttcgaggatgaataacatggtgattggccaggatttcgtttgctcgaaagagggttttcgtgacaagaagtatgtgtacagggacaatagagttcttcctccaccgcctgtgacaagagaaggttgtgctgcaatgctgagggtggctttaagagatggggaaaagtgggttgttaccaagtttgtgaaggagcacaatcacacattgatgtctccgagtaaagttccgtggcgaggatctgggaaaaccttgatcaatgaggatgagaaggatcggaaaattagggagctgaccattgaactgagcaatgagagacagcgatgtaaacgtaagtgtgcagcatatcaagatcaattgaataggcttttgaaagatgtccaagaccacagtgatcacttgtcagaaagagttcaagacatagtgaagaacataagagaactagagagcgagcaatctgaggactcagattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1

Protein Analysis

245

Amino Acids

28.5

Weight (kDa)

6.27

Isoelectric Point (pI)

52.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009654)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g17603 FvH4_2g17603 FvH4_2g17603
malus_domestica	MD04G1041900.v1.1
prunus_persica	Prupe.1G195700_v2.0.a1 Prupe.1G195700_v2.0.a1 Prupe.8G188600_v2.0.a1
pyrus_communis	pycom04g03690 pycom13g28370 pycom275g00050
rosa_chinensis	RchiOBHm_Chr6g0282581
rosa_laevigata	RLG00000012884
rosa_multiflora	Rmu_co8454661.1_g000001 Rmu_sc0000283.1_g000004 Rmu_sc0005697.1_g000005
rosa_roxburghii	Rroxscaffold_7G00186250
rosa_rugosa	Rorug06G0147800
rosa_samantha	Rh6AG261000 Rh6BG264100 Rh6CG263300 Rh6DG255200
rosa_wichuraiana	Rw6G022570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	371
AclWI	GGATC	2 cut(s)	511, 546
AcoI	YGGCCR	1 cut(s)	292
AfaI	GTAC	1 cut(s)	344
AfiI	CCNNNNNNNGG	2 cut(s)	170, 500
AgsI	TTSAA	5 cut(s)	184, 566, 625, 637, 680
AjnI	CCWGG	1 cut(s)	294
AluBI	AGCT	2 cut(s)	70, 556
AluI	AGCT	2 cut(s)	70, 556
Alw21I	GWGCWC	2 cut(s)	95, 462
Alw26I	GTCTC	3 cut(s)	186, 483, 574
AlwI	GGATC	2 cut(s)	511, 546
Ama87I	CYCGRG	1 cut(s)	201
AoxI	GGCC	1 cut(s)	292
ApeKI	GCWGC	2 cut(s)	395, 605
Asp700I	GAANNNNTTC	1 cut(s)	675
AsuHPI	GGTGA	2 cut(s)	110, 298
AvaI	CYCGRG	1 cut(s)	201
BalI	TGGCCA	1 cut(s)	294
BarI	GAAGNNNNNNTAC	2 cut(s)	326, 358
Bbv12I	GWGCWC	2 cut(s)	95, 462
BbvCI	CCTCAGC	1 cut(s)	404
BbvI	GCAGC	2 cut(s)	382, 617
BccI	CCATC	2 cut(s)	139, 416
BciT130I	CCWGG	1 cut(s)	296
BclI	TGATCA	2 cut(s)	519, 658
BcoDI	GTCTC	3 cut(s)	186, 483, 574
BfaI	CTAG	2 cut(s)	189, 707
BisI	GCNGC	2 cut(s)	396, 606
BlsI	GCNGC	2 cut(s)	397, 607
Bme1390I	CCNGG	1 cut(s)	296
BmeT110I	CYCGRG	1 cut(s)	201
BmrFI	CCNGG	1 cut(s)	296
BmrI	ACTGGG	1 cut(s)	243
BmuI	ACTGGG	1 cut(s)	243
Bpu10I	CCTNAGC	2 cut(s)	94, 404
BsaJI	CCNNGG	1 cut(s)	494
BsaXI	ACNNNNNCTCC	2 cut(s)	170, 200
Bsc4I	CCNNNNNNNGG	2 cut(s)	170, 500
Bse1I	ACTGG	1 cut(s)	238
Bse3DI	GCAATG	3 cut(s)	213, 405, 580
BseBI	CCWGG	1 cut(s)	296
BseDI	CCNNGG	1 cut(s)	494
BseGI	GGATG	2 cut(s)	279, 535
BseLI	CCNNNNNNNGG	2 cut(s)	170, 500
BseMI	GCAATG	3 cut(s)	213, 405, 580
BseMII	CTCAG	4 cut(s)	108, 395, 560, 714
BseNI	ACTGG	1 cut(s)	238
BseXI	GCAGC	2 cut(s)	382, 617
BsgI	GTGCAG	1 cut(s)	624
BshFI	GGCC	1 cut(s)	294
BsiHKAI	GWGCWC	2 cut(s)	95, 462
BsiHKCI	CYCGRG	1 cut(s)	201
BslFI	GGGAC	1 cut(s)	362
BslI	CCNNNNNNNGG	2 cut(s)	170, 500
BsmAI	GTCTC	3 cut(s)	186, 483, 574
BsmFI	GGGAC	1 cut(s)	362
BsnI	GGCC	1 cut(s)	294
BsoBI	CYCGRG	1 cut(s)	201
Bsp1286I	GDGCHC	2 cut(s)	95, 462
Bsp1407I	TGTACA	1 cut(s)	342
Bsp143I	GATC	5 cut(s)	503, 519, 538, 616, 658
BspACI	CCGC	1 cut(s)	371
BspANI	GGCC	1 cut(s)	294
BspCNI	CTCAG	4 cut(s)	107, 396, 561, 715
BspPI	GGATC	2 cut(s)	511, 546
BsrDI	GCAATG	3 cut(s)	213, 405, 580
BsrGI	TGTACA	1 cut(s)	342
BsrI	ACTGG	1 cut(s)	238
BssECI	CCNNGG	1 cut(s)	494
BssMI	GATC	5 cut(s)	503, 519, 538, 616, 658
Bst2UI	CCWGG	1 cut(s)	296
Bst4CI	ACNGT	4 cut(s)	123, 244, 263, 656
BstAUI	TGTACA	1 cut(s)	342
BstC8I	GCNNGC	2 cut(s)	227, 716
BstDEI	CTNAG	5 cut(s)	94, 404, 569, 723, 730
BstDSI	CCRYGG	1 cut(s)	494
BstENI	CCTNNNNNAGG	1 cut(s)	168
BstF5I	GGATG	2 cut(s)	279, 535
BstKTI	GATC	5 cut(s)	506, 522, 541, 619, 661
BstMAI	GTCTC	3 cut(s)	186, 483, 574
BstMBI	GATC	5 cut(s)	503, 519, 538, 616, 658
BstNI	CCWGG	1 cut(s)	296
BstSCI	CCNGG	1 cut(s)	294
BstV1I	GCAGC	2 cut(s)	382, 617
BstX2I	RGATCY	1 cut(s)	503
BstYI	RGATCY	1 cut(s)	503
BsuRI	GGCC	1 cut(s)	294
BtgI	CCRYGG	1 cut(s)	494
BtgZI	GCGATG	1 cut(s)	601
BtsCI	GGATG	2 cut(s)	279, 535
BtsI	GCAGTG	1 cut(s)	195
BtsIMutI	CAGTG	3 cut(s)	195, 231, 661
Cac8I	GCNNGC	2 cut(s)	227, 716
CseI	GACGC	1 cut(s)	141
Csp6I	GTAC	1 cut(s)	343
CviAII	CATG	1 cut(s)	283
CviJI	RGCY	7 cut(s)	57, 70, 163, 294, 413, 556, 631
CviKI_1	RGCY	7 cut(s)	57, 70, 163, 294, 413, 556, 631
CviQI	GTAC	1 cut(s)	343
DdeI	CTNAG	5 cut(s)	94, 404, 569, 723, 730
DpnI	GATC	5 cut(s)	505, 521, 540, 618, 660
DpnII	GATC	5 cut(s)	503, 519, 538, 616, 658
EaeI	YGGCCR	1 cut(s)	292
Eco88I	CYCGRG	1 cut(s)	201
EcoNI	CCTNNNNNAGG	1 cut(s)	168
EcoRII	CCWGG	1 cut(s)	294
FaeI	CATG	1 cut(s)	286
FaiI	YATR	8 cut(s)	116, 170, 222, 284, 339, 610, 686, 698
FaqI	GGGAC	1 cut(s)	362
FatI	CATG	1 cut(s)	282
FbaI	TGATCA	2 cut(s)	519, 658
Fnu4HI	GCNGC	2 cut(s)	396, 606
FokI	GGATG	2 cut(s)	286, 542
Fsp4HI	GCNGC	2 cut(s)	396, 606
FspBI	CTAG	2 cut(s)	189, 707
GluI	GCNGC	2 cut(s)	396, 606
HaeIII	GGCC	1 cut(s)	294
HgaI	GACGC	1 cut(s)	141
Hin1II	CATG	1 cut(s)	286
HinfI	GANTC	3 cut(s)	44, 250, 728
HphI	GGTGA	2 cut(s)	110, 298
Hpy166II	GTNNAC	3 cut(s)	240, 343, 593
Hpy188I	TCNGA	6 cut(s)	49, 483, 543, 670, 724, 733
Hpy188III	TCNNGA	5 cut(s)	189, 203, 326, 614, 680
Hpy8I	GTNNAC	3 cut(s)	240, 343, 593
Hpy99I	CGWCG	1 cut(s)	267
HpyAV	CCTTC	3 cut(s)	380, 448, 529
HpyCH4III	ACNGT	4 cut(s)	123, 244, 263, 656
HpyCH4IV	ACGT	1 cut(s)	595
HpyCH4V	TGCA	2 cut(s)	398, 605
HpyF3I	CTNAG	5 cut(s)	94, 404, 569, 723, 730
HpySE526I	ACGT	1 cut(s)	595
Hsp92II	CATG	1 cut(s)	286
Ksp22I	TGATCA	2 cut(s)	519, 658
Kzo9I	GATC	5 cut(s)	503, 519, 538, 616, 658
LmnI	GCTCC	2 cut(s)	457, 553
LpnPI	CCDG	8 cut(s)	81, 211, 219, 281, 308, 331, 387, 492
Lsp1109I	GCAGC	2 cut(s)	382, 617
MaeI	CTAG	2 cut(s)	189, 707
MaeII	ACGT	1 cut(s)	595
MaeIII	GTNAC	4 cut(s)	14, 326, 376, 439
MalI	GATC	5 cut(s)	505, 521, 540, 618, 660
MboI	GATC	5 cut(s)	503, 519, 538, 616, 658
MboII	GAAGA	2 cut(s)	353, 703
MfeI	CAATTG	1 cut(s)	620
MflI	RGATCY	1 cut(s)	503
MhlI	GDGCHC	2 cut(s)	95, 462
MlsI	TGGCCA	1 cut(s)	294
MluCI	AATT	2 cut(s)	546, 620
MluNI	TGGCCA	1 cut(s)	294
MlyI	GAGTC	1 cut(s)	722
MnlI	CCTC	7 cut(s)	264, 310, 375, 399, 494, 520, 718
Mox20I	TGGCCA	1 cut(s)	294
MroXI	GAANNNNTTC	1 cut(s)	675
MscI	TGGCCA	1 cut(s)	294
MseI	TTAA	2 cut(s)	416, 736
MslI	CAYNNNNRTG	2 cut(s)	173, 473
Msp20I	TGGCCA	1 cut(s)	294
MspR9I	CCNGG	1 cut(s)	296
MunI	CAATTG	1 cut(s)	620
MvaI	CCWGG	1 cut(s)	296
NdeII	GATC	5 cut(s)	503, 519, 538, 616, 658
NlaIII	CATG	1 cut(s)	286
NmuCI	GTSAC	2 cut(s)	326, 376
PaeR7I	CTCGAG	1 cut(s)	201
PdmI	GAANNNNTTC	1 cut(s)	675
PfeI	GAWTC	2 cut(s)	44, 250
PkrI	GCNGC	2 cut(s)	397, 607
PleI	GAGTC	1 cut(s)	722
PpsI	GAGTC	1 cut(s)	722
Psp6I	CCWGG	1 cut(s)	294
PspGI	CCWGG	1 cut(s)	294
PsuI	RGATCY	1 cut(s)	503
RsaI	GTAC	1 cut(s)	344
RsaNI	GTAC	1 cut(s)	343
RseI	CAYNNNNRTG	2 cut(s)	173, 473
SaqAI	TTAA	2 cut(s)	416, 736
SatI	GCNGC	2 cut(s)	396, 606
Sau3AI	GATC	5 cut(s)	503, 519, 538, 616, 658
SchI	GAGTC	1 cut(s)	722
ScrFI	CCNGG	1 cut(s)	296
SduI	GDGCHC	2 cut(s)	95, 462
SetI	ASST	6 cut(s)	72, 100, 391, 518, 558, 598
Sfr274I	CTCGAG	1 cut(s)	201
SlaI	CTCGAG	1 cut(s)	201
SmiMI	CAYNNNNRTG	2 cut(s)	173, 473
SmlI	CTYRAG	1 cut(s)	201
SmoI	CTYRAG	1 cut(s)	201
Sse9I	AATT	2 cut(s)	546, 620
SsiI	CCGC	1 cut(s)	371
SspMI	CTAG	2 cut(s)	189, 707
StyD4I	CCNGG	1 cut(s)	294
TaaI	ACNGT	4 cut(s)	123, 244, 263, 656
TaiI	ACGT	1 cut(s)	598
TaqI	TCGA	3 cut(s)	202, 269, 311
TasI	AATT	2 cut(s)	546, 620
TatI	WGTACW	1 cut(s)	342
TfiI	GAWTC	2 cut(s)	44, 250
Tru1I	TTAA	2 cut(s)	416, 736
Tru9I	TTAA	2 cut(s)	416, 736
TscAI	CASTG	3 cut(s)	202, 238, 661
TseFI	GTSAC	2 cut(s)	326, 376
TseI	GCWGC	2 cut(s)	395, 605
Tsp45I	GTSAC	2 cut(s)	326, 376
TspDTI	ATGAA	2 cut(s)	242, 290
TspGWI	ACGGA	1 cut(s)	483
TspRI	CASTG	3 cut(s)	202, 238, 661
XagI	CCTNNNNNAGG	1 cut(s)	168
XbaI	TCTAGA	1 cut(s)	188
XhoI	CTCGAG	1 cut(s)	201
XmnI	GAANNNNTTC	1 cut(s)	675
XspI	CTAG	2 cut(s)	189, 707

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.