Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0009654

Physical Location & Seq

Genomic Coordinates Reverse (-)

25607514 .. 25609349

Gene Structure 1836 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00186250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGAAAGCGAGAGCAACAACAACAACAACCCATTTGATTCAGATGAGAGCCAAAGTTGTGAGCTTCCAAATGACATTGATTTGTGCTCAGGTGAAGTAGATAAGATTATGGAACTGTCGGGTAATCCCATTGAGCCTTACATAGGAATGGAGTTCAAGTCTAGAGACAGTGCTCGAGAGTTTTACATTGCTTATGGCAGGCACACTGGGTTTACAGTTAGGATTCATCACAACCGTCGTTCGAGGATGAATAACATGGTGATTGGCCAGGATTTCGTTTGCTCGAAAGAGGGTTTTCGTGACAAGAAGTATGTGTACAGGGACAATAGAGTTCTTCCTCCACCGCCTGTGACAAGAGAAGGTTGTGCTGCAATGCTGAGGGTAGCTTTAAGAGATGGGGAAAAGTGGGTTGTTACCAAGTTTGTGAAGGAGCACAATCACACATTAATGTCTCCGAGTAAAGTTCCGTGGCGAGGATCTGGGAAAACCTTGATCAATGAGGACGAGAAGGATCGGAAAATTAGGGAGCTGACGATCGAACTGAGCAATGAGAGACAGCGATGTAAACGTAAGTGTGCAGCATATCAAGATCAATTGAATAGGCTTTTGAAAGATGTCCAAGACCACAGTGATCACTTGTCAGAAAGAGTTCAAGACATAGTGAAGAACATAAGAGAACTAGAGAGTGAGCAATCTGAGGACTCAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1

Protein Analysis

236

Amino Acids

27.49

Weight (kDa)

6.04

Isoelectric Point (pI)

53.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAR1	PF03101	60 - 150	2.5e-25	FAR1 DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009654)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g17603 FvH4_2g17603 FvH4_2g17603
malus_domestica	MD04G1041900.v1.1
prunus_persica	Prupe.1G195700_v2.0.a1 Prupe.1G195700_v2.0.a1 Prupe.8G188600_v2.0.a1
pyrus_communis	pycom04g03690 pycom13g28370 pycom275g00050
rosa_chinensis	RchiOBHm_Chr6g0282581
rosa_laevigata	RLG00000012884
rosa_multiflora	Rmu_co8454661.1_g000001 Rmu_sc0000283.1_g000004 Rmu_sc0005697.1_g000005
rosa_roxburghii	Rroxscaffold_7G00186250
rosa_rugosa	Rorug06G0147800
rosa_samantha	Rh6AG261000 Rh6BG264100 Rh6CG263300 Rh6DG255200
rosa_wichuraiana	Rw6G022570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	344
AclWI	GGATC	2 cut(s)	484, 519
AcoI	YGGCCR	1 cut(s)	265
AfaI	GTAC	1 cut(s)	317
AfiI	CCNNNNNNNGG	2 cut(s)	143, 473
AgsI	TTSAA	4 cut(s)	157, 598, 610, 653
AjnI	CCWGG	1 cut(s)	267
AluBI	AGCT	3 cut(s)	64, 386, 529
AluI	AGCT	3 cut(s)	64, 386, 529
Alw21I	GWGCWC	3 cut(s)	89, 175, 435
Alw26I	GTCTC	3 cut(s)	159, 456, 547
AlwI	GGATC	2 cut(s)	484, 519
Ama87I	CYCGRG	1 cut(s)	174
AoxI	GGCC	1 cut(s)	265
ApeKI	GCWGC	2 cut(s)	368, 578
AseI	ATTAAT	1 cut(s)	446
Asp700I	GAANNNNTTC	1 cut(s)	648
AsuHPI	GGTGA	2 cut(s)	104, 271
AvaI	CYCGRG	1 cut(s)	174
BalI	TGGCCA	1 cut(s)	267
BarI	GAAGNNNNNNTAC	2 cut(s)	299, 331
Bbv12I	GWGCWC	3 cut(s)	89, 175, 435
BbvCI	CCTCAGC	1 cut(s)	377
BbvI	GCAGC	2 cut(s)	355, 590
BccI	CCATC	1 cut(s)	389
BciT130I	CCWGG	1 cut(s)	269
BclI	TGATCA	2 cut(s)	492, 631
BcoDI	GTCTC	3 cut(s)	159, 456, 547
BfaI	CTAG	2 cut(s)	162, 680
BisI	GCNGC	2 cut(s)	369, 579
BlsI	GCNGC	2 cut(s)	370, 580
Bme1390I	CCNGG	1 cut(s)	269
BmeT110I	CYCGRG	1 cut(s)	174
BmrFI	CCNGG	1 cut(s)	269
BmrI	ACTGGG	1 cut(s)	216
BmuI	ACTGGG	1 cut(s)	216
Bpu10I	CCTNAGC	2 cut(s)	88, 377
BsaJI	CCNNGG	1 cut(s)	467
BsaXI	ACNNNNNCTCC	2 cut(s)	143, 173
Bsc4I	CCNNNNNNNGG	2 cut(s)	143, 473
Bse1I	ACTGG	1 cut(s)	211
Bse3DI	GCAATG	3 cut(s)	186, 378, 553
BseBI	CCWGG	1 cut(s)	269
BseDI	CCNNGG	1 cut(s)	467
BseGI	GGATG	1 cut(s)	252
BseLI	CCNNNNNNNGG	2 cut(s)	143, 473
BseMI	GCAATG	3 cut(s)	186, 378, 553
BseMII	CTCAG	4 cut(s)	102, 368, 533, 687
BseNI	ACTGG	1 cut(s)	211
BseXI	GCAGC	2 cut(s)	355, 590
BsgI	GTGCAG	1 cut(s)	597
Bsh1285I	CGRYCG	1 cut(s)	537
BshFI	GGCC	1 cut(s)	267
BsiEI	CGRYCG	1 cut(s)	537
BsiHKAI	GWGCWC	3 cut(s)	89, 175, 435
BsiHKCI	CYCGRG	1 cut(s)	174
BslFI	GGGAC	1 cut(s)	335
BslI	CCNNNNNNNGG	2 cut(s)	143, 473
BsmAI	GTCTC	3 cut(s)	159, 456, 547
BsmFI	GGGAC	1 cut(s)	335
BsnI	GGCC	1 cut(s)	267
BsoBI	CYCGRG	1 cut(s)	174
Bsp1286I	GDGCHC	3 cut(s)	89, 175, 435
Bsp1407I	TGTACA	1 cut(s)	315
Bsp143I	GATC	6 cut(s)	476, 492, 511, 534, 589, 631
BspACI	CCGC	1 cut(s)	344
BspANI	GGCC	1 cut(s)	267
BspCNI	CTCAG	4 cut(s)	101, 369, 534, 688
BspPI	GGATC	2 cut(s)	484, 519
BsrDI	GCAATG	3 cut(s)	186, 378, 553
BsrGI	TGTACA	1 cut(s)	315
BsrI	ACTGG	1 cut(s)	211
BssECI	CCNNGG	1 cut(s)	467
BssMI	GATC	6 cut(s)	476, 492, 511, 534, 589, 631
Bst2UI	CCWGG	1 cut(s)	269
Bst4CI	ACNGT	5 cut(s)	117, 170, 217, 236, 629
BstAUI	TGTACA	1 cut(s)	315
BstC8I	GCNNGC	1 cut(s)	200
BstDEI	CTNAG	5 cut(s)	88, 377, 542, 696, 703
BstDSI	CCRYGG	1 cut(s)	467
BstENI	CCTNNNNNAGG	1 cut(s)	141
BstF5I	GGATG	1 cut(s)	252
BstKTI	GATC	6 cut(s)	479, 495, 514, 537, 592, 634
BstMAI	GTCTC	3 cut(s)	159, 456, 547
BstMBI	GATC	6 cut(s)	476, 492, 511, 534, 589, 631
BstMCI	CGRYCG	1 cut(s)	537
BstNI	CCWGG	1 cut(s)	269
BstSCI	CCNGG	1 cut(s)	267
BstV1I	GCAGC	2 cut(s)	355, 590
BstX2I	RGATCY	1 cut(s)	476
BstYI	RGATCY	1 cut(s)	476
BsuRI	GGCC	1 cut(s)	267
BtgI	CCRYGG	1 cut(s)	467
BtgZI	GCGATG	1 cut(s)	574
BtsCI	GGATG	1 cut(s)	252
BtsIMutI	CAGTG	3 cut(s)	175, 204, 634
Cac8I	GCNNGC	1 cut(s)	200
Csp6I	GTAC	1 cut(s)	316
CviAII	CATG	1 cut(s)	256
CviJI	RGCY	7 cut(s)	51, 64, 136, 267, 386, 529, 604
CviKI_1	RGCY	7 cut(s)	51, 64, 136, 267, 386, 529, 604
CviQI	GTAC	1 cut(s)	316
DdeI	CTNAG	5 cut(s)	88, 377, 542, 696, 703
DpnI	GATC	6 cut(s)	478, 494, 513, 536, 591, 633
DpnII	GATC	6 cut(s)	476, 492, 511, 534, 589, 631
EaeI	YGGCCR	1 cut(s)	265
Eco88I	CYCGRG	1 cut(s)	174
EcoNI	CCTNNNNNAGG	1 cut(s)	141
EcoRII	CCWGG	1 cut(s)	267
FaeI	CATG	1 cut(s)	259
FaiI	YATR	8 cut(s)	110, 143, 195, 257, 312, 583, 659, 671
FaqI	GGGAC	1 cut(s)	335
FatI	CATG	1 cut(s)	255
FbaI	TGATCA	2 cut(s)	492, 631
Fnu4HI	GCNGC	2 cut(s)	369, 579
FokI	GGATG	1 cut(s)	259
Fsp4HI	GCNGC	2 cut(s)	369, 579
FspBI	CTAG	2 cut(s)	162, 680
GluI	GCNGC	2 cut(s)	369, 579
HaeIII	GGCC	1 cut(s)	267
Hin1II	CATG	1 cut(s)	259
HinfI	GANTC	3 cut(s)	38, 223, 701
HphI	GGTGA	2 cut(s)	104, 271
Hpy166II	GTNNAC	3 cut(s)	213, 316, 566
Hpy188I	TCNGA	6 cut(s)	43, 456, 516, 643, 697, 706
Hpy188III	TCNNGA	5 cut(s)	162, 176, 299, 587, 653
Hpy8I	GTNNAC	3 cut(s)	213, 316, 566
Hpy99I	CGWCG	1 cut(s)	240
HpyAV	CCTTC	3 cut(s)	353, 421, 502
HpyCH4III	ACNGT	5 cut(s)	117, 170, 217, 236, 629
HpyCH4IV	ACGT	1 cut(s)	568
HpyCH4V	TGCA	2 cut(s)	371, 578
HpyF3I	CTNAG	5 cut(s)	88, 377, 542, 696, 703
HpySE526I	ACGT	1 cut(s)	568
Hsp92II	CATG	1 cut(s)	259
Ksp22I	TGATCA	2 cut(s)	492, 631
Kzo9I	GATC	6 cut(s)	476, 492, 511, 534, 589, 631
LmnI	GCTCC	2 cut(s)	430, 526
LpnPI	CCDG	8 cut(s)	75, 184, 192, 254, 281, 304, 360, 465
Lsp1109I	GCAGC	2 cut(s)	355, 590
MaeI	CTAG	2 cut(s)	162, 680
MaeII	ACGT	1 cut(s)	568
MaeIII	GTNAC	3 cut(s)	299, 349, 412
MalI	GATC	6 cut(s)	478, 494, 513, 536, 591, 633
MboI	GATC	6 cut(s)	476, 492, 511, 534, 589, 631
MboII	GAAGA	2 cut(s)	326, 676
MfeI	CAATTG	1 cut(s)	593
MflI	RGATCY	1 cut(s)	476
MhlI	GDGCHC	3 cut(s)	89, 175, 435
MlsI	TGGCCA	1 cut(s)	267
MluCI	AATT	2 cut(s)	519, 593
MluNI	TGGCCA	1 cut(s)	267
MlyI	GAGTC	1 cut(s)	695
MnlI	CCTC	7 cut(s)	237, 283, 348, 372, 467, 493, 691
Mox20I	TGGCCA	1 cut(s)	267
MroXI	GAANNNNTTC	1 cut(s)	648
MscI	TGGCCA	1 cut(s)	267
MseI	TTAA	2 cut(s)	389, 446
MslI	CAYNNNNRTG	2 cut(s)	146, 446
Msp20I	TGGCCA	1 cut(s)	267
MspR9I	CCNGG	1 cut(s)	269
MunI	CAATTG	1 cut(s)	593
MvaI	CCWGG	1 cut(s)	269
NdeII	GATC	6 cut(s)	476, 492, 511, 534, 589, 631
NlaIII	CATG	1 cut(s)	259
NmuCI	GTSAC	2 cut(s)	299, 349
PaeR7I	CTCGAG	1 cut(s)	174
PdmI	GAANNNNTTC	1 cut(s)	648
PfeI	GAWTC	2 cut(s)	38, 223
PkrI	GCNGC	2 cut(s)	370, 580
Ple19I	CGATCG	1 cut(s)	537
PleI	GAGTC	1 cut(s)	695
PpsI	GAGTC	1 cut(s)	695
PshBI	ATTAAT	1 cut(s)	446
Psp6I	CCWGG	1 cut(s)	267
PspGI	CCWGG	1 cut(s)	267
PsuI	RGATCY	1 cut(s)	476
PvuI	CGATCG	1 cut(s)	537
RsaI	GTAC	1 cut(s)	317
RsaNI	GTAC	1 cut(s)	316
RseI	CAYNNNNRTG	2 cut(s)	146, 446
SaqAI	TTAA	2 cut(s)	389, 446
SatI	GCNGC	2 cut(s)	369, 579
Sau3AI	GATC	6 cut(s)	476, 492, 511, 534, 589, 631
SchI	GAGTC	1 cut(s)	695
ScrFI	CCNGG	1 cut(s)	269
SduI	GDGCHC	3 cut(s)	89, 175, 435
SetI	ASST	7 cut(s)	66, 94, 364, 388, 491, 531, 571
Sfr274I	CTCGAG	1 cut(s)	174
SlaI	CTCGAG	1 cut(s)	174
SmiMI	CAYNNNNRTG	2 cut(s)	146, 446
SmlI	CTYRAG	1 cut(s)	174
SmoI	CTYRAG	1 cut(s)	174
Sse9I	AATT	2 cut(s)	519, 593
SsiI	CCGC	1 cut(s)	344
SspMI	CTAG	2 cut(s)	162, 680
StyD4I	CCNGG	1 cut(s)	267
TaaI	ACNGT	5 cut(s)	117, 170, 217, 236, 629
TaiI	ACGT	1 cut(s)	571
TaqI	TCGA	4 cut(s)	175, 242, 284, 537
TasI	AATT	2 cut(s)	519, 593
TatI	WGTACW	1 cut(s)	315
TfiI	GAWTC	2 cut(s)	38, 223
Tru1I	TTAA	2 cut(s)	389, 446
Tru9I	TTAA	2 cut(s)	389, 446
TscAI	CASTG	3 cut(s)	175, 211, 634
TseFI	GTSAC	2 cut(s)	299, 349
TseI	GCWGC	2 cut(s)	368, 578
Tsp45I	GTSAC	2 cut(s)	299, 349
TspDTI	ATGAA	2 cut(s)	215, 263
TspGWI	ACGGA	1 cut(s)	456
TspRI	CASTG	3 cut(s)	175, 211, 634
VspI	ATTAAT	1 cut(s)	446
XagI	CCTNNNNNAGG	1 cut(s)	141
XbaI	TCTAGA	1 cut(s)	161
XhoI	CTCGAG	1 cut(s)	174
XmnI	GAANNNNTTC	1 cut(s)	648
XspI	CTAG	2 cut(s)	162, 680

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.