Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0003595

Physical Location & Seq

Genomic Coordinates Forward (+)

18972220 .. 18975517

Gene Structure 3298 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g23120.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGGATTCAAGCAATGGTGATGAGGCAGTTGGAGGCAGTGGGATGTCTGAAAAATCAAACATCATTGTAAAGAGTGATTCCTTTGGAACCCGCAACAGCACCAAGGAGAAGGCCTTGGGTTCAGGTGTTGGGAAAGAAACGTTTTTCAGGGCGGATCAGATTGATTTCAAGAGCTGGGATATCCAGCTGGAGAAGCACTTGAGTAAGGGCTGGTCCAGGGAGAAGGAAGCGCATACTCCAATGGAGGAGTGGGAGATTGATTTGGTGAAGATATTGGATTGGGGTGAGGACAATATTGCCACAGCTGCTGAAACTGCTGCTCTTCGGGCTTCATTTCAGCAAGAGGTTGCTGTCTGGCATAAGCTTGACCATCCAAACATTCCGAAGTTTGTTGGAGCTTCAATGGGAACTTCGAATCTTAAAATCCCTACCAAAGACACATCAAGTGGTGGTCATAGTCATAATTCTCCTCCTTCCAGAGCTTGTTGTGTTGTTGTTGAGTATGTTCCTGGTGGGACACTAAAGAACTATTTGATCAGGAATAGAAGAAAGAAACTTGCCTTTAAGATTGTGGTTCAACTTGCTTTGGATTTGTCCAAGGGTTTAAGTTATCTCCATGCAAAGAAAATTGTACACCGTGACGTCAAAACAGAAAATGTGTTGCTAGATAAAAATAGAACTCTGAAAATTGCTGATTTTGGCGTTGCTCGAGTAGAAGCTCAGAATCCAAGGGACATGACTGGGGAGACTGGTACCCTTGGATACATGGCCCCAGAGGTCCTTGACGGTAAGCCTTACAACAGAAAATGTGACGTCTATAGTTTTGGTATTTGCTTATGGGAAATCTATTGTTGCGACATGCCTTATCCCAATCTCAGTTTTGCTGATGTCTCCTCTGCTGTCGTGCGGCAGAATTTAAGACCTGAAATCCCAAGATGTTGTCCAACTGCGCTGGCTAGCATTATGCGAAAATGTTGGGATGCAAACCCGGATAAACGCCCTGACATGGAAGAAGTGGTGAAGTTATTGTATGCAGTGGACACGAGCAAGGGGGGTGGCATGATCCCGGAAGACCAAACTTCAGCCTGTTTCTGTTTCAGCACACCTCGAGGCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

373

Amino Acids

41.21

Weight (kDa)

7.52

Isoelectric Point (pI)

33.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	94 - 370	1.3e-59	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	97 - 370	1.3e-48	Protein kinase domain
Pkinase_fungal	PF17667	228 - 303	4.9e-06	Fungal protein kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003595)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22750 AT4G14780
fragaria_vesca	FvH4_2g23120 FvH4_2g23120 FvH4_4g00810 FvH4_4g00810 FvH4_4g00810
malus_domestica	MD03G1260300.v1.1 MD11G1280600.v1.1 MD13G1197700.v1.1 MD16G1197600.v1.1
prunus_persica	Prupe.1G019000_v2.0.a1 Prupe.8G236500_v2.0.a1
pyrus_communis	pycom11g24840 pycom13g17120 pycom16g16650
rosa_chinensis	RchiOBHm_Chr4g0387361 RchiOBHm_Chr6g0290371
rosa_laevigata	RLG00000010127 RLG00000012225
rosa_multiflora	Rmu_sc0000013.1_g000027 Rmu_ssc0000094.1_g000001
rosa_roxburghii	Rroxscaffold_5G00334090 Rroxscaffold_7G00177130
rosa_rugosa	Rorug03G0308900 Rorug06G0212000
rosa_samantha	Rh4BG010400 Rh4DG011300 Rh4DG011700 Rh6AG322300 Rh6BG329700 Rh6CG335700
rosa_wichuraiana	Rw4G000960 Rw6G027830 Rw6G027930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	645, 816
AbsI	CCTCGAGG	1 cut(s)	1107
Acc65I	GGTACC	1 cut(s)	752
AccB1I	GGYRCC	1 cut(s)	752
AciI	CCGC	3 cut(s)	91, 152, 907
AclI	AACGTT	1 cut(s)	140
AclWI	GGATC	2 cut(s)	162, 1057
AcsI	RAATTY	1 cut(s)	913
AcuI	CTGAAG	1 cut(s)	1065
AcyI	GRCGYC	2 cut(s)	642, 813
AfaI	GTAC	2 cut(s)	633, 754
AfiI	CCNNNNNNNGG	1 cut(s)	1006
AgsI	TTSAA	4 cut(s)	9, 169, 402, 578
AjnI	CCWGG	2 cut(s)	215, 508
AluBI	AGCT	7 cut(s)	174, 187, 305, 364, 398, 482, 719
AluI	AGCT	7 cut(s)	174, 187, 305, 364, 398, 482, 719
Alw26I	GTCTC	2 cut(s)	740, 895
AlwI	GGATC	2 cut(s)	162, 1057
AlwNI	CAGNNNCTG	1 cut(s)	308
Ama87I	CYCGRG	2 cut(s)	708, 1107
AoxI	GGCC	3 cut(s)	111, 768, 1111
ApeKI	GCWGC	2 cut(s)	305, 317
ApoI	RAATTY	1 cut(s)	913
Asp718I	GGTACC	1 cut(s)	752
AspLEI	GCGC	2 cut(s)	232, 952
AspS9I	GGNCC	4 cut(s)	213, 769, 778, 1112
AsuC2I	CCSGG	2 cut(s)	989, 1067
AsuHPI	GGTGA	4 cut(s)	29, 277, 296, 1030
AsuII	TTCGAA	1 cut(s)	413
AsuNHI	GCTAGC	1 cut(s)	956
AvaI	CYCGRG	2 cut(s)	708, 1107
AvaII	GGWCC	2 cut(s)	213, 778
BanI	GGYRCC	1 cut(s)	752
BauI	CACGAG	1 cut(s)	1042
BbsI	GAAGAC	1 cut(s)	1077
BbvI	GCAGC	2 cut(s)	292, 304
BccI	CCATC	1 cut(s)	378
BciT130I	CCWGG	2 cut(s)	217, 510
BciVI	GTATCC	1 cut(s)	755
BclI	TGATCA	1 cut(s)	534
BcnI	CCSGG	2 cut(s)	989, 1067
BcoDI	GTCTC	2 cut(s)	740, 895
BfaI	CTAG	2 cut(s)	665, 957
BfmI	CTRYAG	1 cut(s)	817
BfuI	GTATCC	1 cut(s)	755
BisI	GCNGC	3 cut(s)	306, 318, 908
BlsI	GCNGC	3 cut(s)	307, 319, 909
Bme1390I	CCNGG	4 cut(s)	217, 510, 989, 1067
Bme18I	GGWCC	2 cut(s)	213, 778
BmeT110I	CYCGRG	2 cut(s)	708, 1107
BmgT120I	GGNCC	4 cut(s)	213, 769, 778, 1112
BmiI	GGNNCC	3 cut(s)	88, 754, 771
BmrFI	CCNGG	4 cut(s)	217, 510, 989, 1067
BmrI	ACTGGG	1 cut(s)	750
BmsI	GCATC	1 cut(s)	970
BmtI	GCTAGC	1 cut(s)	960
BmuI	ACTGGG	1 cut(s)	750
BpiI	GAAGAC	1 cut(s)	1077
BpmI	CTGGAG	1 cut(s)	209
Bpu14I	TTCGAA	1 cut(s)	413
BpuEI	CTTGAG	1 cut(s)	220
BpuMI	CCSGG	2 cut(s)	989, 1067
BsaHI	GRCGYC	2 cut(s)	642, 813
BsaJI	CCNNGG	6 cut(s)	102, 114, 216, 597, 728, 757
Bsc4I	CCNNNNNNNGG	1 cut(s)	1006
Bse1I	ACTGG	2 cut(s)	745, 754
Bse3DI	GCAATG	1 cut(s)	19
BseBI	CCWGG	2 cut(s)	217, 510
BseDI	CCNNGG	6 cut(s)	102, 114, 216, 597, 728, 757
BseGI	GGATG	3 cut(s)	48, 370, 985
BseLI	CCNNNNNNNGG	1 cut(s)	1006
BseMI	GCAATG	1 cut(s)	19
BseMII	CTCAG	2 cut(s)	734, 889
BseNI	ACTGG	2 cut(s)	745, 754
BseRI	GAGGAG	3 cut(s)	260, 459, 883
BseXI	GCAGC	2 cut(s)	292, 304
BseYI	CCCAGC	1 cut(s)	174
BshFI	GGCC	3 cut(s)	113, 770, 1113
BshNI	GGYRCC	1 cut(s)	752
BsiHKCI	CYCGRG	2 cut(s)	708, 1107
BsiSI	CCGG	2 cut(s)	989, 1067
BslFI	GGGAC	2 cut(s)	529, 746
BslI	CCNNNNNNNGG	1 cut(s)	1006
BsmAI	GTCTC	2 cut(s)	740, 895
BsmFI	GGGAC	2 cut(s)	529, 746
BsnI	GGCC	3 cut(s)	113, 770, 1113
BsoBI	CYCGRG	2 cut(s)	708, 1107
Bsp119I	TTCGAA	1 cut(s)	413
Bsp1407I	TGTACA	1 cut(s)	631
Bsp143I	GATC	3 cut(s)	154, 534, 1062
BspACI	CCGC	3 cut(s)	91, 152, 907
BspANI	GGCC	3 cut(s)	113, 770, 1113
BspCNI	CTCAG	2 cut(s)	733, 888
BspLI	GGNNCC	3 cut(s)	88, 754, 771
BspOI	GCTAGC	1 cut(s)	960
BspPI	GGATC	2 cut(s)	162, 1057
BspQI	GCTCTTC	1 cut(s)	327
BspT104I	TTCGAA	1 cut(s)	413
BspT107I	GGYRCC	1 cut(s)	752
BsrDI	GCAATG	1 cut(s)	19
BsrGI	TGTACA	1 cut(s)	631
BsrI	ACTGG	2 cut(s)	745, 754
BssECI	CCNNGG	6 cut(s)	102, 114, 216, 597, 728, 757
BssMI	GATC	3 cut(s)	154, 534, 1062
BssNI	GRCGYC	2 cut(s)	642, 813
BssSI	CACGAG	1 cut(s)	1042
BssT1I	CCWWGG	5 cut(s)	102, 114, 597, 728, 757
Bst2BI	CACGAG	1 cut(s)	1042
Bst2UI	CCWGG	2 cut(s)	217, 510
Bst4CI	ACNGT	2 cut(s)	638, 788
Bst6I	CTCTTC	1 cut(s)	327
BstACI	GRCGYC	2 cut(s)	642, 813
BstAUI	TGTACA	1 cut(s)	631
BstBI	TTCGAA	1 cut(s)	413
BstC8I	GCNNGC	2 cut(s)	954, 958
BstDEI	CTNAG	2 cut(s)	720, 875
BstF5I	GGATG	3 cut(s)	48, 370, 985
BstHHI	GCGC	2 cut(s)	232, 952
BstKTI	GATC	3 cut(s)	157, 537, 1065
BstMAI	GTCTC	2 cut(s)	740, 895
BstMBI	GATC	3 cut(s)	154, 534, 1062
BstMWI	GCNNNNNNNGC	4 cut(s)	193, 305, 314, 326
BstNI	CCWGG	2 cut(s)	217, 510
BstNSI	RCATGY	1 cut(s)	862
BstSCI	CCNGG	4 cut(s)	215, 508, 987, 1065
BstSFI	CTRYAG	1 cut(s)	817
BstV1I	GCAGC	2 cut(s)	292, 304
BstV2I	GAAGAC	1 cut(s)	1077
BsuI	GTATCC	1 cut(s)	755
BsuRI	GGCC	3 cut(s)	113, 770, 1113
BtsCI	GGATG	3 cut(s)	48, 370, 985
BtsI	GCAGTG	2 cut(s)	43, 1041
BtsIMutI	CAGTG	2 cut(s)	43, 1041
Cac8I	GCNNGC	2 cut(s)	954, 958
CaiI	CAGNNNCTG	1 cut(s)	308
CfoI	GCGC	2 cut(s)	232, 952
Cfr13I	GGNCC	4 cut(s)	213, 769, 778, 1112
Csp6I	GTAC	2 cut(s)	632, 753
CspCI	CAANNNNNGTGG	2 cut(s)	1036, 1071
CviAII	CATG	6 cut(s)	617, 736, 766, 859, 1006, 1060
CviQI	GTAC	2 cut(s)	632, 753
DdeI	CTNAG	2 cut(s)	720, 875
DpnI	GATC	3 cut(s)	156, 536, 1064
DpnII	GATC	3 cut(s)	154, 534, 1062
Eam1104I	CTCTTC	1 cut(s)	327
EarI	CTCTTC	1 cut(s)	327
EciI	GGCGGA	1 cut(s)	167
Eco130I	CCWWGG	5 cut(s)	102, 114, 597, 728, 757
Eco147I	AGGCCT	1 cut(s)	113
Eco32I	GATATC	1 cut(s)	181
Eco47I	GGWCC	2 cut(s)	213, 778
Eco57I	CTGAAG	1 cut(s)	1065
Eco88I	CYCGRG	2 cut(s)	708, 1107
EcoO109I	RGGNCCY	2 cut(s)	778, 1112
EcoRII	CCWGG	2 cut(s)	215, 508
EcoRV	GATATC	1 cut(s)	181
EcoT14I	CCWWGG	5 cut(s)	102, 114, 597, 728, 757
ErhI	CCWWGG	5 cut(s)	102, 114, 597, 728, 757
FaeI	CATG	6 cut(s)	620, 739, 769, 862, 1009, 1063
FaqI	GGGAC	2 cut(s)	529, 746
FatI	CATG	6 cut(s)	616, 735, 765, 858, 1005, 1059
FauI	CCCGC	1 cut(s)	98
FbaI	TGATCA	1 cut(s)	534
Fnu4HI	GCNGC	3 cut(s)	306, 318, 908
FokI	GGATG	3 cut(s)	55, 357, 992
Fsp4HI	GCNGC	3 cut(s)	306, 318, 908
FspBI	CTAG	2 cut(s)	665, 957
GlaI	GCGC	2 cut(s)	231, 951
GluI	GCNGC	3 cut(s)	306, 318, 908
GsaI	CCCAGC	1 cut(s)	178
GsuI	CTGGAG	1 cut(s)	209
HaeIII	GGCC	3 cut(s)	113, 770, 1113
HapII	CCGG	2 cut(s)	989, 1067
HhaI	GCGC	2 cut(s)	232, 952
Hin1I	GRCGYC	2 cut(s)	642, 813
Hin1II	CATG	6 cut(s)	620, 739, 769, 862, 1009, 1063
Hin6I	GCGC	2 cut(s)	230, 950
HinP1I	GCGC	2 cut(s)	230, 950
HindIII	AAGCTT	1 cut(s)	362
HinfI	GANTC	4 cut(s)	5, 77, 415, 724
HpaII	CCGG	2 cut(s)	989, 1067
HphI	GGTGA	4 cut(s)	29, 277, 296, 1030
Hpy166II	GTNNAC	2 cut(s)	634, 1039
Hpy188I	TCNGA	5 cut(s)	49, 159, 384, 684, 723
Hpy188III	TCNNGA	3 cut(s)	169, 477, 538
Hpy8I	GTNNAC	2 cut(s)	634, 1039
HpyAV	CCTTC	3 cut(s)	103, 217, 483
HpyCH4III	ACNGT	2 cut(s)	638, 788
HpyCH4IV	ACGT	3 cut(s)	140, 642, 813
HpyCH4V	TGCA	3 cut(s)	620, 983, 1034
HpyF10VI	GCNNNNNNNGC	4 cut(s)	193, 305, 314, 326
HpyF3I	CTNAG	2 cut(s)	720, 875
HpySE526I	ACGT	3 cut(s)	140, 642, 813
Hsp92I	GRCGYC	2 cut(s)	642, 813
Hsp92II	CATG	6 cut(s)	620, 739, 769, 862, 1009, 1063
HspAI	GCGC	2 cut(s)	230, 950
KpnI	GGTACC	1 cut(s)	756
Ksp22I	TGATCA	1 cut(s)	534
Kzo9I	GATC	3 cut(s)	154, 534, 1062
LguI	GCTCTTC	1 cut(s)	327
LmnI	GCTCC	1 cut(s)	395
Lsp1109I	GCAGC	2 cut(s)	292, 304
LweI	GCATC	1 cut(s)	970
MaeI	CTAG	2 cut(s)	665, 957
MaeII	ACGT	3 cut(s)	140, 642, 813
MaeIII	GTNAC	2 cut(s)	638, 809
MalI	GATC	3 cut(s)	156, 536, 1064
MboI	GATC	3 cut(s)	154, 534, 1062
MboII	GAAGA	5 cut(s)	280, 314, 558, 1022, 1082
MluCI	AATT	4 cut(s)	463, 627, 687, 913
MmeI	TCCRAC	3 cut(s)	10, 373, 968
MseI	TTAA	4 cut(s)	420, 564, 605, 917
MspA1I	CMGCKG	2 cut(s)	187, 305
MspI	CCGG	2 cut(s)	989, 1067
MspR9I	CCNGG	4 cut(s)	217, 510, 989, 1067
MvaI	CCWGG	2 cut(s)	217, 510
MwoI	GCNNNNNNNGC	4 cut(s)	193, 305, 314, 326
NciI	CCSGG	2 cut(s)	989, 1067
NdeII	GATC	3 cut(s)	154, 534, 1062
NheI	GCTAGC	1 cut(s)	956
NlaIII	CATG	6 cut(s)	620, 739, 769, 862, 1009, 1063
NlaIV	GGNNCC	3 cut(s)	88, 754, 771
NmuCI	GTSAC	2 cut(s)	638, 809
NspI	RCATGY	1 cut(s)	862
NspV	TTCGAA	1 cut(s)	413
PaeR7I	CTCGAG	2 cut(s)	708, 1107
PceI	AGGCCT	1 cut(s)	113
PciSI	GCTCTTC	1 cut(s)	327
PfeI	GAWTC	4 cut(s)	5, 77, 415, 724
PfoI	TCCNGGA	1 cut(s)	1065
PkrI	GCNGC	3 cut(s)	307, 319, 909
PpuMI	RGGWCCY	1 cut(s)	778
Psp1406I	AACGTT	1 cut(s)	140
Psp5II	RGGWCCY	1 cut(s)	778
Psp6I	CCWGG	2 cut(s)	215, 508
PspFI	CCCAGC	1 cut(s)	174
PspGI	CCWGG	2 cut(s)	215, 508
PspN4I	GGNNCC	3 cut(s)	88, 754, 771
PspPI	GGNCC	4 cut(s)	213, 769, 778, 1112
PspPPI	RGGWCCY	1 cut(s)	778
PspXI	VCTCGAGB	2 cut(s)	708, 1107
PstNI	CAGNNNCTG	1 cut(s)	308
PvuII	CAGCTG	2 cut(s)	187, 305
RsaI	GTAC	2 cut(s)	633, 754
RsaNI	GTAC	2 cut(s)	632, 753
SapI	GCTCTTC	1 cut(s)	327
SaqAI	TTAA	4 cut(s)	420, 564, 605, 917
SatI	GCNGC	3 cut(s)	306, 318, 908
Sau3AI	GATC	3 cut(s)	154, 534, 1062
Sau96I	GGNCC	4 cut(s)	213, 769, 778, 1112
ScrFI	CCNGG	4 cut(s)	217, 510, 989, 1067
SfaNI	GCATC	1 cut(s)	970
SfcI	CTRYAG	1 cut(s)	817
Sfr274I	CTCGAG	2 cut(s)	708, 1107
SfuI	TTCGAA	1 cut(s)	413
SinI	GGWCC	2 cut(s)	213, 778
SlaI	CTCGAG	2 cut(s)	708, 1107
SmlI	CTYRAG	3 cut(s)	199, 708, 1107
SmoI	CTYRAG	3 cut(s)	199, 708, 1107
Sse9I	AATT	4 cut(s)	463, 627, 687, 913
SseBI	AGGCCT	1 cut(s)	113
SsiI	CCGC	3 cut(s)	91, 152, 907
SspI	AATATT	1 cut(s)	295
SspMI	CTAG	2 cut(s)	665, 957
StuI	AGGCCT	1 cut(s)	113
StyD4I	CCNGG	4 cut(s)	215, 508, 987, 1065
StyI	CCWWGG	5 cut(s)	102, 114, 597, 728, 757
TaaI	ACNGT	2 cut(s)	638, 788
TaiI	ACGT	3 cut(s)	143, 645, 816
TaqI	TCGA	3 cut(s)	413, 709, 1108
TasI	AATT	4 cut(s)	463, 627, 687, 913
TatI	WGTACW	1 cut(s)	631
TauI	GCSGC	1 cut(s)	910
TfiI	GAWTC	4 cut(s)	5, 77, 415, 724
Tru1I	TTAA	4 cut(s)	420, 564, 605, 917
Tru9I	TTAA	4 cut(s)	420, 564, 605, 917
TscAI	CASTG	2 cut(s)	43, 1041
TseFI	GTSAC	2 cut(s)	638, 809
TseI	GCWGC	2 cut(s)	305, 317
Tsp45I	GTSAC	2 cut(s)	638, 809
TspDTI	ATGAA	1 cut(s)	321
TspRI	CASTG	2 cut(s)	43, 1041
VpaK11BI	GGWCC	2 cut(s)	213, 778
XapI	RAATTY	1 cut(s)	913
XceI	RCATGY	1 cut(s)	862
XcmI	CCANNNNNNNNNTGG	1 cut(s)	246
XhoI	CTCGAG	2 cut(s)	708, 1107
XspI	CTAG	2 cut(s)	665, 957
ZraI	GACGTC	2 cut(s)	643, 814

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.