Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0003595

Physical Location & Seq

Genomic Coordinates Forward (+)

34718883 .. 34721516

Gene Structure 2634 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1260300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGAAGTTGAGGGGCTTCGAAGGTCGAGTAGTTTGGGTTCGAAGGGGAAGGATGTGGGAGGAGGGGTTGAGAAAGAGGTGTTTTTTTGGGCCGATAAGATCGATTTCAAGAGCTGGGATGTCCAGTTAGAGAAGCACTTGAGTAGGGGTTGGGAGATTGAGAGGGAAGTGAATGCAAAGATGGAAGAGTGGGAGATTGATTTGGCTAAGTTGGATATAAGACATGTTATTGCTCATGGAACGTATGGCACCGTGTACCACTGCGCCTATGACGGCCAAGATGTTGCAGATGAAAAATTTGATGCATTTGTTGGAGCTTCAATGGGAACTTCCAATCTTAAAATCCTTGTTAAAAACACATCAAACGATAATCATAAATGTCCTCCTTCCAGAGCTTGTTGCGTTGTTGTTGAGTATGTTCCTGGTGGGACGCTAAAGAACTTTTTGATCAGGAATAGAAGAAAGAACCCTGCCTTTAAGGTTGTGATTCAACTTGCTTTAGATTTCTCCAAAGGTTTGAGCTATCTTCACTCGAAGAAAATTGTACACCGTGACGTGAAAACAGAAAATATGATGCTAGATACTCGTACAACATTAAAAATTGCTGATTTTGGCGTTGCTCGAGTAGAAGCTCAGAACCCGATGGACATGACTGGAGAGACTAGTACCCTTGGGTACATGGCACCAGAGCTCCTTGATGGCAAGCCATACAACAGGAAATGCGACGTCTATAGTTTTGGTATTTGCTTATGGGAAATCTATTGCTGCGACATGCCTTATCCTAATCTAAGTTTTGCCGATGTCTCATCTGCAGTAGTGCGACAGAATTTACGACCAGAGATTCCAAGATGTTGCCCGAGCATATTGGCCAGCGCCATGCGGAAATGTAGGGTTGCAAGCCCGGATAAACGCCCTGAAATGGAAGAGGTAGTGAAGCTGTTGGATGCAATAGATACGAGCAAGGGAGGCGGCATGATACTTGAAAACCAGTCCACCGGCTGTTTCTGTTTCGGCACACCTCGCGGTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

344

Amino Acids

38.39

Weight (kDa)

7.01

Isoelectric Point (pI)

34.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	127 - 313	1.6e-46	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	131 - 312	3.4e-36	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003595)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22750 AT4G14780
fragaria_vesca	FvH4_2g23120 FvH4_2g23120 FvH4_4g00810 FvH4_4g00810 FvH4_4g00810
malus_domestica	MD03G1260300.v1.1 MD11G1280600.v1.1 MD13G1197700.v1.1 MD16G1197600.v1.1
prunus_persica	Prupe.1G019000_v2.0.a1 Prupe.8G236500_v2.0.a1
pyrus_communis	pycom11g24840 pycom13g17120 pycom16g16650
rosa_chinensis	RchiOBHm_Chr4g0387361 RchiOBHm_Chr6g0290371
rosa_laevigata	RLG00000010127 RLG00000012225
rosa_multiflora	Rmu_sc0000013.1_g000027 Rmu_ssc0000094.1_g000001
rosa_roxburghii	Rroxscaffold_5G00334090 Rroxscaffold_7G00177130
rosa_rugosa	Rorug03G0308900 Rorug06G0212000
rosa_samantha	Rh4BG010400 Rh4DG011300 Rh4DG011700 Rh6AG322300 Rh6BG329700 Rh6CG335700
rosa_wichuraiana	Rw4G000960 Rw6G027830 Rw6G027930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	729
AccB1I	GGYRCC	2 cut(s)	248, 682
AccII	CGCG	1 cut(s)	1023
AciI	CCGC	3 cut(s)	880, 969, 1023
AcoI	YGGCCR	2 cut(s)	274, 867
AcsI	RAATTY	2 cut(s)	296, 826
AcyI	GRCGYC	1 cut(s)	726
AfaI	GTAC	5 cut(s)	257, 546, 589, 667, 677
AfiI	CCNNNNNNNGG	1 cut(s)	919
AflIII	ACRYGT	1 cut(s)	223
AgsI	TTSAA	4 cut(s)	109, 321, 491, 983
AhlI	ACTAGT	1 cut(s)	662
AjiI	CACGTC	1 cut(s)	556
AjnI	CCWGG	1 cut(s)	421
AluBI	AGCT	7 cut(s)	114, 317, 395, 522, 632, 691, 937
AluI	AGCT	7 cut(s)	114, 317, 395, 522, 632, 691, 937
Alw21I	GWGCWC	1 cut(s)	693
Alw26I	GTCTC	2 cut(s)	653, 808
Ama87I	CYCGRG	2 cut(s)	621, 856
AoxI	GGCC	3 cut(s)	90, 274, 867
ApeKI	GCWGC	1 cut(s)	765
ApoI	RAATTY	2 cut(s)	296, 826
AspLEI	GCGC	2 cut(s)	266, 875
AspS9I	GGNCC	2 cut(s)	90, 1025
AsuC2I	CCSGG	1 cut(s)	902
AsuII	TTCGAA	2 cut(s)	19, 41
AvaI	CYCGRG	2 cut(s)	621, 856
AvaII	GGWCC	1 cut(s)	1025
BalI	TGGCCA	1 cut(s)	869
BanI	GGYRCC	2 cut(s)	248, 682
BanII	GRGCYC	1 cut(s)	693
Bbv12I	GWGCWC	1 cut(s)	693
BbvI	GCAGC	1 cut(s)	752
BccI	CCATC	3 cut(s)	175, 637, 692
BceAI	ACGGC	1 cut(s)	289
BciT130I	CCWGG	1 cut(s)	423
BclI	TGATCA	1 cut(s)	447
BcnI	CCSGG	1 cut(s)	902
BcoDI	GTCTC	2 cut(s)	653, 808
BcuI	ACTAGT	1 cut(s)	662
BfaI	CTAG	2 cut(s)	578, 663
BfmI	CTRYAG	2 cut(s)	730, 810
BfoI	RGCGCY	1 cut(s)	876
BisI	GCNGC	2 cut(s)	766, 970
BlsI	GCNGC	2 cut(s)	767, 971
Bme1390I	CCNGG	2 cut(s)	423, 902
Bme18I	GGWCC	1 cut(s)	1025
BmeT110I	CYCGRG	2 cut(s)	621, 856
BmgBI	CACGTC	1 cut(s)	556
BmgT120I	GGNCC	2 cut(s)	90, 1025
BmiI	GGNNCC	2 cut(s)	250, 684
BmrFI	CCNGG	2 cut(s)	423, 902
BmsI	GCATC	3 cut(s)	292, 564, 934
BpmI	CTGGAG	1 cut(s)	675
Bpu14I	TTCGAA	2 cut(s)	19, 41
BpuEI	CTTGAG	1 cut(s)	160
BpuMI	CCSGG	1 cut(s)	902
Bsa29I	ATCGAT	1 cut(s)	102
BsaHI	GRCGYC	1 cut(s)	726
BsaJI	CCNNGG	1 cut(s)	670
BsaXI	ACNNNNNCTCC	4 cut(s)	51, 81, 675, 705
Bsc4I	CCNNNNNNNGG	1 cut(s)	919
Bse118I	RCCGGY	1 cut(s)	995
Bse1I	ACTGG	3 cut(s)	124, 658, 988
BseBI	CCWGG	1 cut(s)	423
BseCI	ATCGAT	1 cut(s)	102
BseDI	CCNNGG	1 cut(s)	670
BseGI	GGATG	3 cut(s)	58, 124, 949
BseLI	CCNNNNNNNGG	1 cut(s)	919
BseMII	CTCAG	1 cut(s)	647
BseNI	ACTGG	3 cut(s)	124, 658, 988
BseRI	GAGGAG	1 cut(s)	75
BseXI	GCAGC	1 cut(s)	752
BseYI	CCCAGC	1 cut(s)	114
Bsh1236I	CGCG	1 cut(s)	1023
BshFI	GGCC	3 cut(s)	92, 276, 869
BshNI	GGYRCC	2 cut(s)	248, 682
BshVI	ATCGAT	1 cut(s)	102
BsiHKAI	GWGCWC	1 cut(s)	693
BsiHKCI	CYCGRG	2 cut(s)	621, 856
BsiSI	CCGG	2 cut(s)	902, 996
BslFI	GGGAC	1 cut(s)	442
BslI	CCNNNNNNNGG	1 cut(s)	919
BsmAI	GTCTC	2 cut(s)	653, 808
BsmFI	GGGAC	1 cut(s)	442
BsmI	GAATGC	1 cut(s)	178
BsnI	GGCC	3 cut(s)	92, 276, 869
BsoBI	CYCGRG	2 cut(s)	621, 856
Bsp119I	TTCGAA	2 cut(s)	19, 41
Bsp1286I	GDGCHC	1 cut(s)	693
Bsp1407I	TGTACA	1 cut(s)	544
Bsp143I	GATC	2 cut(s)	99, 447
BspACI	CCGC	3 cut(s)	880, 969, 1023
BspANI	GGCC	3 cut(s)	92, 276, 869
BspCNI	CTCAG	1 cut(s)	646
BspDI	ATCGAT	1 cut(s)	102
BspFNI	CGCG	1 cut(s)	1023
BspLI	GGNNCC	2 cut(s)	250, 684
BspMAI	CTGCAG	1 cut(s)	814
BspT104I	TTCGAA	2 cut(s)	19, 41
BspT107I	GGYRCC	2 cut(s)	248, 682
BsrFI	RCCGGY	1 cut(s)	995
BsrGI	TGTACA	1 cut(s)	544
BsrI	ACTGG	3 cut(s)	124, 658, 988
BssAI	RCCGGY	1 cut(s)	995
BssECI	CCNNGG	1 cut(s)	670
BssMI	GATC	2 cut(s)	99, 447
BssNI	GRCGYC	1 cut(s)	726
BssT1I	CCWWGG	1 cut(s)	670
Bst2UI	CCWGG	1 cut(s)	423
Bst4CI	ACNGT	2 cut(s)	253, 551
Bst6I	CTCTTC	2 cut(s)	180, 918
BstACI	GRCGYC	1 cut(s)	726
BstAUI	TGTACA	1 cut(s)	544
BstBI	TTCGAA	2 cut(s)	19, 41
BstC8I	GCNNGC	3 cut(s)	704, 871, 898
BstDEI	CTNAG	3 cut(s)	207, 633, 788
BstF5I	GGATG	3 cut(s)	58, 124, 949
BstFNI	CGCG	1 cut(s)	1023
BstH2I	RGCGCY	1 cut(s)	876
BstHHI	GCGC	2 cut(s)	266, 875
BstKTI	GATC	2 cut(s)	102, 450
BstMAI	GTCTC	2 cut(s)	653, 808
BstMBI	GATC	2 cut(s)	99, 447
BstMWI	GCNNNNNNNGC	2 cut(s)	966, 1020
BstNI	CCWGG	1 cut(s)	423
BstNSI	RCATGY	2 cut(s)	227, 775
BstSCI	CCNGG	2 cut(s)	421, 900
BstSFI	CTRYAG	2 cut(s)	730, 810
BstUI	CGCG	1 cut(s)	1023
BstV1I	GCAGC	1 cut(s)	752
Bsu15I	ATCGAT	1 cut(s)	102
BsuRI	GGCC	3 cut(s)	92, 276, 869
BsuTUI	ATCGAT	1 cut(s)	102
BtrI	CACGTC	1 cut(s)	556
BtsCI	GGATG	3 cut(s)	58, 124, 949
BtsI	GCAGTG	1 cut(s)	259
BtsIMutI	CAGTG	1 cut(s)	259
Cac8I	GCNNGC	3 cut(s)	704, 871, 898
CfoI	GCGC	2 cut(s)	266, 875
Cfr10I	RCCGGY	1 cut(s)	995
Cfr13I	GGNCC	2 cut(s)	90, 1025
ClaI	ATCGAT	1 cut(s)	102
CseI	GACGC	1 cut(s)	439
Csp6I	GTAC	5 cut(s)	256, 545, 588, 666, 676
CviAII	CATG	8 cut(s)	224, 236, 649, 679, 772, 877, 973, 1029
CviQI	GTAC	5 cut(s)	256, 545, 588, 666, 676
DdeI	CTNAG	3 cut(s)	207, 633, 788
DpnI	GATC	2 cut(s)	101, 449
DpnII	GATC	2 cut(s)	99, 447
EaeI	YGGCCR	2 cut(s)	274, 867
Eam1104I	CTCTTC	2 cut(s)	180, 918
EarI	CTCTTC	2 cut(s)	180, 918
Ecl136II	GAGCTC	1 cut(s)	691
Eco130I	CCWWGG	1 cut(s)	670
Eco24I	GRGCYC	1 cut(s)	693
Eco47I	GGWCC	1 cut(s)	1025
Eco53kI	GAGCTC	1 cut(s)	691
Eco88I	CYCGRG	2 cut(s)	621, 856
EcoICRI	GAGCTC	1 cut(s)	691
EcoRII	CCWGG	1 cut(s)	421
EcoT14I	CCWWGG	1 cut(s)	670
EcoT22I	ATGCAT	1 cut(s)	307
EcoT38I	GRGCYC	1 cut(s)	693
ErhI	CCWWGG	1 cut(s)	670
FaeI	CATG	8 cut(s)	227, 239, 652, 682, 775, 880, 976, 1032
FaqI	GGGAC	1 cut(s)	442
FatI	CATG	8 cut(s)	223, 235, 648, 678, 771, 876, 972, 1028
FbaI	TGATCA	1 cut(s)	447
Fnu4HI	GCNGC	2 cut(s)	766, 970
FokI	GGATG	3 cut(s)	65, 131, 956
FriOI	GRGCYC	1 cut(s)	693
Fsp4HI	GCNGC	2 cut(s)	766, 970
FspBI	CTAG	2 cut(s)	578, 663
GlaI	GCGC	2 cut(s)	265, 874
GluI	GCNGC	2 cut(s)	766, 970
GsaI	CCCAGC	1 cut(s)	118
GsuI	CTGGAG	1 cut(s)	675
HaeII	RGCGCY	1 cut(s)	876
HaeIII	GGCC	3 cut(s)	92, 276, 869
HapII	CCGG	2 cut(s)	902, 996
HgaI	GACGC	1 cut(s)	439
HhaI	GCGC	2 cut(s)	266, 875
Hin1I	GRCGYC	1 cut(s)	726
Hin1II	CATG	8 cut(s)	227, 239, 652, 682, 775, 880, 976, 1032
Hin6I	GCGC	2 cut(s)	264, 873
HinP1I	GCGC	2 cut(s)	264, 873
HinfI	GANTC	2 cut(s)	487, 841
HpaII	CCGG	2 cut(s)	902, 996
Hpy166II	GTNNAC	3 cut(s)	256, 547, 993
Hpy188I	TCNGA	1 cut(s)	636
Hpy188III	TCNNGA	3 cut(s)	109, 390, 451
Hpy8I	GTNNAC	3 cut(s)	256, 547, 993
Hpy99I	CGWCG	1 cut(s)	728
HpyAV	CCTTC	4 cut(s)	15, 37, 43, 396
HpyCH4III	ACNGT	2 cut(s)	253, 551
HpyCH4IV	ACGT	3 cut(s)	242, 555, 726
HpyCH4V	TGCA	6 cut(s)	176, 287, 305, 812, 896, 947
HpyF10VI	GCNNNNNNNGC	2 cut(s)	966, 1020
HpyF3I	CTNAG	3 cut(s)	207, 633, 788
HpySE526I	ACGT	3 cut(s)	242, 555, 726
Hsp92I	GRCGYC	1 cut(s)	726
Hsp92II	CATG	8 cut(s)	227, 239, 652, 682, 775, 880, 976, 1032
HspAI	GCGC	2 cut(s)	264, 873
Ksp22I	TGATCA	1 cut(s)	447
Kzo9I	GATC	2 cut(s)	99, 447
LmnI	GCTCC	2 cut(s)	314, 696
Lsp1109I	GCAGC	1 cut(s)	752
LweI	GCATC	3 cut(s)	292, 564, 934
MaeI	CTAG	2 cut(s)	578, 663
MaeII	ACGT	3 cut(s)	242, 555, 726
MaeIII	GTNAC	1 cut(s)	551
MalI	GATC	2 cut(s)	101, 449
MboI	GATC	2 cut(s)	99, 447
MboII	GAAGA	5 cut(s)	197, 471, 518, 547, 935
MhlI	GDGCHC	1 cut(s)	693
MlsI	TGGCCA	1 cut(s)	869
MluCI	AATT	4 cut(s)	296, 540, 600, 826
MluNI	TGGCCA	1 cut(s)	869
MmeI	TCCRAC	3 cut(s)	192, 292, 921
MnlI	CCTC	9 cut(s)	4, 53, 56, 70, 156, 393, 919, 959, 1029
Mox20I	TGGCCA	1 cut(s)	869
Mph1103I	ATGCAT	1 cut(s)	307
MscI	TGGCCA	1 cut(s)	869
MseI	TTAA	4 cut(s)	339, 351, 477, 596
Msp20I	TGGCCA	1 cut(s)	869
MspI	CCGG	2 cut(s)	902, 996
MspR9I	CCNGG	2 cut(s)	423, 902
Mva1269I	GAATGC	1 cut(s)	178
MvaI	CCWGG	1 cut(s)	423
MvnI	CGCG	1 cut(s)	1023
MwoI	GCNNNNNNNGC	2 cut(s)	966, 1020
NciI	CCSGG	1 cut(s)	902
NdeII	GATC	2 cut(s)	99, 447
NlaIII	CATG	8 cut(s)	227, 239, 652, 682, 775, 880, 976, 1032
NlaIV	GGNNCC	2 cut(s)	250, 684
NmuCI	GTSAC	1 cut(s)	551
NsiI	ATGCAT	1 cut(s)	307
NspI	RCATGY	2 cut(s)	227, 775
NspV	TTCGAA	2 cut(s)	19, 41
PaeR7I	CTCGAG	1 cut(s)	621
PciI	ACATGT	1 cut(s)	223
PctI	GAATGC	1 cut(s)	178
PfeI	GAWTC	2 cut(s)	487, 841
PkrI	GCNGC	2 cut(s)	767, 971
PscI	ACATGT	1 cut(s)	223
Psp124BI	GAGCTC	1 cut(s)	693
Psp6I	CCWGG	1 cut(s)	421
PspFI	CCCAGC	1 cut(s)	114
PspGI	CCWGG	1 cut(s)	421
PspN4I	GGNNCC	2 cut(s)	250, 684
PspPI	GGNCC	2 cut(s)	90, 1025
PspXI	VCTCGAGB	1 cut(s)	621
PsrI	GAACNNNNNNTAC	2 cut(s)	22, 54
PstI	CTGCAG	1 cut(s)	814
RsaI	GTAC	5 cut(s)	257, 546, 589, 667, 677
RsaNI	GTAC	5 cut(s)	256, 545, 588, 666, 676
SacI	GAGCTC	1 cut(s)	693
SaqAI	TTAA	4 cut(s)	339, 351, 477, 596
SatI	GCNGC	2 cut(s)	766, 970
Sau3AI	GATC	2 cut(s)	99, 447
Sau96I	GGNCC	2 cut(s)	90, 1025
ScrFI	CCNGG	2 cut(s)	423, 902
SduI	GDGCHC	1 cut(s)	693
SfaNI	GCATC	3 cut(s)	292, 564, 934
SfcI	CTRYAG	2 cut(s)	730, 810
Sfr274I	CTCGAG	1 cut(s)	621
SfuI	TTCGAA	2 cut(s)	19, 41
SinI	GGWCC	1 cut(s)	1025
SlaI	CTCGAG	1 cut(s)	621
SmlI	CTYRAG	2 cut(s)	139, 621
SmoI	CTYRAG	2 cut(s)	139, 621
SpeI	ACTAGT	1 cut(s)	662
Sse9I	AATT	4 cut(s)	296, 540, 600, 826
SsiI	CCGC	3 cut(s)	880, 969, 1023
SspMI	CTAG	2 cut(s)	578, 663
SstI	GAGCTC	1 cut(s)	693
StyD4I	CCNGG	2 cut(s)	421, 900
StyI	CCWWGG	1 cut(s)	670
TaaI	ACNGT	2 cut(s)	253, 551
TaiI	ACGT	3 cut(s)	245, 558, 729
TaqI	TCGA	6 cut(s)	19, 26, 41, 102, 533, 622
TasI	AATT	4 cut(s)	296, 540, 600, 826
TatI	WGTACW	1 cut(s)	544
TauI	GCSGC	1 cut(s)	972
TfiI	GAWTC	2 cut(s)	487, 841
Tru1I	TTAA	4 cut(s)	339, 351, 477, 596
Tru9I	TTAA	4 cut(s)	339, 351, 477, 596
TscAI	CASTG	1 cut(s)	266
TseFI	GTSAC	1 cut(s)	551
TseI	GCWGC	1 cut(s)	765
Tsp45I	GTSAC	1 cut(s)	551
TspDTI	ATGAA	1 cut(s)	306
TspRI	CASTG	1 cut(s)	266
VpaK11BI	GGWCC	1 cut(s)	1025
XapI	RAATTY	2 cut(s)	296, 826
XceI	RCATGY	2 cut(s)	227, 775
XhoI	CTCGAG	1 cut(s)	621
XspI	CTAG	2 cut(s)	578, 663
ZraI	GACGTC	1 cut(s)	727
Zsp2I	ATGCAT	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.