MD16G1197600.v1.1

serine threonine-protein kinase HT1-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Reverse (-)
17692669 .. 17702560
9892 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1197600.v1.1.491

Sequence Viewer

Length: 1221 bp
ATGGATTCAAGGACAAGTGAGAATGTTGAAGTTGCGGATGTACCAAACATGGTGGATCACTTGAAAGGTAATATGAAGTCAAAGCTCAGAAGTGCAGGGAGTGTGAGTTTCAAAGAGGTGGAACCAAATATTACGGGCACAGGAAGTATTAGTAACAAAGAGATGATCTTCCGAGCGGATAAAATCGATTTGAAGAACTTAGATATACAGCTTGAGAAGCATTTGAGCCGGGTTTGGTCCAAAAACATTGAGAGAACCAGGCCTAAGGAAGAATGGGAGATTGATTTAGCTAAATTGGAAATAAGATACATTGTAGCTCGAGGGACCTATGGTACCGTATTCAGGGGTACCTATGATGATCAAGATGTTGCAGTGAAGCTGTTGGACTGGGGGGAGGACGGCTATGCCACAGTTGCTGAAAGTGCTGCTCTGCGGGCATCGTTTCAAAAAGAAGTTGCTGTTTGGCACAAGCTTGACCATCCTAATGTTACAAAGTTCATTGGAGCTTCAATGGGAACTTCAGATCTTAAGATTCCTACAAAAGGCTCTTCAAGTGACGGTGTAATTTCACATCCTGCAAGAGCATGTTGTGTTATTGTGGAGTACGTCGCTGGTGGGACACTAAAGCAGTACTTGATAAGAAATAGGCATAAGAAACTTGCCTTTAAGGTTGTGGTCCAACTTGCTTTGGACCTTTCTAGAGGTCTTAGCTATCTGCATTCTCAGAAGATTGTACACCGTGATGTCAAGACAGAGAATATGCTACTTGATACTCGCATAAACCTTAAAATAGCTGATTTTGGTGTTGCTCGTGTTGAAGCTCAGAATCCAAGGGACATGACTGGTGAAACTGGTACCCTTGGATACATGGCTCCAGAGGTTTTGGATGGTAAGCCTTACAATAGAAGATGTGATGTCTATAGCTTTGGCATATGTCTATGGGAAATTTATTGCTGCGACATGCCCTACCCGGATCTTAGCTTTGCTGATGTTTCATCTGCGGTTGTTCGGCAGAACCTACGGCCAGAAATCCCCAAATGTTGTCCAAGTTCTTTGGCAAACATCATGCGCATGTGCTGGGATGGAAATGCAGATAAACGTCCTGAAATGGGTGAGGTGGTGAAACTGTTGGAAGCGATTGATACGAGCAAAGGAGGCGGAATGATACCTGAAGACCGTTCTCCGGGCTGTTTTTGTTTTGCTCCCACTCGCGGTCCATGA

Protein Analysis

407

Amino Acids

45.27

Weight (kDa)

7.52

Isoelectric Point (pI)

33.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 103 - 376 2e-55 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 105 - 374 7e-45 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1070
Acc65I GGTACC 3 cut(s) 332, 347, 854
AccB1I GGYRCC 3 cut(s) 332, 347, 854
AccBSI CCGCTC 1 cut(s) 176
AccII CGCG 1 cut(s) 1212
AciI CCGC 6 cut(s) 35, 176, 433, 1001, 1158, 1212
AclWI GGATC 2 cut(s) 63, 981
AcoI YGGCCR 1 cut(s) 1022
AcsI RAATTY 1 cut(s) 945
AcuI CTGAAG 2 cut(s) 504, 1191
AfaI GTAC 7 cut(s) 42, 334, 349, 605, 632, 735, 856
AfiI CCNNNNNNNGG 5 cut(s) 342, 542, 1109, 1183, 1211
AflII CTTAAG 1 cut(s) 527
AgsI TTSAA 9 cut(s) 9, 29, 64, 112, 193, 446, 510, 552, 818
AjnI CCWGG 1 cut(s) 257
AlwI GGATC 2 cut(s) 63, 981
AlwNI CAGNNNCTG 1 cut(s) 416
Ama87I CYCGRG 1 cut(s) 318
AoxI GGCC 2 cut(s) 260, 1022
ApeKI GCWGC 2 cut(s) 425, 954
ApoI RAATTY 1 cut(s) 945
Asp718I GGTACC 3 cut(s) 332, 347, 854
AspLEI GCGC 1 cut(s) 1071
AspS9I GGNCC 5 cut(s) 237, 324, 676, 691, 1214
AsuC2I CCSGG 3 cut(s) 230, 971, 1185
AsuHPI GGTGA 3 cut(s) 857, 1124, 1132
AvaI CYCGRG 1 cut(s) 318
AvaII GGWCC 5 cut(s) 237, 324, 676, 691, 1214
AxyI CCTNAGG 1 cut(s) 264
BaeGI GKGCMC 1 cut(s) 140
BanI GGYRCC 3 cut(s) 332, 347, 854
BauI CACGAG 1 cut(s) 810
BbsI GAAGAC 1 cut(s) 1179
BbvI GCAGC 2 cut(s) 412, 941
BccI CCATC 3 cut(s) 486, 881, 1076
BceAI ACGGC 2 cut(s) 415, 1037
BciT130I CCWGG 1 cut(s) 259
BciVI GTATCC 1 cut(s) 857
BclI TGATCA 1 cut(s) 358
BcnI CCSGG 3 cut(s) 230, 971, 1185
BfaI CTAG 1 cut(s) 699
BfmI CTRYAG 1 cut(s) 919
BfrI CTTAAG 1 cut(s) 527
BfuI GTATCC 1 cut(s) 857
BglII AGATCT 1 cut(s) 523
BisI GCNGC 2 cut(s) 426, 955
BlsI GCNGC 2 cut(s) 427, 956
BmcAI AGTACT 1 cut(s) 632
Bme1390I CCNGG 4 cut(s) 230, 259, 971, 1185
Bme18I GGWCC 5 cut(s) 237, 324, 676, 691, 1214
BmeT110I CYCGRG 1 cut(s) 318
BmgT120I GGNCC 5 cut(s) 237, 324, 676, 691, 1214
BmiI GGNNCC 6 cut(s) 123, 325, 334, 349, 856, 873
BmrFI CCNGG 4 cut(s) 230, 259, 971, 1185
BmrI ACTGGG 1 cut(s) 397
BmsI GCATC 1 cut(s) 446
BmuI ACTGGG 1 cut(s) 397
BpiI GAAGAC 1 cut(s) 1179
BpmI CTGGAG 1 cut(s) 858
BpuEI CTTGAG 1 cut(s) 233
BpuMI CCSGG 3 cut(s) 230, 971, 1185
Bsa29I ATCGAT 1 cut(s) 186
BsaJI CCNNGG 2 cut(s) 830, 859
BsaXI ACNNNNNCTCC 2 cut(s) 91, 121
Bsc4I CCNNNNNNNGG 5 cut(s) 342, 542, 1109, 1183, 1211
Bse1I ACTGG 3 cut(s) 392, 847, 856
Bse21I CCTNAGG 1 cut(s) 264
BseBI CCWGG 1 cut(s) 259
BseCI ATCGAT 1 cut(s) 186
BseDI CCNNGG 2 cut(s) 830, 859
BseGI GGATG 5 cut(s) 43, 478, 571, 892, 1087
BseLI CCNNNNNNNGG 5 cut(s) 342, 542, 1109, 1183, 1211
BseMII CTCAG 3 cut(s) 100, 737, 836
BseNI ACTGG 3 cut(s) 392, 847, 856
BseSI GKGCMC 1 cut(s) 140
BseXI GCAGC 2 cut(s) 412, 941
BseYI CCCAGC 1 cut(s) 1077
BsgI GTGCAG 1 cut(s) 114
Bsh1236I CGCG 1 cut(s) 1212
BshFI GGCC 2 cut(s) 262, 1024
BshNI GGYRCC 3 cut(s) 332, 347, 854
BshVI ATCGAT 1 cut(s) 186
BsiHKCI CYCGRG 1 cut(s) 318
BsiSI CCGG 3 cut(s) 229, 971, 1184
BslFI GGGAC 3 cut(s) 337, 631, 848
BslI CCNNNNNNNGG 5 cut(s) 342, 542, 1109, 1183, 1211
BsmFI GGGAC 3 cut(s) 337, 631, 848
BsmI GAATGC 1 cut(s) 718
BsnI GGCC 2 cut(s) 262, 1024
BsoBI CYCGRG 1 cut(s) 318
Bsp1286I GDGCHC 1 cut(s) 140
Bsp1407I TGTACA 1 cut(s) 733
Bsp143I GATC 5 cut(s) 55, 165, 358, 523, 973
BspACI CCGC 6 cut(s) 35, 176, 433, 1001, 1158, 1212
BspANI GGCC 2 cut(s) 262, 1024
BspCNI CTCAG 3 cut(s) 99, 736, 835
BspDI ATCGAT 1 cut(s) 186
BspFNI CGCG 1 cut(s) 1212
BspLI GGNNCC 6 cut(s) 123, 325, 334, 349, 856, 873
BspPI GGATC 2 cut(s) 63, 981
BspQI GCTCTTC 1 cut(s) 553
BspT107I GGYRCC 3 cut(s) 332, 347, 854
BspTI CTTAAG 1 cut(s) 527
BsrBI CCGCTC 1 cut(s) 176
BsrGI TGTACA 1 cut(s) 733
BsrI ACTGG 3 cut(s) 392, 847, 856
BssECI CCNNGG 2 cut(s) 830, 859
BssMI GATC 5 cut(s) 55, 165, 358, 523, 973
BssSI CACGAG 1 cut(s) 810
BssT1I CCWWGG 2 cut(s) 830, 859
Bst2BI CACGAG 1 cut(s) 810
Bst2UI CCWGG 1 cut(s) 259
Bst4CI ACNGT 6 cut(s) 337, 412, 560, 740, 1128, 1178
Bst6I CTCTTC 1 cut(s) 553
BstAFI CTTAAG 1 cut(s) 527
BstAUI TGTACA 1 cut(s) 733
BstC8I GCNNGC 1 cut(s) 435
BstDEI CTNAG 7 cut(s) 86, 199, 264, 707, 723, 822, 977
BstENI CCTNNNNNAGG 1 cut(s) 540
BstF5I GGATG 5 cut(s) 43, 478, 571, 892, 1087
BstFNI CGCG 1 cut(s) 1212
BstHHI GCGC 1 cut(s) 1071
BstKTI GATC 5 cut(s) 58, 168, 361, 526, 976
BstMBI GATC 5 cut(s) 55, 165, 358, 523, 973
BstMWI GCNNNNNNNGC 5 cut(s) 217, 413, 422, 434, 1155
BstNI CCWGG 1 cut(s) 259
BstNSI RCATGY 3 cut(s) 588, 964, 1075
BstSCI CCNGG 4 cut(s) 228, 257, 969, 1183
BstSFI CTRYAG 1 cut(s) 919
BstSLI GKGCMC 1 cut(s) 140
BstUI CGCG 1 cut(s) 1212
BstV1I GCAGC 2 cut(s) 412, 941
BstV2I GAAGAC 1 cut(s) 1179
BstX2I RGATCY 2 cut(s) 523, 973
BstYI RGATCY 2 cut(s) 523, 973
Bsu15I ATCGAT 1 cut(s) 186
Bsu36I CCTNAGG 1 cut(s) 264
BsuI GTATCC 1 cut(s) 857
BsuRI GGCC 2 cut(s) 262, 1024
BsuTUI ATCGAT 1 cut(s) 186
BtsCI GGATG 5 cut(s) 43, 478, 571, 892, 1087
BtsI GCAGTG 1 cut(s) 378
BtsIMutI CAGTG 1 cut(s) 378
Cac8I GCNNGC 1 cut(s) 435
CaiI CAGNNNCTG 1 cut(s) 416
CfoI GCGC 1 cut(s) 1071
Cfr13I GGNCC 5 cut(s) 237, 324, 676, 691, 1214
ClaI ATCGAT 1 cut(s) 186
Csp6I GTAC 7 cut(s) 41, 333, 348, 604, 631, 734, 855
CspCI CAANNNNNGTGG 2 cut(s) 33, 68
CviAII CATG 8 cut(s) 49, 585, 838, 868, 961, 1066, 1072, 1218
CviQI GTAC 7 cut(s) 41, 333, 348, 604, 631, 734, 855
DdeI CTNAG 7 cut(s) 86, 199, 264, 707, 723, 822, 977
DpnI GATC 5 cut(s) 57, 167, 360, 525, 975
DpnII GATC 5 cut(s) 55, 165, 358, 523, 973
EaeI YGGCCR 1 cut(s) 1022
Eam1104I CTCTTC 1 cut(s) 553
EarI CTCTTC 1 cut(s) 553
EciI GGCGGA 1 cut(s) 1173
Eco130I CCWWGG 2 cut(s) 830, 859
Eco147I AGGCCT 1 cut(s) 262
Eco47I GGWCC 5 cut(s) 237, 324, 676, 691, 1214
Eco57I CTGAAG 2 cut(s) 504, 1191
Eco81I CCTNAGG 1 cut(s) 264
Eco88I CYCGRG 1 cut(s) 318
EcoNI CCTNNNNNAGG 1 cut(s) 540
EcoO109I RGGNCCY 1 cut(s) 324
EcoRII CCWGG 1 cut(s) 257
EcoT14I CCWWGG 2 cut(s) 830, 859
ErhI CCWWGG 2 cut(s) 830, 859
FaeI CATG 8 cut(s) 52, 588, 841, 871, 964, 1069, 1075, 1221
FalI AAGNNNNNCTT 2 cut(s) 617, 649
FaqI GGGAC 3 cut(s) 337, 631, 848
FatI CATG 8 cut(s) 48, 584, 837, 867, 960, 1065, 1071, 1217
FauI CCCGC 1 cut(s) 426
FauNDI CATATG 1 cut(s) 932
FbaI TGATCA 1 cut(s) 358
Fnu4HI GCNGC 2 cut(s) 426, 955
FokI GGATG 5 cut(s) 50, 465, 558, 899, 1094
Fsp4HI GCNGC 2 cut(s) 426, 955
FspAI RTGCGCAY 1 cut(s) 1070
FspBI CTAG 1 cut(s) 699
FspI TGCGCA 1 cut(s) 1070
GlaI GCGC 1 cut(s) 1070
GluI GCNGC 2 cut(s) 426, 955
GsaI CCCAGC 1 cut(s) 1081
GsuI CTGGAG 1 cut(s) 858
HaeIII GGCC 2 cut(s) 262, 1024
HapII CCGG 3 cut(s) 229, 971, 1184
HhaI GCGC 1 cut(s) 1071
Hin1II CATG 8 cut(s) 52, 588, 841, 871, 964, 1069, 1075, 1221
Hin6I GCGC 1 cut(s) 1069
HinP1I GCGC 1 cut(s) 1069
HindIII AAGCTT 1 cut(s) 470
HinfI GANTC 3 cut(s) 5, 532, 826
HpaII CCGG 3 cut(s) 229, 971, 1184
HphI GGTGA 3 cut(s) 857, 1124, 1132
Hpy166II GTNNAC 1 cut(s) 736
Hpy188I TCNGA 5 cut(s) 89, 173, 523, 726, 825
Hpy188III TCNNGA 5 cut(s) 362, 699, 748, 875, 1103
Hpy8I GTNNAC 1 cut(s) 736
Hpy99I CGWCG 1 cut(s) 611
HpyCH4III ACNGT 6 cut(s) 337, 412, 560, 740, 1128, 1178
HpyCH4IV ACGT 2 cut(s) 606, 1099
HpyCH4V TGCA 5 cut(s) 95, 371, 578, 718, 1091
HpyF10VI GCNNNNNNNGC 5 cut(s) 217, 413, 422, 434, 1155
HpyF3I CTNAG 7 cut(s) 86, 199, 264, 707, 723, 822, 977
HpySE526I ACGT 2 cut(s) 606, 1099
Hsp92II CATG 8 cut(s) 52, 588, 841, 871, 964, 1069, 1075, 1221
HspAI GCGC 1 cut(s) 1069
KpnI GGTACC 3 cut(s) 336, 351, 858
Ksp22I TGATCA 1 cut(s) 358
Kzo9I GATC 5 cut(s) 55, 165, 358, 523, 973
LguI GCTCTTC 1 cut(s) 553
LmnI GCTCC 3 cut(s) 503, 877, 1207
Lsp1109I GCAGC 2 cut(s) 412, 941
LweI GCATC 1 cut(s) 446
MaeI CTAG 1 cut(s) 699
MaeII ACGT 2 cut(s) 606, 1099
MaeIII GTNAC 3 cut(s) 152, 487, 554
MalI GATC 5 cut(s) 57, 167, 360, 525, 975
MbiI CCGCTC 1 cut(s) 176
MboI GATC 5 cut(s) 55, 165, 358, 523, 973
MboII GAAGA 7 cut(s) 160, 205, 281, 540, 739, 918, 1184
MflI RGATCY 2 cut(s) 523, 973
MhlI GDGCHC 1 cut(s) 140
MluCI AATT 3 cut(s) 293, 564, 945
MmeI TCCRAC 3 cut(s) 363, 703, 1110
MnlI CCTC 7 cut(s) 109, 314, 388, 695, 871, 1108, 1148
MseI TTAA 3 cut(s) 528, 666, 786
MslI CAYNNNNRTG 3 cut(s) 483, 741, 1070
MspCI CTTAAG 1 cut(s) 527
MspI CCGG 3 cut(s) 229, 971, 1184
MspR9I CCNGG 4 cut(s) 230, 259, 971, 1185
Mva1269I GAATGC 1 cut(s) 718
MvaI CCWGG 1 cut(s) 259
MvnI CGCG 1 cut(s) 1212
MwoI GCNNNNNNNGC 5 cut(s) 217, 413, 422, 434, 1155
NciI CCSGG 3 cut(s) 230, 971, 1185
NdeI CATATG 1 cut(s) 932
NdeII GATC 5 cut(s) 55, 165, 358, 523, 973
NlaIII CATG 8 cut(s) 52, 588, 841, 871, 964, 1069, 1075, 1221
NlaIV GGNNCC 6 cut(s) 123, 325, 334, 349, 856, 873
NmuCI GTSAC 1 cut(s) 554
NsbI TGCGCA 1 cut(s) 1070
NspI RCATGY 3 cut(s) 588, 964, 1075
PaeR7I CTCGAG 1 cut(s) 318
PceI AGGCCT 1 cut(s) 262
PciSI GCTCTTC 1 cut(s) 553
PctI GAATGC 1 cut(s) 718
PfeI GAWTC 3 cut(s) 5, 532, 826
PkrI GCNGC 2 cut(s) 427, 956
PpuMI RGGWCCY 1 cut(s) 324
Psp5II RGGWCCY 1 cut(s) 324
Psp6I CCWGG 1 cut(s) 257
PspFI CCCAGC 1 cut(s) 1077
PspGI CCWGG 1 cut(s) 257
PspN4I GGNNCC 6 cut(s) 123, 325, 334, 349, 856, 873
PspPI GGNCC 5 cut(s) 237, 324, 676, 691, 1214
PspPPI RGGWCCY 1 cut(s) 324
PspXI VCTCGAGB 1 cut(s) 318
PstNI CAGNNNCTG 1 cut(s) 416
PsuI RGATCY 2 cut(s) 523, 973
RsaI GTAC 7 cut(s) 42, 334, 349, 605, 632, 735, 856
RsaNI GTAC 7 cut(s) 41, 333, 348, 604, 631, 734, 855
RseI CAYNNNNRTG 3 cut(s) 483, 741, 1070
SapI GCTCTTC 1 cut(s) 553
SaqAI TTAA 3 cut(s) 528, 666, 786
SatI GCNGC 2 cut(s) 426, 955
Sau3AI GATC 5 cut(s) 55, 165, 358, 523, 973
Sau96I GGNCC 5 cut(s) 237, 324, 676, 691, 1214
ScaI AGTACT 1 cut(s) 632
ScrFI CCNGG 4 cut(s) 230, 259, 971, 1185
SduI GDGCHC 1 cut(s) 140
SfaNI GCATC 1 cut(s) 446
SfcI CTRYAG 1 cut(s) 919
Sfr274I CTCGAG 1 cut(s) 318
SinI GGWCC 5 cut(s) 237, 324, 676, 691, 1214
SlaI CTCGAG 1 cut(s) 318
SmiMI CAYNNNNRTG 3 cut(s) 483, 741, 1070
SmlI CTYRAG 3 cut(s) 212, 318, 527
SmoI CTYRAG 3 cut(s) 212, 318, 527
Sse9I AATT 3 cut(s) 293, 564, 945
SseBI AGGCCT 1 cut(s) 262
SsiI CCGC 6 cut(s) 35, 176, 433, 1001, 1158, 1212
SspI AATATT 1 cut(s) 130
SspMI CTAG 1 cut(s) 699
StuI AGGCCT 1 cut(s) 262
StyD4I CCNGG 4 cut(s) 228, 257, 969, 1183
StyI CCWWGG 2 cut(s) 830, 859
TaaI ACNGT 6 cut(s) 337, 412, 560, 740, 1128, 1178
TaiI ACGT 2 cut(s) 609, 1102
TaqI TCGA 2 cut(s) 186, 319
TasI AATT 3 cut(s) 293, 564, 945
TatI WGTACW 2 cut(s) 630, 733
TfiI GAWTC 3 cut(s) 5, 532, 826
Tru1I TTAA 3 cut(s) 528, 666, 786
Tru9I TTAA 3 cut(s) 528, 666, 786
TscAI CASTG 1 cut(s) 378
TseFI GTSAC 1 cut(s) 554
TseI GCWGC 2 cut(s) 425, 954
Tsp45I GTSAC 1 cut(s) 554
TspDTI ATGAA 3 cut(s) 89, 487, 984
TspRI CASTG 1 cut(s) 378
Vha464I CTTAAG 1 cut(s) 527
VpaK11BI GGWCC 5 cut(s) 237, 324, 676, 691, 1214
XagI CCTNNNNNAGG 1 cut(s) 540
XapI RAATTY 1 cut(s) 945
XbaI TCTAGA 1 cut(s) 698
XceI RCATGY 3 cut(s) 588, 964, 1075
XhoI CTCGAG 1 cut(s) 318
XspI CTAG 1 cut(s) 699
ZrmI AGTACT 1 cut(s) 632
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.