Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0003595

Physical Location & Seq

Genomic Coordinates Forward (+)

39835556 .. 39838589

Gene Structure 3034 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1280600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGGAAGTTGAGGGTATTCAGAGGTCGAGAAGTTTGGGTTCCAAGGGGAAGGATGTGGGAGGAGGGGTTGATAAAGAGGTGTTTTTTCGTGCCGATAAGATCGATTTCAAGAGCTGGGATATCCAGTTGGAGAAGCACTTGAGTAGGGGTTGGGAGAGGGAGAGGGAGGCGAATGCAAAGATGGAAGAGTGGGAGATTGATTTGGGTAAGTTGGATATAAGACATGTTATTGCTCATGGAACCTATGGCACTGTGTACCGCGGCGCCTATGATGGCCAAGATGTTGCAGTGAAGATATTGGATTGGGGGGAGGATTGTATTGCCACAGCAGCTGAAACTGCTGCTCTTCGGGCGTCGTTTCAGCAAGAGGTTGCTGTATGGCATAAGCTTGACCACCCAAATATCCCCAAGTTTGTCGGAGCTTCAATGGGAACTTCCAACCTTAAAATCCCCGTTAAAAACGCATCAAACGATAGCCATAATTCTCCTCCTTCAAGAGCTTGTTGCGTTGTTGTTGAGTATGTTCCTGGTGGGACGCTGAAGAACTTTTTGATCAGGAATAGAAGAAAGAAACTTGCCTTCAAGGTTGTGATTCAACTTGCTTTGGATCTCTCCAAAGGTTTGAGTTATCTTCACACGAAGAAAATTGTACACCGTGATGTCAAAACGGAAAATATGTTGCTTGATACTCATAGAACATTGAAAATTGCTGATTTTGGTGTTGCTCGAGTGGAAGCTCAGAACCCAAGGGACATGACTGGGGAGACTGGTACCCTTGGGTACATGGCCCCAGAGGTCCTTGATGGCAAGCCATACAACAGGAAATGTGATGTCTATAGTTTTGGTATTTGCTTATGGGAAATCTATTGTTGCGACATGCCTTATCCTAATTTAAGTTTTGCTGATGTCTCATCTGCAGTAGTGCGACAGAATTTACGACCAGAAATCCCAAGATGTTGTCCGAGCACATTGGCTAGTGTCATGCGAAAATGCTGGGATGCAAGCCCGGATAAACGCCCTGAAATGGAAGAGGTTGTGAAACTGTTGTACGCAATAGATACGAGCAAGGGAGGCGGCATGATACCTGAAGACCAGTCAACCGGCTGTTTCTGTTTCGGCACACCTCGCGGTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

379

Amino Acids

42.22

Weight (kDa)

7.91

Isoelectric Point (pI)

32.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	72 - 348	1.7e-58	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	75 - 348	1.1e-47	Protein kinase domain
Pkinase_fungal	PF17667	206 - 281	9.5e-06	Fungal protein kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003595)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22750 AT4G14780
fragaria_vesca	FvH4_2g23120 FvH4_2g23120 FvH4_4g00810 FvH4_4g00810 FvH4_4g00810
malus_domestica	MD03G1260300.v1.1 MD11G1280600.v1.1 MD13G1197700.v1.1 MD16G1197600.v1.1
prunus_persica	Prupe.1G019000_v2.0.a1 Prupe.8G236500_v2.0.a1
pyrus_communis	pycom11g24840 pycom13g17120 pycom16g16650
rosa_chinensis	RchiOBHm_Chr4g0387361 RchiOBHm_Chr6g0290371
rosa_laevigata	RLG00000010127 RLG00000012225
rosa_multiflora	Rmu_sc0000013.1_g000027 Rmu_ssc0000094.1_g000001
rosa_roxburghii	Rroxscaffold_5G00334090 Rroxscaffold_7G00177130
rosa_rugosa	Rorug03G0308900 Rorug06G0212000
rosa_samantha	Rh4BG010400 Rh4DG011300 Rh4DG011700 Rh6AG322300 Rh6BG329700 Rh6CG335700
rosa_wichuraiana	Rw4G000960 Rw6G027830 Rw6G027930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	770
AccB1I	GGYRCC	2 cut(s)	263, 770
AccII	CGCG	2 cut(s)	261, 1128
AciI	CCGC	4 cut(s)	259, 261, 1074, 1128
AclWI	GGATC	1 cut(s)	615
AcoI	YGGCCR	1 cut(s)	274
AcsI	RAATTY	1 cut(s)	931
AcuI	CTGAAG	2 cut(s)	560, 1107
AcyI	GRCGYC	2 cut(s)	264, 353
AfaI	GTAC	5 cut(s)	257, 651, 772, 782, 1049
AfiI	CCNNNNNNNGG	1 cut(s)	1024
AflIII	ACRYGT	1 cut(s)	223
AgsI	TTSAA	6 cut(s)	109, 426, 495, 583, 596, 703
AjnI	CCWGG	1 cut(s)	526
AluBI	AGCT	6 cut(s)	114, 332, 388, 422, 500, 737
AluI	AGCT	6 cut(s)	114, 332, 388, 422, 500, 737
Alw21I	GWGCWC	1 cut(s)	968
Alw26I	GTCTC	2 cut(s)	758, 913
AlwI	GGATC	1 cut(s)	615
AlwNI	CAGNNNCTG	1 cut(s)	332
Ama87I	CYCGRG	1 cut(s)	726
AoxI	GGCC	2 cut(s)	274, 786
ApeKI	GCWGC	2 cut(s)	329, 341
ApoI	RAATTY	1 cut(s)	931
Asp718I	GGTACC	1 cut(s)	770
AspLEI	GCGC	1 cut(s)	266
AspS9I	GGNCC	3 cut(s)	787, 796, 1130
AsuC2I	CCSGG	1 cut(s)	1007
AvaI	CYCGRG	1 cut(s)	726
AvaII	GGWCC	2 cut(s)	796, 1130
BalI	TGGCCA	1 cut(s)	276
BanI	GGYRCC	2 cut(s)	263, 770
BbsI	GAAGAC	1 cut(s)	1095
Bbv12I	GWGCWC	1 cut(s)	968
BbvI	GCAGC	2 cut(s)	328, 341
BccI	CCATC	3 cut(s)	175, 266, 797
BciT130I	CCWGG	1 cut(s)	528
BclI	TGATCA	1 cut(s)	552
BcnI	CCSGG	1 cut(s)	1007
BcoDI	GTCTC	2 cut(s)	758, 913
BfaI	CTAG	1 cut(s)	975
BfmI	CTRYAG	2 cut(s)	835, 915
BfoI	RGCGCY	1 cut(s)	267
BisI	GCNGC	4 cut(s)	262, 330, 342, 1075
BlsI	GCNGC	4 cut(s)	263, 331, 343, 1076
Bme1390I	CCNGG	2 cut(s)	528, 1007
Bme18I	GGWCC	2 cut(s)	796, 1130
BmeT110I	CYCGRG	1 cut(s)	726
BmgT120I	GGNCC	3 cut(s)	787, 796, 1130
BmiI	GGNNCC	5 cut(s)	40, 241, 265, 772, 789
BmrFI	CCNGG	2 cut(s)	528, 1007
BmrI	ACTGGG	1 cut(s)	768
BmsI	GCATC	2 cut(s)	473, 988
BmuI	ACTGGG	1 cut(s)	768
BpiI	GAAGAC	1 cut(s)	1095
BpuEI	CTTGAG	1 cut(s)	160
BpuMI	CCSGG	1 cut(s)	1007
Bsa29I	ATCGAT	1 cut(s)	102
BsaHI	GRCGYC	2 cut(s)	264, 353
BsaJI	CCNNGG	4 cut(s)	42, 259, 746, 775
BsaXI	ACNNNNNCTCC	2 cut(s)	51, 81
Bsc4I	CCNNNNNNNGG	1 cut(s)	1024
Bse118I	RCCGGY	1 cut(s)	1100
Bse1I	ACTGG	4 cut(s)	124, 763, 772, 1093
BseBI	CCWGG	1 cut(s)	528
BseCI	ATCGAT	1 cut(s)	102
BseDI	CCNNGG	4 cut(s)	42, 259, 746, 775
BseGI	GGATG	2 cut(s)	58, 1003
BseLI	CCNNNNNNNGG	1 cut(s)	1024
BseMII	CTCAG	1 cut(s)	752
BseNI	ACTGG	4 cut(s)	124, 763, 772, 1093
BseRI	GAGGAG	2 cut(s)	75, 477
BseXI	GCAGC	2 cut(s)	328, 341
BseYI	CCCAGC	2 cut(s)	114, 993
Bsh1236I	CGCG	2 cut(s)	261, 1128
BshFI	GGCC	2 cut(s)	276, 788
BshNI	GGYRCC	2 cut(s)	263, 770
BshVI	ATCGAT	1 cut(s)	102
BsiHKAI	GWGCWC	1 cut(s)	968
BsiHKCI	CYCGRG	1 cut(s)	726
BsiSI	CCGG	2 cut(s)	1007, 1101
BslFI	GGGAC	2 cut(s)	547, 764
BslI	CCNNNNNNNGG	1 cut(s)	1024
BsmAI	GTCTC	2 cut(s)	758, 913
BsmFI	GGGAC	2 cut(s)	547, 764
BsmI	GAATGC	1 cut(s)	178
BsnI	GGCC	2 cut(s)	276, 788
BsoBI	CYCGRG	1 cut(s)	726
Bsp1286I	GDGCHC	1 cut(s)	968
Bsp1407I	TGTACA	1 cut(s)	649
Bsp143I	GATC	3 cut(s)	99, 552, 607
BspACI	CCGC	4 cut(s)	259, 261, 1074, 1128
BspANI	GGCC	2 cut(s)	276, 788
BspCNI	CTCAG	1 cut(s)	751
BspDI	ATCGAT	1 cut(s)	102
BspFNI	CGCG	2 cut(s)	261, 1128
BspLI	GGNNCC	5 cut(s)	40, 241, 265, 772, 789
BspMAI	CTGCAG	1 cut(s)	919
BspPI	GGATC	1 cut(s)	615
BspQI	GCTCTTC	1 cut(s)	351
BspT107I	GGYRCC	2 cut(s)	263, 770
BsrFI	RCCGGY	1 cut(s)	1100
BsrGI	TGTACA	1 cut(s)	649
BsrI	ACTGG	4 cut(s)	124, 763, 772, 1093
BssAI	RCCGGY	1 cut(s)	1100
BssECI	CCNNGG	4 cut(s)	42, 259, 746, 775
BssMI	GATC	3 cut(s)	99, 552, 607
BssNI	GRCGYC	2 cut(s)	264, 353
BssT1I	CCWWGG	3 cut(s)	42, 746, 775
Bst2UI	CCWGG	1 cut(s)	528
Bst4CI	ACNGT	3 cut(s)	253, 656, 1044
Bst6I	CTCTTC	3 cut(s)	180, 351, 1023
BstACI	GRCGYC	2 cut(s)	264, 353
BstAUI	TGTACA	1 cut(s)	649
BstC8I	GCNNGC	2 cut(s)	809, 1003
BstDEI	CTNAG	1 cut(s)	738
BstDSI	CCRYGG	1 cut(s)	259
BstF5I	GGATG	2 cut(s)	58, 1003
BstFNI	CGCG	2 cut(s)	261, 1128
BstH2I	RGCGCY	1 cut(s)	267
BstHHI	GCGC	1 cut(s)	266
BstKTI	GATC	3 cut(s)	102, 555, 610
BstMAI	GTCTC	2 cut(s)	758, 913
BstMBI	GATC	3 cut(s)	99, 552, 607
BstMWI	GCNNNNNNNGC	5 cut(s)	329, 338, 350, 1071, 1125
BstNI	CCWGG	1 cut(s)	528
BstNSI	RCATGY	2 cut(s)	227, 880
BstSCI	CCNGG	2 cut(s)	526, 1005
BstSFI	CTRYAG	2 cut(s)	835, 915
BstUI	CGCG	2 cut(s)	261, 1128
BstV1I	GCAGC	2 cut(s)	328, 341
BstV2I	GAAGAC	1 cut(s)	1095
BstX2I	RGATCY	1 cut(s)	607
BstYI	RGATCY	1 cut(s)	607
Bsu15I	ATCGAT	1 cut(s)	102
BsuRI	GGCC	2 cut(s)	276, 788
BsuTUI	ATCGAT	1 cut(s)	102
BtgI	CCRYGG	1 cut(s)	259
BtsCI	GGATG	2 cut(s)	58, 1003
BtsI	GCAGTG	1 cut(s)	294
BtsIMutI	CAGTG	2 cut(s)	249, 294
Cac8I	GCNNGC	2 cut(s)	809, 1003
CaiI	CAGNNNCTG	1 cut(s)	332
CfoI	GCGC	1 cut(s)	266
Cfr10I	RCCGGY	1 cut(s)	1100
Cfr13I	GGNCC	3 cut(s)	787, 796, 1130
Cfr42I	CCGCGG	1 cut(s)	262
ClaI	ATCGAT	1 cut(s)	102
CseI	GACGC	2 cut(s)	342, 544
Csp6I	GTAC	5 cut(s)	256, 650, 771, 781, 1048
CviAII	CATG	8 cut(s)	224, 236, 754, 784, 877, 982, 1078, 1134
CviQI	GTAC	5 cut(s)	256, 650, 771, 781, 1048
DdeI	CTNAG	1 cut(s)	738
DinI	GGCGCC	1 cut(s)	265
DpnI	GATC	3 cut(s)	101, 554, 609
DpnII	GATC	3 cut(s)	99, 552, 607
EaeI	YGGCCR	1 cut(s)	274
Eam1104I	CTCTTC	3 cut(s)	180, 351, 1023
EarI	CTCTTC	3 cut(s)	180, 351, 1023
Eco130I	CCWWGG	3 cut(s)	42, 746, 775
Eco32I	GATATC	1 cut(s)	121
Eco47I	GGWCC	2 cut(s)	796, 1130
Eco57I	CTGAAG	2 cut(s)	560, 1107
Eco88I	CYCGRG	1 cut(s)	726
EcoO109I	RGGNCCY	1 cut(s)	796
EcoRII	CCWGG	1 cut(s)	526
EcoRV	GATATC	1 cut(s)	121
EcoT14I	CCWWGG	3 cut(s)	42, 746, 775
EgeI	GGCGCC	1 cut(s)	265
EheI	GGCGCC	1 cut(s)	265
ErhI	CCWWGG	3 cut(s)	42, 746, 775
FaeI	CATG	8 cut(s)	227, 239, 757, 787, 880, 985, 1081, 1137
FaqI	GGGAC	2 cut(s)	547, 764
FatI	CATG	8 cut(s)	223, 235, 753, 783, 876, 981, 1077, 1133
FbaI	TGATCA	1 cut(s)	552
Fnu4HI	GCNGC	4 cut(s)	262, 330, 342, 1075
FokI	GGATG	2 cut(s)	65, 1010
Fsp4HI	GCNGC	4 cut(s)	262, 330, 342, 1075
FspBI	CTAG	1 cut(s)	975
GlaI	GCGC	1 cut(s)	265
GluI	GCNGC	4 cut(s)	262, 330, 342, 1075
GsaI	CCCAGC	2 cut(s)	118, 997
HaeII	RGCGCY	1 cut(s)	267
HaeIII	GGCC	2 cut(s)	276, 788
HapII	CCGG	2 cut(s)	1007, 1101
HgaI	GACGC	2 cut(s)	342, 544
HhaI	GCGC	1 cut(s)	266
Hin1I	GRCGYC	2 cut(s)	264, 353
Hin1II	CATG	8 cut(s)	227, 239, 757, 787, 880, 985, 1081, 1137
Hin6I	GCGC	1 cut(s)	264
HinP1I	GCGC	1 cut(s)	264
HincII	GTYRAC	1 cut(s)	1098
HindII	GTYRAC	1 cut(s)	1098
HindIII	AAGCTT	1 cut(s)	386
HinfI	GANTC	1 cut(s)	592
HpaII	CCGG	2 cut(s)	1007, 1101
Hpy166II	GTNNAC	3 cut(s)	256, 652, 1098
Hpy188I	TCNGA	4 cut(s)	21, 419, 741, 963
Hpy188III	TCNNGA	4 cut(s)	27, 109, 495, 556
Hpy8I	GTNNAC	3 cut(s)	256, 652, 1098
Hpy99I	CGWCG	1 cut(s)	358
HpyAV	CCTTC	3 cut(s)	43, 501, 589
HpyCH4III	ACNGT	3 cut(s)	253, 656, 1044
HpyCH4V	TGCA	4 cut(s)	176, 287, 917, 1001
HpyF10VI	GCNNNNNNNGC	5 cut(s)	329, 338, 350, 1071, 1125
HpyF3I	CTNAG	1 cut(s)	738
Hsp92I	GRCGYC	2 cut(s)	264, 353
Hsp92II	CATG	8 cut(s)	227, 239, 757, 787, 880, 985, 1081, 1137
HspAI	GCGC	1 cut(s)	264
KasI	GGCGCC	1 cut(s)	263
KpnI	GGTACC	1 cut(s)	774
Ksp22I	TGATCA	1 cut(s)	552
KspI	CCGCGG	1 cut(s)	262
Kzo9I	GATC	3 cut(s)	99, 552, 607
LguI	GCTCTTC	1 cut(s)	351
LmnI	GCTCC	1 cut(s)	419
Lsp1109I	GCAGC	2 cut(s)	328, 341
LweI	GCATC	2 cut(s)	473, 988
MaeI	CTAG	1 cut(s)	975
MalI	GATC	3 cut(s)	101, 554, 609
MboI	GATC	3 cut(s)	99, 552, 607
MboII	GAAGA	9 cut(s)	197, 304, 338, 553, 576, 623, 652, 1040, 1100
MflI	RGATCY	1 cut(s)	607
MhlI	GDGCHC	1 cut(s)	968
MlsI	TGGCCA	1 cut(s)	276
MluCI	AATT	5 cut(s)	481, 645, 705, 889, 931
MluNI	TGGCCA	1 cut(s)	276
Mly113I	GGCGCC	1 cut(s)	264
MmeI	TCCRAC	4 cut(s)	108, 192, 397, 462
Mox20I	TGGCCA	1 cut(s)	276
MscI	TGGCCA	1 cut(s)	276
MseI	TTAA	3 cut(s)	444, 456, 893
MslI	CAYNNNNRTG	1 cut(s)	657
Msp20I	TGGCCA	1 cut(s)	276
MspA1I	CMGCKG	2 cut(s)	261, 332
MspI	CCGG	2 cut(s)	1007, 1101
MspR9I	CCNGG	2 cut(s)	528, 1007
Mva1269I	GAATGC	1 cut(s)	178
MvaI	CCWGG	1 cut(s)	528
MvnI	CGCG	2 cut(s)	261, 1128
MwoI	GCNNNNNNNGC	5 cut(s)	329, 338, 350, 1071, 1125
NarI	GGCGCC	1 cut(s)	264
NciI	CCSGG	1 cut(s)	1007
NdeII	GATC	3 cut(s)	99, 552, 607
NlaIII	CATG	8 cut(s)	227, 239, 757, 787, 880, 985, 1081, 1137
NlaIV	GGNNCC	5 cut(s)	40, 241, 265, 772, 789
NspI	RCATGY	2 cut(s)	227, 880
PaeR7I	CTCGAG	1 cut(s)	726
PciI	ACATGT	1 cut(s)	223
PciSI	GCTCTTC	1 cut(s)	351
PcsI	WCGNNNNNNNCGW	1 cut(s)	468
PctI	GAATGC	1 cut(s)	178
PfeI	GAWTC	1 cut(s)	592
PkrI	GCNGC	4 cut(s)	263, 331, 343, 1076
PluTI	GGCGCC	1 cut(s)	267
PpuMI	RGGWCCY	1 cut(s)	796
PscI	ACATGT	1 cut(s)	223
Psp5II	RGGWCCY	1 cut(s)	796
Psp6I	CCWGG	1 cut(s)	526
PspFI	CCCAGC	2 cut(s)	114, 993
PspGI	CCWGG	1 cut(s)	526
PspN4I	GGNNCC	5 cut(s)	40, 241, 265, 772, 789
PspPI	GGNCC	3 cut(s)	787, 796, 1130
PspPPI	RGGWCCY	1 cut(s)	796
PspXI	VCTCGAGB	1 cut(s)	726
PstI	CTGCAG	1 cut(s)	919
PstNI	CAGNNNCTG	1 cut(s)	332
PsuI	RGATCY	1 cut(s)	607
PvuII	CAGCTG	1 cut(s)	332
RsaI	GTAC	5 cut(s)	257, 651, 772, 782, 1049
RsaNI	GTAC	5 cut(s)	256, 650, 771, 781, 1048
RseI	CAYNNNNRTG	1 cut(s)	657
SacII	CCGCGG	1 cut(s)	262
SapI	GCTCTTC	1 cut(s)	351
SaqAI	TTAA	3 cut(s)	444, 456, 893
SatI	GCNGC	4 cut(s)	262, 330, 342, 1075
Sau3AI	GATC	3 cut(s)	99, 552, 607
Sau96I	GGNCC	3 cut(s)	787, 796, 1130
ScrFI	CCNGG	2 cut(s)	528, 1007
SduI	GDGCHC	1 cut(s)	968
SfaNI	GCATC	2 cut(s)	473, 988
SfcI	CTRYAG	2 cut(s)	835, 915
SfoI	GGCGCC	1 cut(s)	265
Sfr274I	CTCGAG	1 cut(s)	726
Sfr303I	CCGCGG	1 cut(s)	262
SgrBI	CCGCGG	1 cut(s)	262
SinI	GGWCC	2 cut(s)	796, 1130
SlaI	CTCGAG	1 cut(s)	726
SmiMI	CAYNNNNRTG	1 cut(s)	657
SmlI	CTYRAG	2 cut(s)	139, 726
SmoI	CTYRAG	2 cut(s)	139, 726
Sse9I	AATT	5 cut(s)	481, 645, 705, 889, 931
SsiI	CCGC	4 cut(s)	259, 261, 1074, 1128
SspDI	GGCGCC	1 cut(s)	263
SspMI	CTAG	1 cut(s)	975
StyD4I	CCNGG	2 cut(s)	526, 1005
StyI	CCWWGG	3 cut(s)	42, 746, 775
TaaI	ACNGT	3 cut(s)	253, 656, 1044
TaqI	TCGA	3 cut(s)	26, 102, 727
TasI	AATT	5 cut(s)	481, 645, 705, 889, 931
TatI	WGTACW	1 cut(s)	649
TauI	GCSGC	2 cut(s)	264, 1077
TfiI	GAWTC	1 cut(s)	592
Tru1I	TTAA	3 cut(s)	444, 456, 893
Tru9I	TTAA	3 cut(s)	444, 456, 893
TscAI	CASTG	2 cut(s)	256, 294
TseI	GCWGC	2 cut(s)	329, 341
TspGWI	ACGGA	1 cut(s)	683
TspRI	CASTG	2 cut(s)	256, 294
VpaK11BI	GGWCC	2 cut(s)	796, 1130
XapI	RAATTY	1 cut(s)	931
XceI	RCATGY	2 cut(s)	227, 880
XhoI	CTCGAG	1 cut(s)	726
XspI	CTAG	1 cut(s)	975

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.