Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0003595

Physical Location & Seq

Genomic Coordinates Forward (+)

56288937 .. 56291349

Gene Structure 2413 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG329700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGGATTCAAGCAATGGTGGTGAGTCAGTTGGAGGCATTGGGATAACTGAAAAGTCAAACATCATTGAAAAAAATGATTCCTTTGGAACCCCCAACAGCACCAAAGAGAAGGCCTTGGGTTCATGTGTGGGGAAAGAAACGTTTTTTAGGGCGGATCAGATTGATTTCAAGAGCTGGGATATCCAGCTGGAGAAGCACTTGAGTAGGGGCTGGTCCAGGGAGAAGGAAGCGCAGACGTCAATGGAGGAGTGGGAGATTGATTTGGCTAAGTTGGATATAAGATATGTGATTGCTCATGGAACATATGGAACTGTGTACAGGGGTACCTATGATGGTCAAGATGTTGCAGTGAAGATATTGGATTGGGGTGAGGATAATATTGCCACAGCTGCTGAAACTGCTGCTCTTCGGGCGTCATTTCAGCAAGAGGTTGCTGTCTGGCATAAGCTTGACCATCCAAATATTCCCAAGTTTGTTGGAGCTTCAATGGGAACTTCGAATCTTAAAATCCCTGTCAAAGGCACATCAAGTGATGGTCAAAGTCATAATTCTCCTCCTTCCAGAGCTTGTTGTGTTGTTGTTGAGTATGTTCCTGGTGGGACACTAAAGAACTATTTGATCAGGAATAGTAGAAAGAAACTTGCCTTTAAGATTGTGGTTCAACTTGCTTTGGATTTGTCTAAAGGTTTAAGTTATCTCCATGCAAAGAAAATTGTACACCGTGACGTCAAAACAGAAAATGTGTTGCTAGATAATCATAGAACTCTGAAAATTGCTGATTTTGGCGTTGCTCGAGTAGAAGCTCAGAATCCAAGAGACATGACCGGGGAGACTGGTACCCTTGGATACATGGCCCCAGAGGTCCTTGATGGTAAGCCTTACAACAGAAAATGTGACGTGTACAGTTTTGGTATTTGCTTATGGGAAATCTATTGTTGCGACATGCCTTATCCCAATCTTAGTTTTGCTGATGTCTCCTCTGCTGTCGTGCGACAGAATTTAAGACCTGAAATCCCAAGATGTTGTCCAACTGCGCTGGCTAGCATTATGCGAAAATGTTGGGATGCAAACCCAGATAAACGCCCCGACATGGAAGAAGTAGTAAAGTTATTGTATGCAGTCGACACAAGCAAGGGAGGTGGCATGATCCCGGAAGACCAAGCTTCTGCCTGTTCCTGTTTCGGCACACCTCGAGGCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

400

Amino Acids

44.14

Weight (kDa)

6.47

Isoelectric Point (pI)

33.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	94 - 370	4.3e-59	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	97 - 370	1.9e-48	Protein kinase domain
Pkinase_fungal	PF17667	228 - 303	4.9e-06	Fungal protein kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003595)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22750 AT4G14780
fragaria_vesca	FvH4_2g23120 FvH4_2g23120 FvH4_4g00810 FvH4_4g00810 FvH4_4g00810
malus_domestica	MD03G1260300.v1.1 MD11G1280600.v1.1 MD13G1197700.v1.1 MD16G1197600.v1.1
prunus_persica	Prupe.1G019000_v2.0.a1 Prupe.8G236500_v2.0.a1
pyrus_communis	pycom11g24840 pycom13g17120 pycom16g16650
rosa_chinensis	RchiOBHm_Chr4g0387361 RchiOBHm_Chr6g0290371
rosa_laevigata	RLG00000010127 RLG00000012225
rosa_multiflora	Rmu_sc0000013.1_g000027 Rmu_ssc0000094.1_g000001
rosa_roxburghii	Rroxscaffold_5G00334090 Rroxscaffold_7G00177130
rosa_rugosa	Rorug03G0308900 Rorug06G0212000
rosa_samantha	Rh4BG010400 Rh4DG011300 Rh4DG011700 Rh6AG322300 Rh6BG329700 Rh6CG335700
rosa_wichuraiana	Rw4G000960 Rw6G027830 Rw6G027930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	239, 729
AbsI	CCTCGAGG	1 cut(s)	1191
Acc65I	GGTACC	2 cut(s)	323, 836
AccB1I	GGYRCC	2 cut(s)	323, 836
AccI	GTMKAC	1 cut(s)	1122
AciI	CCGC	1 cut(s)	152
AclI	AACGTT	1 cut(s)	140
AclWI	GGATC	2 cut(s)	162, 1141
AcsI	RAATTY	1 cut(s)	997
AcyI	GRCGYC	3 cut(s)	236, 413, 726
AfaI	GTAC	5 cut(s)	317, 325, 717, 838, 902
AfiI	CCNNNNNNNGG	2 cut(s)	518, 1090
AflIII	ACRYGT	1 cut(s)	897
AgsI	TTSAA	5 cut(s)	9, 68, 169, 486, 662
AjiI	CACGTC	1 cut(s)	898
AjnI	CCWGG	2 cut(s)	215, 592
AluBI	AGCT	8 cut(s)	174, 187, 389, 448, 482, 566, 803, 1163
AluI	AGCT	8 cut(s)	174, 187, 389, 448, 482, 566, 803, 1163
Alw26I	GTCTC	3 cut(s)	810, 824, 979
AlwI	GGATC	2 cut(s)	162, 1141
AlwNI	CAGNNNCTG	1 cut(s)	392
Ama87I	CYCGRG	2 cut(s)	792, 1191
AoxI	GGCC	3 cut(s)	111, 852, 1195
ApeKI	GCWGC	2 cut(s)	389, 401
ApoI	RAATTY	1 cut(s)	997
Asp718I	GGTACC	2 cut(s)	323, 836
AspLEI	GCGC	2 cut(s)	232, 1036
AspS9I	GGNCC	4 cut(s)	213, 853, 862, 1196
AsuC2I	CCSGG	2 cut(s)	826, 1151
AsuHPI	GGTGA	2 cut(s)	32, 380
AsuII	TTCGAA	1 cut(s)	497
AsuNHI	GCTAGC	1 cut(s)	1040
AvaI	CYCGRG	2 cut(s)	792, 1191
AvaII	GGWCC	2 cut(s)	213, 862
BaeI	ACNNNNGTAYC	2 cut(s)	307, 340
BanI	GGYRCC	2 cut(s)	323, 836
BbsI	GAAGAC	1 cut(s)	1161
BbvI	GCAGC	2 cut(s)	376, 388
BccI	CCATC	4 cut(s)	326, 462, 527, 863
BciT130I	CCWGG	2 cut(s)	217, 594
BciVI	GTATCC	1 cut(s)	839
BclI	TGATCA	1 cut(s)	618
BcnI	CCSGG	2 cut(s)	826, 1151
BcoDI	GTCTC	3 cut(s)	810, 824, 979
BfaI	CTAG	2 cut(s)	749, 1041
BfuI	GTATCC	1 cut(s)	839
BisI	GCNGC	2 cut(s)	390, 402
BlsI	GCNGC	2 cut(s)	391, 403
Bme1390I	CCNGG	4 cut(s)	217, 594, 826, 1151
Bme18I	GGWCC	2 cut(s)	213, 862
BmeT110I	CYCGRG	2 cut(s)	792, 1191
BmgBI	CACGTC	1 cut(s)	898
BmgT120I	GGNCC	4 cut(s)	213, 853, 862, 1196
BmiI	GGNNCC	4 cut(s)	88, 325, 838, 855
BmrFI	CCNGG	4 cut(s)	217, 594, 826, 1151
BmsI	GCATC	1 cut(s)	1054
BmtI	GCTAGC	1 cut(s)	1044
BpiI	GAAGAC	1 cut(s)	1161
BpmI	CTGGAG	1 cut(s)	209
Bpu14I	TTCGAA	1 cut(s)	497
BpuEI	CTTGAG	1 cut(s)	220
BpuMI	CCSGG	2 cut(s)	826, 1151
BsaHI	GRCGYC	3 cut(s)	236, 413, 726
BsaJI	CCNNGG	4 cut(s)	114, 216, 825, 841
Bsc4I	CCNNNNNNNGG	2 cut(s)	518, 1090
Bse1I	ACTGG	1 cut(s)	838
Bse3DI	GCAATG	1 cut(s)	19
BseBI	CCWGG	2 cut(s)	217, 594
BseDI	CCNNGG	4 cut(s)	114, 216, 825, 841
BseGI	GGATG	2 cut(s)	454, 1069
BseLI	CCNNNNNNNGG	2 cut(s)	518, 1090
BseMI	GCAATG	1 cut(s)	19
BseMII	CTCAG	1 cut(s)	818
BseNI	ACTGG	1 cut(s)	838
BseRI	GAGGAG	3 cut(s)	260, 543, 967
BseXI	GCAGC	2 cut(s)	376, 388
BseYI	CCCAGC	1 cut(s)	174
BshFI	GGCC	3 cut(s)	113, 854, 1197
BshNI	GGYRCC	2 cut(s)	323, 836
BsiHKCI	CYCGRG	2 cut(s)	792, 1191
BsiSI	CCGG	2 cut(s)	825, 1151
BslFI	GGGAC	1 cut(s)	613
BslI	CCNNNNNNNGG	2 cut(s)	518, 1090
BsmAI	GTCTC	3 cut(s)	810, 824, 979
BsmFI	GGGAC	1 cut(s)	613
BsnI	GGCC	3 cut(s)	113, 854, 1197
BsoBI	CYCGRG	2 cut(s)	792, 1191
Bsp119I	TTCGAA	1 cut(s)	497
Bsp1407I	TGTACA	3 cut(s)	315, 715, 900
Bsp143I	GATC	3 cut(s)	154, 618, 1146
BspACI	CCGC	1 cut(s)	152
BspANI	GGCC	3 cut(s)	113, 854, 1197
BspCNI	CTCAG	1 cut(s)	817
BspLI	GGNNCC	4 cut(s)	88, 325, 838, 855
BspOI	GCTAGC	1 cut(s)	1044
BspPI	GGATC	2 cut(s)	162, 1141
BspQI	GCTCTTC	1 cut(s)	411
BspT104I	TTCGAA	1 cut(s)	497
BspT107I	GGYRCC	2 cut(s)	323, 836
BsrDI	GCAATG	1 cut(s)	19
BsrGI	TGTACA	3 cut(s)	315, 715, 900
BsrI	ACTGG	1 cut(s)	838
BssECI	CCNNGG	4 cut(s)	114, 216, 825, 841
BssMI	GATC	3 cut(s)	154, 618, 1146
BssNI	GRCGYC	3 cut(s)	236, 413, 726
BssT1I	CCWWGG	2 cut(s)	114, 841
Bst2UI	CCWGG	2 cut(s)	217, 594
Bst4CI	ACNGT	3 cut(s)	313, 722, 905
Bst6I	CTCTTC	1 cut(s)	411
BstACI	GRCGYC	3 cut(s)	236, 413, 726
BstAUI	TGTACA	3 cut(s)	315, 715, 900
BstBI	TTCGAA	1 cut(s)	497
BstC8I	GCNNGC	2 cut(s)	1038, 1042
BstDEI	CTNAG	3 cut(s)	267, 804, 959
BstENI	CCTNNNNNAGG	1 cut(s)	516
BstF5I	GGATG	2 cut(s)	454, 1069
BstHHI	GCGC	2 cut(s)	232, 1036
BstKTI	GATC	3 cut(s)	157, 621, 1149
BstMAI	GTCTC	3 cut(s)	810, 824, 979
BstMBI	GATC	3 cut(s)	154, 618, 1146
BstMWI	GCNNNNNNNGC	4 cut(s)	193, 389, 398, 410
BstNI	CCWGG	2 cut(s)	217, 594
BstNSI	RCATGY	1 cut(s)	946
BstSCI	CCNGG	4 cut(s)	215, 592, 824, 1149
BstV1I	GCAGC	2 cut(s)	376, 388
BstV2I	GAAGAC	1 cut(s)	1161
BsuI	GTATCC	1 cut(s)	839
BsuRI	GGCC	3 cut(s)	113, 854, 1197
BtrI	CACGTC	1 cut(s)	898
BtsCI	GGATG	2 cut(s)	454, 1069
BtsI	GCAGTG	1 cut(s)	354
BtsIMutI	CAGTG	1 cut(s)	354
Cac8I	GCNNGC	2 cut(s)	1038, 1042
CaiI	CAGNNNCTG	1 cut(s)	392
CfoI	GCGC	2 cut(s)	232, 1036
Cfr13I	GGNCC	4 cut(s)	213, 853, 862, 1196
CseI	GACGC	1 cut(s)	402
Csp6I	GTAC	5 cut(s)	316, 324, 716, 837, 901
CspCI	CAANNNNNGTGG	2 cut(s)	1120, 1155
CviAII	CATG	8 cut(s)	123, 296, 701, 820, 850, 943, 1090, 1144
CviQI	GTAC	5 cut(s)	316, 324, 716, 837, 901
DdeI	CTNAG	3 cut(s)	267, 804, 959
DpnI	GATC	3 cut(s)	156, 620, 1148
DpnII	GATC	3 cut(s)	154, 618, 1146
Eam1104I	CTCTTC	1 cut(s)	411
EarI	CTCTTC	1 cut(s)	411
EciI	GGCGGA	1 cut(s)	167
Eco130I	CCWWGG	2 cut(s)	114, 841
Eco147I	AGGCCT	1 cut(s)	113
Eco32I	GATATC	1 cut(s)	181
Eco47I	GGWCC	2 cut(s)	213, 862
Eco88I	CYCGRG	2 cut(s)	792, 1191
EcoNI	CCTNNNNNAGG	1 cut(s)	516
EcoO109I	RGGNCCY	2 cut(s)	862, 1196
EcoRII	CCWGG	2 cut(s)	215, 592
EcoRV	GATATC	1 cut(s)	181
EcoT14I	CCWWGG	2 cut(s)	114, 841
ErhI	CCWWGG	2 cut(s)	114, 841
FaeI	CATG	8 cut(s)	126, 299, 704, 823, 853, 946, 1093, 1147
FaqI	GGGAC	1 cut(s)	613
FatI	CATG	8 cut(s)	122, 295, 700, 819, 849, 942, 1089, 1143
FauNDI	CATATG	1 cut(s)	304
FbaI	TGATCA	1 cut(s)	618
FblI	GTMKAC	1 cut(s)	1122
Fnu4HI	GCNGC	2 cut(s)	390, 402
FokI	GGATG	2 cut(s)	441, 1076
Fsp4HI	GCNGC	2 cut(s)	390, 402
FspBI	CTAG	2 cut(s)	749, 1041
GlaI	GCGC	2 cut(s)	231, 1035
GluI	GCNGC	2 cut(s)	390, 402
GsaI	CCCAGC	1 cut(s)	178
GsuI	CTGGAG	1 cut(s)	209
HaeIII	GGCC	3 cut(s)	113, 854, 1197
HapII	CCGG	2 cut(s)	825, 1151
HgaI	GACGC	1 cut(s)	402
HhaI	GCGC	2 cut(s)	232, 1036
Hin1I	GRCGYC	3 cut(s)	236, 413, 726
Hin1II	CATG	8 cut(s)	126, 299, 704, 823, 853, 946, 1093, 1147
Hin6I	GCGC	2 cut(s)	230, 1034
HinP1I	GCGC	2 cut(s)	230, 1034
HincII	GTYRAC	1 cut(s)	1123
HindII	GTYRAC	1 cut(s)	1123
HindIII	AAGCTT	2 cut(s)	446, 1161
HinfI	GANTC	5 cut(s)	5, 23, 77, 499, 808
HpaII	CCGG	2 cut(s)	825, 1151
HphI	GGTGA	2 cut(s)	32, 380
Hpy166II	GTNNAC	4 cut(s)	316, 718, 901, 1123
Hpy188I	TCNGA	3 cut(s)	159, 768, 807
Hpy188III	TCNNGA	4 cut(s)	169, 338, 561, 622
Hpy8I	GTNNAC	4 cut(s)	316, 718, 901, 1123
HpyAV	CCTTC	3 cut(s)	103, 217, 567
HpyCH4III	ACNGT	3 cut(s)	313, 722, 905
HpyCH4IV	ACGT	4 cut(s)	140, 236, 726, 897
HpyCH4V	TGCA	4 cut(s)	347, 704, 1067, 1118
HpyF10VI	GCNNNNNNNGC	4 cut(s)	193, 389, 398, 410
HpyF3I	CTNAG	3 cut(s)	267, 804, 959
HpySE526I	ACGT	4 cut(s)	140, 236, 726, 897
Hsp92I	GRCGYC	3 cut(s)	236, 413, 726
Hsp92II	CATG	8 cut(s)	126, 299, 704, 823, 853, 946, 1093, 1147
HspAI	GCGC	2 cut(s)	230, 1034
KpnI	GGTACC	2 cut(s)	327, 840
Ksp22I	TGATCA	1 cut(s)	618
Kzo9I	GATC	3 cut(s)	154, 618, 1146
LguI	GCTCTTC	1 cut(s)	411
LmnI	GCTCC	1 cut(s)	479
Lsp1109I	GCAGC	2 cut(s)	376, 388
LweI	GCATC	1 cut(s)	1054
MaeI	CTAG	2 cut(s)	749, 1041
MaeII	ACGT	4 cut(s)	140, 236, 726, 897
MaeIII	GTNAC	2 cut(s)	722, 893
MalI	GATC	3 cut(s)	156, 620, 1148
MboI	GATC	3 cut(s)	154, 618, 1146
MboII	GAAGA	4 cut(s)	364, 398, 1106, 1166
MluCI	AATT	4 cut(s)	547, 711, 771, 997
MlyI	GAGTC	1 cut(s)	32
MmeI	TCCRAC	4 cut(s)	10, 252, 457, 1052
MseI	TTAA	4 cut(s)	504, 648, 689, 1001
MspA1I	CMGCKG	2 cut(s)	187, 389
MspI	CCGG	2 cut(s)	825, 1151
MspR9I	CCNGG	4 cut(s)	217, 594, 826, 1151
MvaI	CCWGG	2 cut(s)	217, 594
MwoI	GCNNNNNNNGC	4 cut(s)	193, 389, 398, 410
NciI	CCSGG	2 cut(s)	826, 1151
NdeI	CATATG	1 cut(s)	304
NdeII	GATC	3 cut(s)	154, 618, 1146
NheI	GCTAGC	1 cut(s)	1040
NlaIII	CATG	8 cut(s)	126, 299, 704, 823, 853, 946, 1093, 1147
NlaIV	GGNNCC	4 cut(s)	88, 325, 838, 855
NmuCI	GTSAC	2 cut(s)	722, 893
NspI	RCATGY	1 cut(s)	946
NspV	TTCGAA	1 cut(s)	497
PaeR7I	CTCGAG	2 cut(s)	792, 1191
PceI	AGGCCT	1 cut(s)	113
PciSI	GCTCTTC	1 cut(s)	411
PfeI	GAWTC	4 cut(s)	5, 77, 499, 808
PfoI	TCCNGGA	1 cut(s)	1149
PkrI	GCNGC	2 cut(s)	391, 403
PleI	GAGTC	1 cut(s)	31
PpsI	GAGTC	1 cut(s)	31
PpuMI	RGGWCCY	1 cut(s)	862
Psp1406I	AACGTT	1 cut(s)	140
Psp5II	RGGWCCY	1 cut(s)	862
Psp6I	CCWGG	2 cut(s)	215, 592
PspFI	CCCAGC	1 cut(s)	174
PspGI	CCWGG	2 cut(s)	215, 592
PspN4I	GGNNCC	4 cut(s)	88, 325, 838, 855
PspPI	GGNCC	4 cut(s)	213, 853, 862, 1196
PspPPI	RGGWCCY	1 cut(s)	862
PspXI	VCTCGAGB	2 cut(s)	792, 1191
PstNI	CAGNNNCTG	1 cut(s)	392
PvuII	CAGCTG	2 cut(s)	187, 389
RsaI	GTAC	5 cut(s)	317, 325, 717, 838, 902
RsaNI	GTAC	5 cut(s)	316, 324, 716, 837, 901
SalI	GTCGAC	1 cut(s)	1121
SapI	GCTCTTC	1 cut(s)	411
SaqAI	TTAA	4 cut(s)	504, 648, 689, 1001
SatI	GCNGC	2 cut(s)	390, 402
Sau3AI	GATC	3 cut(s)	154, 618, 1146
Sau96I	GGNCC	4 cut(s)	213, 853, 862, 1196
SchI	GAGTC	1 cut(s)	32
ScrFI	CCNGG	4 cut(s)	217, 594, 826, 1151
SfaNI	GCATC	1 cut(s)	1054
Sfr274I	CTCGAG	2 cut(s)	792, 1191
SfuI	TTCGAA	1 cut(s)	497
SinI	GGWCC	2 cut(s)	213, 862
SlaI	CTCGAG	2 cut(s)	792, 1191
SmlI	CTYRAG	3 cut(s)	199, 792, 1191
SmoI	CTYRAG	3 cut(s)	199, 792, 1191
Sse9I	AATT	4 cut(s)	547, 711, 771, 997
SseBI	AGGCCT	1 cut(s)	113
SsiI	CCGC	1 cut(s)	152
SspI	AATATT	2 cut(s)	379, 463
SspMI	CTAG	2 cut(s)	749, 1041
StuI	AGGCCT	1 cut(s)	113
StyD4I	CCNGG	4 cut(s)	215, 592, 824, 1149
StyI	CCWWGG	2 cut(s)	114, 841
TaaI	ACNGT	3 cut(s)	313, 722, 905
TaiI	ACGT	4 cut(s)	143, 239, 729, 900
TaqI	TCGA	4 cut(s)	497, 793, 1122, 1192
TasI	AATT	4 cut(s)	547, 711, 771, 997
TatI	WGTACW	3 cut(s)	315, 715, 900
TfiI	GAWTC	4 cut(s)	5, 77, 499, 808
Tru1I	TTAA	4 cut(s)	504, 648, 689, 1001
Tru9I	TTAA	4 cut(s)	504, 648, 689, 1001
TscAI	CASTG	1 cut(s)	354
TseFI	GTSAC	2 cut(s)	722, 893
TseI	GCWGC	2 cut(s)	389, 401
Tsp45I	GTSAC	2 cut(s)	722, 893
TspDTI	ATGAA	1 cut(s)	111
TspRI	CASTG	1 cut(s)	354
VpaK11BI	GGWCC	2 cut(s)	213, 862
XagI	CCTNNNNNAGG	1 cut(s)	516
XapI	RAATTY	1 cut(s)	997
XceI	RCATGY	1 cut(s)	946
XhoI	CTCGAG	2 cut(s)	792, 1191
XmiI	GTMKAC	1 cut(s)	1122
XspI	CTAG	2 cut(s)	749, 1041
ZraI	GACGTC	2 cut(s)	237, 727

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.