Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0003595

Physical Location & Seq

Genomic Coordinates Reverse (-)

32875780 .. 32877690

Gene Structure 1911 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0308900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGGGAGGCAACCATGTTGTGATAAGGTTGGGTTGAAGAAGGGACCTTGGACAGCCGAAGAGGACAAGAAGCTCATTAGCTTCATCCTCACCAATGGCCAATGCTGTTGGAGAGCTGTACCTAAGCTTGCAGGATTGTTAAGGTGTGGAAAAAGCTGCAGGCTGAGATGGACCAACTATCTCAGGCCAGACTTGAAGAGAGGTCTGTTATCTGAACATGAAGAGAAGATGGTCATTGATCTTCATGCCCAACTTGGAAACAGATGGTCTAAGATTGCTTCTCATCTCCCTGGAAGAACTGATAATGAGATCAAAAATCACTGGAATACCCACATCAAGAAGAAGCTGAAAAAAATGGGGATTGATCCTCTCACTCACAAACCACTTCCCAATGGCAATGAGATTGAAAACCAATCCCAACAAAAGCAACATATACAAAATGATCAAGAGCAACAGCAACAAGAAGAACAATCTTGTACAGCTACTGATGACACATTCGAAATTGACCAAGTCAATGAGGGGCCCAAAGTCGAAGACAAAGTTGAATTTGTGACAATGGATCATGATGATCATGAGCTCTTGAATGGGTTCTGCATAGATGAAGTTCCACTTATTGAGCCGCATGAGATTCATCTTGTTCCTAATTGTGCTCCTTCTTCATCAACTTCATCTTCTTCATCTTGTTCAAATTCATCCTCCAACTTTCTCGAAGACTTGCAATATCTACCAGATTTTGGATGGCCAAATTGTGATTACAGCAGCAGCAACAACAACAACAACGACATCATTATCAACAATGACACCATGGGCTTGTGGGATGATGACTTCAGCAGTTGGGGCCAAGAATCCTGGGCATTTGGGGTTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

289

Amino Acids

32.92

Weight (kDa)

5.13

Isoelectric Point (pI)

56.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	7.6e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 75	1.8e-07	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	71 - 111	4.5e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	71 - 118	6.5e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003595)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22750 AT4G14780
fragaria_vesca	FvH4_2g23120 FvH4_2g23120 FvH4_4g00810 FvH4_4g00810 FvH4_4g00810
malus_domestica	MD03G1260300.v1.1 MD11G1280600.v1.1 MD13G1197700.v1.1 MD16G1197600.v1.1
prunus_persica	Prupe.1G019000_v2.0.a1 Prupe.8G236500_v2.0.a1
pyrus_communis	pycom11g24840 pycom13g17120 pycom16g16650
rosa_chinensis	RchiOBHm_Chr4g0387361 RchiOBHm_Chr6g0290371
rosa_laevigata	RLG00000010127 RLG00000012225
rosa_multiflora	Rmu_sc0000013.1_g000027 Rmu_ssc0000094.1_g000001
rosa_roxburghii	Rroxscaffold_5G00334090 Rroxscaffold_7G00177130
rosa_rugosa	Rorug03G0308900 Rorug06G0212000
rosa_samantha	Rh4BG010400 Rh4DG011300 Rh4DG011700 Rh6AG322300 Rh6BG329700 Rh6CG335700
rosa_wichuraiana	Rw4G000960 Rw6G027830 Rw6G027930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	734
AciI	CCGC	1 cut(s)	620
AclWI	GGATC	2 cut(s)	359, 567
AcoI	YGGCCR	2 cut(s)	97, 740
AcsI	RAATTY	2 cut(s)	545, 688
AcuI	CTGAAG	1 cut(s)	811
AfaI	GTAC	2 cut(s)	120, 478
AfiI	CCNNNNNNNGG	1 cut(s)	734
AgsI	TTSAA	6 cut(s)	37, 196, 407, 545, 583, 687
AjnI	CCWGG	2 cut(s)	289, 848
AluBI	AGCT	8 cut(s)	73, 81, 116, 127, 156, 346, 482, 577
AluI	AGCT	8 cut(s)	73, 81, 116, 127, 156, 346, 482, 577
Alw21I	GWGCWC	2 cut(s)	579, 652
AlwI	GGATC	2 cut(s)	359, 567
AlwNI	CAGNNNCTG	1 cut(s)	485
AoxI	GGCC	5 cut(s)	97, 185, 521, 740, 838
ApaI	GGGCCC	1 cut(s)	525
ApeKI	GCWGC	3 cut(s)	156, 759, 762
ApoI	RAATTY	2 cut(s)	545, 688
Asp700I	GAANNNNTTC	1 cut(s)	587
AspS9I	GGNCC	5 cut(s)	44, 171, 521, 522, 838
AsuHPI	GGTGA	1 cut(s)	82
AsuII	TTCGAA	1 cut(s)	498
AvaII	GGWCC	2 cut(s)	44, 171
BaeGI	GKGCMC	1 cut(s)	525
BalI	TGGCCA	2 cut(s)	99, 742
BanII	GRGCYC	2 cut(s)	525, 579
BbsI	GAAGAC	2 cut(s)	540, 717
Bbv12I	GWGCWC	2 cut(s)	579, 652
BbvI	GCAGC	3 cut(s)	143, 771, 774
BccI	CCATC	4 cut(s)	162, 223, 258, 732
BciT130I	CCWGG	2 cut(s)	291, 850
BclI	TGATCA	2 cut(s)	442, 568
BfmI	CTRYAG	1 cut(s)	157
BisI	GCNGC	4 cut(s)	157, 620, 760, 763
BlsI	GCNGC	4 cut(s)	158, 621, 761, 764
Bme1390I	CCNGG	2 cut(s)	291, 850
Bme18I	GGWCC	2 cut(s)	44, 171
BmgT120I	GGNCC	5 cut(s)	44, 171, 521, 522, 838
BmiI	GGNNCC	4 cut(s)	45, 522, 523, 839
BmrFI	CCNGG	2 cut(s)	291, 850
BpiI	GAAGAC	2 cut(s)	540, 717
Bpu10I	CCTNAGC	1 cut(s)	123
Bpu14I	TTCGAA	1 cut(s)	498
BsaJI	CCNNGG	4 cut(s)	47, 289, 804, 849
Bsc4I	CCNNNNNNNGG	1 cut(s)	734
Bse1I	ACTGG	1 cut(s)	326
Bse3DI	GCAATG	1 cut(s)	403
BseBI	CCWGG	2 cut(s)	291, 850
BseDI	CCNNGG	4 cut(s)	47, 289, 804, 849
BseGI	GGATG	4 cut(s)	84, 692, 743, 823
BseLI	CCNNNNNNNGG	1 cut(s)	734
BseMI	GCAATG	1 cut(s)	403
BseMII	CTCAG	2 cut(s)	155, 196
BseNI	ACTGG	1 cut(s)	326
BseSI	GKGCMC	1 cut(s)	525
BseXI	GCAGC	3 cut(s)	143, 771, 774
BshFI	GGCC	5 cut(s)	99, 187, 523, 742, 840
BsiHKAI	GWGCWC	2 cut(s)	579, 652
BslFI	GGGAC	1 cut(s)	57
BslI	CCNNNNNNNGG	1 cut(s)	734
BsmFI	GGGAC	1 cut(s)	57
BsnI	GGCC	5 cut(s)	99, 187, 523, 742, 840
Bsp119I	TTCGAA	1 cut(s)	498
Bsp120I	GGGCCC	1 cut(s)	521
Bsp1286I	GDGCHC	3 cut(s)	525, 579, 652
Bsp1407I	TGTACA	1 cut(s)	476
Bsp143I	GATC	6 cut(s)	238, 309, 364, 442, 559, 568
Bsp19I	CCATGG	1 cut(s)	804
BspACI	CCGC	1 cut(s)	620
BspANI	GGCC	5 cut(s)	99, 187, 523, 742, 840
BspCNI	CTCAG	2 cut(s)	156, 195
BspHI	TCATGA	2 cut(s)	562, 571
BspLI	GGNNCC	4 cut(s)	45, 522, 523, 839
BspMAI	CTGCAG	1 cut(s)	161
BspPI	GGATC	2 cut(s)	359, 567
BspT104I	TTCGAA	1 cut(s)	498
BsrDI	GCAATG	1 cut(s)	403
BsrGI	TGTACA	1 cut(s)	476
BsrI	ACTGG	1 cut(s)	326
BssECI	CCNNGG	4 cut(s)	47, 289, 804, 849
BssMI	GATC	6 cut(s)	238, 309, 364, 442, 559, 568
BssT1I	CCWWGG	2 cut(s)	47, 804
Bst2UI	CCWGG	2 cut(s)	291, 850
Bst6I	CTCTTC	3 cut(s)	54, 191, 216
BstAUI	TGTACA	1 cut(s)	476
BstBI	TTCGAA	1 cut(s)	498
BstC8I	GCNNGC	2 cut(s)	129, 161
BstDEI	CTNAG	4 cut(s)	123, 164, 182, 270
BstDSI	CCRYGG	1 cut(s)	804
BstF5I	GGATG	4 cut(s)	84, 692, 743, 823
BstKTI	GATC	6 cut(s)	241, 312, 367, 445, 562, 571
BstMBI	GATC	6 cut(s)	238, 309, 364, 442, 559, 568
BstMWI	GCNNNNNNNGC	1 cut(s)	837
BstNI	CCWGG	2 cut(s)	291, 850
BstSCI	CCNGG	2 cut(s)	289, 848
BstSFI	CTRYAG	1 cut(s)	157
BstSLI	GKGCMC	1 cut(s)	525
BstV1I	GCAGC	3 cut(s)	143, 771, 774
BstV2I	GAAGAC	2 cut(s)	540, 717
BsuRI	GGCC	5 cut(s)	99, 187, 523, 742, 840
BtgI	CCRYGG	1 cut(s)	804
BtsCI	GGATG	4 cut(s)	84, 692, 743, 823
BtsIMutI	CAGTG	1 cut(s)	319
Cac8I	GCNNGC	2 cut(s)	129, 161
CaiI	CAGNNNCTG	1 cut(s)	485
CciI	TCATGA	2 cut(s)	562, 571
Cfr13I	GGNCC	5 cut(s)	44, 171, 521, 522, 838
Csp6I	GTAC	2 cut(s)	119, 477
CviAII	CATG	7 cut(s)	15, 218, 245, 563, 572, 623, 805
CviQI	GTAC	2 cut(s)	119, 477
DdeI	CTNAG	4 cut(s)	123, 164, 182, 270
DpnI	GATC	6 cut(s)	240, 311, 366, 444, 561, 570
DpnII	GATC	6 cut(s)	238, 309, 364, 442, 559, 568
EaeI	YGGCCR	2 cut(s)	97, 740
Eam1104I	CTCTTC	3 cut(s)	54, 191, 216
EarI	CTCTTC	3 cut(s)	54, 191, 216
Ecl136II	GAGCTC	1 cut(s)	577
Eco130I	CCWWGG	2 cut(s)	47, 804
Eco24I	GRGCYC	2 cut(s)	525, 579
Eco47I	GGWCC	2 cut(s)	44, 171
Eco53kI	GAGCTC	1 cut(s)	577
Eco57I	CTGAAG	1 cut(s)	811
EcoICRI	GAGCTC	1 cut(s)	577
EcoO109I	RGGNCCY	2 cut(s)	44, 521
EcoRII	CCWGG	2 cut(s)	289, 848
EcoT14I	CCWWGG	2 cut(s)	47, 804
EcoT38I	GRGCYC	2 cut(s)	525, 579
ErhI	CCWWGG	2 cut(s)	47, 804
FaeI	CATG	7 cut(s)	18, 221, 248, 566, 575, 626, 808
FalI	AAGNNNNNCTT	2 cut(s)	594, 626
FaqI	GGGAC	1 cut(s)	57
FatI	CATG	7 cut(s)	14, 217, 244, 562, 571, 622, 804
FbaI	TGATCA	2 cut(s)	442, 568
Fnu4HI	GCNGC	4 cut(s)	157, 620, 760, 763
FokI	GGATG	4 cut(s)	71, 679, 750, 830
FriOI	GRGCYC	2 cut(s)	525, 579
Fsp4HI	GCNGC	4 cut(s)	157, 620, 760, 763
GluI	GCNGC	4 cut(s)	157, 620, 760, 763
HaeIII	GGCC	5 cut(s)	99, 187, 523, 742, 840
Hin1II	CATG	7 cut(s)	18, 221, 248, 566, 575, 626, 808
HindIII	AAGCTT	1 cut(s)	125
HinfI	GANTC	2 cut(s)	628, 845
HphI	GGTGA	1 cut(s)	82
Hpy188I	TCNGA	1 cut(s)	214
Hpy188III	TCNNGA	6 cut(s)	337, 446, 563, 572, 580, 707
HpyAV	CCTTC	2 cut(s)	34, 663
HpyCH4V	TGCA	4 cut(s)	131, 159, 594, 718
HpyF10VI	GCNNNNNNNGC	1 cut(s)	837
HpyF3I	CTNAG	4 cut(s)	123, 164, 182, 270
Hsp92II	CATG	7 cut(s)	18, 221, 248, 566, 575, 626, 808
Ksp22I	TGATCA	2 cut(s)	442, 568
Kzo9I	GATC	6 cut(s)	238, 309, 364, 442, 559, 568
LmnI	GCTCC	1 cut(s)	655
Lsp1109I	GCAGC	3 cut(s)	143, 771, 774
MaeIII	GTNAC	1 cut(s)	550
MalI	GATC	6 cut(s)	240, 311, 366, 444, 561, 570
MboI	GATC	6 cut(s)	238, 309, 364, 442, 559, 568
MhlI	GDGCHC	3 cut(s)	525, 579, 652
MlsI	TGGCCA	2 cut(s)	99, 742
MluCI	AATT	5 cut(s)	501, 545, 643, 688, 745
MluNI	TGGCCA	2 cut(s)	99, 742
MmeI	TCCRAC	2 cut(s)	89, 723
MnlI	CCTC	6 cut(s)	55, 98, 194, 378, 511, 706
Mox20I	TGGCCA	2 cut(s)	99, 742
MroXI	GAANNNNTTC	1 cut(s)	587
MscI	TGGCCA	2 cut(s)	99, 742
MseI	TTAA	1 cut(s)	140
Msp20I	TGGCCA	2 cut(s)	99, 742
MspR9I	CCNGG	2 cut(s)	291, 850
MvaI	CCWGG	2 cut(s)	291, 850
MwoI	GCNNNNNNNGC	1 cut(s)	837
NcoI	CCATGG	1 cut(s)	804
NdeII	GATC	6 cut(s)	238, 309, 364, 442, 559, 568
NlaIII	CATG	7 cut(s)	18, 221, 248, 566, 575, 626, 808
NlaIV	GGNNCC	4 cut(s)	45, 522, 523, 839
NmuCI	GTSAC	1 cut(s)	550
NspV	TTCGAA	1 cut(s)	498
PagI	TCATGA	2 cut(s)	562, 571
PdmI	GAANNNNTTC	1 cut(s)	587
PfeI	GAWTC	2 cut(s)	628, 845
PflFI	GACNNNGTC	1 cut(s)	509
PflMI	CCANNNNNTGG	1 cut(s)	734
PkrI	GCNGC	4 cut(s)	158, 621, 761, 764
PpuMI	RGGWCCY	1 cut(s)	44
Psp124BI	GAGCTC	1 cut(s)	579
Psp5II	RGGWCCY	1 cut(s)	44
Psp6I	CCWGG	2 cut(s)	289, 848
PspGI	CCWGG	2 cut(s)	289, 848
PspN4I	GGNNCC	4 cut(s)	45, 522, 523, 839
PspOMI	GGGCCC	1 cut(s)	521
PspPI	GGNCC	5 cut(s)	44, 171, 521, 522, 838
PspPPI	RGGWCCY	1 cut(s)	44
PstI	CTGCAG	1 cut(s)	161
PstNI	CAGNNNCTG	1 cut(s)	485
PsyI	GACNNNGTC	1 cut(s)	509
RsaI	GTAC	2 cut(s)	120, 478
RsaNI	GTAC	2 cut(s)	119, 477
SacI	GAGCTC	1 cut(s)	579
SaqAI	TTAA	1 cut(s)	140
SatI	GCNGC	4 cut(s)	157, 620, 760, 763
Sau3AI	GATC	6 cut(s)	238, 309, 364, 442, 559, 568
Sau96I	GGNCC	5 cut(s)	44, 171, 521, 522, 838
ScrFI	CCNGG	2 cut(s)	291, 850
SduI	GDGCHC	3 cut(s)	525, 579, 652
SfcI	CTRYAG	1 cut(s)	157
SfuI	TTCGAA	1 cut(s)	498
SinI	GGWCC	2 cut(s)	44, 171
Sse9I	AATT	5 cut(s)	501, 545, 643, 688, 745
SsiI	CCGC	1 cut(s)	620
SstI	GAGCTC	1 cut(s)	579
StyD4I	CCNGG	2 cut(s)	289, 848
StyI	CCWWGG	2 cut(s)	47, 804
TaqI	TCGA	3 cut(s)	498, 531, 708
TasI	AATT	5 cut(s)	501, 545, 643, 688, 745
TatI	WGTACW	1 cut(s)	476
TauI	GCSGC	1 cut(s)	622
TfiI	GAWTC	2 cut(s)	628, 845
Tru1I	TTAA	1 cut(s)	140
Tru9I	TTAA	1 cut(s)	140
TscAI	CASTG	1 cut(s)	326
TseFI	GTSAC	1 cut(s)	550
TseI	GCWGC	3 cut(s)	156, 759, 762
Tsp45I	GTSAC	1 cut(s)	550
TspDTI	ATGAA	9 cut(s)	73, 233, 234, 615, 620, 648, 657, 666, 681
TspRI	CASTG	1 cut(s)	326
Tth111I	GACNNNGTC	1 cut(s)	509
Van91I	CCANNNNNTGG	1 cut(s)	734
VpaK11BI	GGWCC	2 cut(s)	44, 171
XapI	RAATTY	2 cut(s)	545, 688
XcmI	CCANNNNNNNNNTGG	1 cut(s)	735
XmnI	GAANNNNTTC	1 cut(s)	587

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.