Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000013.1

Orthogroup ID

OG0003595

Physical Location & Seq

Genomic Coordinates Reverse (-)

113492 .. 119263

Gene Structure 5772 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000013.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1377 bp

atgtcggaaatggatccaatgacaagtgacaatattgaggaggtcaatgtagaaaagaagatggatcacctcgaaggcggtgaaaattcaaaaatcaagggtactggaagtgttagtaacaaagaaatgattttcagagcagataaaattgatttgaaaaacttagatatacagcttgagaagcatttgagcagggtttggtccaaaattgaggacaaaaggcctaaagaagagtgggagattgatttagctaaattggatataagatatgttgtagctcaagggacctatggtactgtatacaggggtatttatgatgaacaagatgttgcagtgaagctgttagactggggggaggatggttatgccacagccgctgaaactgctgctctgcgggcatcatttcaaaaagaagttgctgtttggcacaagcttgaccatcctaatgttacaaggttcattggagcttcaatgggaacttctaatcttaagattccttcaaaaaactcttcaagcgatgatccaaattctcatcctgctagagcatgttgtgttgttgtggagtttcttgctggtgggacactaaaacaatatttgataaaaaacagaaaaaagaaacttgccttgaaggttgtgatccaacttgctttggacctctcaagaggtcttagctatctgcattccaagaaaattgtgcaccgtgatgtcaaaacagaaaatatgttgctggatatcgatagaaacttaaaaatagctgattttggtgttgctcgcgttgaagctcaaaatccaagggacatgacaggtgaaaccggcaccttaggatacatggctccagaggttctggatggtaagccatataatagaaggtgcgatgtctacagttttggcatatgcttatgggaaatgtactgctgcgatatgccttaccctgaccttagctttgctgatgtatcatctgctgttgttcgacagaacttacgaccagaaattccgagatgttgtcctagttctttggctagtgtcatgcggaagtgctgggatggaaatgcaaataaacgacctgaaatggatgaggtggtgagaatgttggaagcaattgatacaagcaaaggaggtggaatgatacctgaagacaaaaatccgggctgtttctgttttgcccctgctcgcggtctcttgatgggagctttatcagagaactttgttagtgcagtctctccgttggccacagaacggtttgccatcaaggctggactaaagtttgctagagaaactgcgttactacctgtggtaactgaaacagattctttggaagcgacagagtttgttgggctgcttttggttatattgtggaggaaatcaaagagcttatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

458

Amino Acids

51.11

Weight (kDa)

6.25

Isoelectric Point (pI)

33.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003595)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22750 AT4G14780
fragaria_vesca	FvH4_2g23120 FvH4_2g23120 FvH4_4g00810 FvH4_4g00810 FvH4_4g00810
malus_domestica	MD03G1260300.v1.1 MD11G1280600.v1.1 MD13G1197700.v1.1 MD16G1197600.v1.1
prunus_persica	Prupe.1G019000_v2.0.a1 Prupe.8G236500_v2.0.a1
pyrus_communis	pycom11g24840 pycom13g17120 pycom16g16650
rosa_chinensis	RchiOBHm_Chr4g0387361 RchiOBHm_Chr6g0290371
rosa_laevigata	RLG00000010127 RLG00000012225
rosa_multiflora	Rmu_sc0000013.1_g000027 Rmu_ssc0000094.1_g000001
rosa_roxburghii	Rroxscaffold_5G00334090 Rroxscaffold_7G00177130
rosa_rugosa	Rorug03G0308900 Rorug06G0212000
rosa_samantha	Rh4BG010400 Rh4DG011300 Rh4DG011700 Rh6AG322300 Rh6BG329700 Rh6CG335700
rosa_wichuraiana	Rw4G000960 Rw6G027830 Rw6G027930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	815
AccI	GTMKAC	2 cut(s)	300, 879
AccII	CGCG	2 cut(s)	774, 1173
AciI	CCGC	5 cut(s)	78, 375, 394, 1030, 1173
AclWI	GGATC	5 cut(s)	8, 21, 72, 515, 631
AcoI	YGGCCR	1 cut(s)	1227
AcsI	RAATTY	3 cut(s)	85, 526, 990
AcuI	CTGAAG	1 cut(s)	1152
AfaI	GTAC	3 cut(s)	103, 295, 911
AfiI	CCNNNNNNNGG	2 cut(s)	1172, 1236
AflII	CTTAAG	1 cut(s)	488
AgsI	TTSAA	8 cut(s)	90, 157, 407, 471, 501, 513, 628, 779
Alw21I	GWGCWC	1 cut(s)	699
Alw26I	GTCTC	2 cut(s)	1181, 1222
Alw44I	GTGCAC	1 cut(s)	695
AlwI	GGATC	5 cut(s)	8, 21, 72, 515, 631
AlwNI	CAGNNNCTG	1 cut(s)	377
AoxI	GGCC	2 cut(s)	221, 1227
ApaLI	GTGCAC	1 cut(s)	695
ApeKI	GCWGC	3 cut(s)	386, 915, 1336
ApoI	RAATTY	3 cut(s)	85, 526, 990
ArsI	GACNNNNNNTTYG	2 cut(s)	926, 958
AspS9I	GGNCC	3 cut(s)	201, 285, 652
AsuC2I	CCSGG	1 cut(s)	1146
AsuHPI	GGTGA	4 cut(s)	59, 92, 818, 1093
AvaII	GGWCC	3 cut(s)	201, 285, 652
AxyI	CCTNAGG	1 cut(s)	820
BaeGI	GKGCMC	1 cut(s)	699
BalI	TGGCCA	1 cut(s)	1229
BamHI	GGATCC	1 cut(s)	13
BanI	GGYRCC	1 cut(s)	815
BbsI	GAAGAC	1 cut(s)	1140
Bbv12I	GWGCWC	1 cut(s)	699
BbvI	GCAGC	3 cut(s)	373, 902, 1323
BccI	CCATC	7 cut(s)	55, 353, 447, 842, 1037, 1177, 1253
BciVI	GTATCC	1 cut(s)	818
BcnI	CCSGG	1 cut(s)	1146
BcoDI	GTCTC	2 cut(s)	1181, 1222
BfaI	CTAG	4 cut(s)	540, 1008, 1020, 1269
BfmI	CTRYAG	1 cut(s)	880
BfrI	CTTAAG	1 cut(s)	488
BfuI	GTATCC	1 cut(s)	818
BglI	GCCNNNNNGGC	1 cut(s)	1250
BisI	GCNGC	4 cut(s)	375, 387, 916, 1337
BlsI	GCNGC	4 cut(s)	376, 388, 917, 1338
Bme1390I	CCNGG	1 cut(s)	1146
Bme18I	GGWCC	3 cut(s)	201, 285, 652
BmgT120I	GGNCC	3 cut(s)	201, 285, 652
BmiI	GGNNCC	4 cut(s)	15, 286, 817, 834
BmrFI	CCNGG	1 cut(s)	1146
BmrI	ACTGGG	1 cut(s)	358
BmsI	GCATC	1 cut(s)	407
BmuI	ACTGGG	1 cut(s)	358
BpiI	GAAGAC	1 cut(s)	1140
BpmI	CTGGAG	1 cut(s)	819
Bpu10I	CCTNAGC	1 cut(s)	938
BpuEI	CTTGAG	3 cut(s)	197, 264, 643
BpuMI	CCSGG	1 cut(s)	1146
Bsa29I	ATCGAT	1 cut(s)	735
BsaI	GGTCTC	1 cut(s)	1181
BsaJI	CCNNGG	1 cut(s)	791
Bsc4I	CCNNNNNNNGG	2 cut(s)	1172, 1236
Bse118I	RCCGGY	1 cut(s)	812
Bse1I	ACTGG	2 cut(s)	109, 353
Bse21I	CCTNAGG	1 cut(s)	820
BseCI	ATCGAT	1 cut(s)	735
BseDI	CCNNGG	1 cut(s)	791
BseGI	GGATG	6 cut(s)	364, 439, 532, 853, 1048, 1078
BseLI	CCNNNNNNNGG	2 cut(s)	1172, 1236
BseNI	ACTGG	2 cut(s)	109, 353
BseRI	GAGGAG	1 cut(s)	53
BseSI	GKGCMC	1 cut(s)	699
BseXI	GCAGC	3 cut(s)	373, 902, 1323
BseYI	CCCAGC	1 cut(s)	1038
BsgI	GTGCAG	1 cut(s)	1233
Bsh1236I	CGCG	2 cut(s)	774, 1173
BshFI	GGCC	2 cut(s)	223, 1229
BshNI	GGYRCC	1 cut(s)	815
BshVI	ATCGAT	1 cut(s)	735
BsiHKAI	GWGCWC	1 cut(s)	699
BsiSI	CCGG	2 cut(s)	813, 1145
BslFI	GGGAC	3 cut(s)	298, 592, 809
BslI	CCNNNNNNNGG	2 cut(s)	1172, 1236
BsmAI	GTCTC	2 cut(s)	1181, 1222
BsmFI	GGGAC	3 cut(s)	298, 592, 809
BsmI	GAATGC	1 cut(s)	679
BsnI	GGCC	2 cut(s)	223, 1229
Bso31I	GGTCTC	1 cut(s)	1181
Bsp1286I	GDGCHC	1 cut(s)	699
Bsp143I	GATC	4 cut(s)	13, 64, 520, 636
BspACI	CCGC	5 cut(s)	78, 375, 394, 1030, 1173
BspANI	GGCC	2 cut(s)	223, 1229
BspDI	ATCGAT	1 cut(s)	735
BspFNI	CGCG	2 cut(s)	774, 1173
BspLI	GGNNCC	4 cut(s)	15, 286, 817, 834
BspPI	GGATC	5 cut(s)	8, 21, 72, 515, 631
BspT107I	GGYRCC	1 cut(s)	815
BspTI	CTTAAG	1 cut(s)	488
BspTNI	GGTCTC	1 cut(s)	1181
BsrFI	RCCGGY	1 cut(s)	812
BsrI	ACTGG	2 cut(s)	109, 353
BssAI	RCCGGY	1 cut(s)	812
BssECI	CCNNGG	1 cut(s)	791
BssMI	GATC	4 cut(s)	13, 64, 520, 636
BssNAI	GTATAC	1 cut(s)	301
BssT1I	CCWWGG	1 cut(s)	791
Bst1107I	GTATAC	1 cut(s)	301
Bst4CI	ACNGT	4 cut(s)	298, 701, 884, 1239
Bst6I	CTCTTC	2 cut(s)	225, 514
BstAFI	CTTAAG	1 cut(s)	488
BstC8I	GCNNGC	3 cut(s)	396, 772, 1171
BstDEI	CTNAG	4 cut(s)	163, 668, 820, 938
BstF5I	GGATG	6 cut(s)	364, 439, 532, 853, 1048, 1078
BstFNI	CGCG	2 cut(s)	774, 1173
BstKTI	GATC	4 cut(s)	16, 67, 523, 639
BstMAI	GTCTC	2 cut(s)	1181, 1222
BstMBI	GATC	4 cut(s)	13, 64, 520, 636
BstMWI	GCNNNNNNNGC	5 cut(s)	181, 374, 383, 395, 1250
BstNSI	RCATGY	1 cut(s)	549
BstSCI	CCNGG	1 cut(s)	1144
BstSFI	CTRYAG	1 cut(s)	880
BstSLI	GKGCMC	1 cut(s)	699
BstUI	CGCG	2 cut(s)	774, 1173
BstV1I	GCAGC	3 cut(s)	373, 902, 1323
BstV2I	GAAGAC	1 cut(s)	1140
BstX2I	RGATCY	1 cut(s)	13
BstYI	RGATCY	1 cut(s)	13
BstZ17I	GTATAC	1 cut(s)	301
Bsu15I	ATCGAT	1 cut(s)	735
Bsu36I	CCTNAGG	1 cut(s)	820
BsuI	GTATCC	1 cut(s)	818
BsuRI	GGCC	2 cut(s)	223, 1229
BsuTUI	ATCGAT	1 cut(s)	735
BtgZI	GCGATG	2 cut(s)	531, 888
BtsCI	GGATG	6 cut(s)	364, 439, 532, 853, 1048, 1078
BtsI	GCAGTG	1 cut(s)	339
BtsIMutI	CAGTG	1 cut(s)	339
Cac8I	GCNNGC	3 cut(s)	396, 772, 1171
CaiI	CAGNNNCTG	1 cut(s)	377
Cfr10I	RCCGGY	1 cut(s)	812
Cfr13I	GGNCC	3 cut(s)	201, 285, 652
ClaI	ATCGAT	1 cut(s)	735
Csp6I	GTAC	3 cut(s)	102, 294, 910
CspCI	CAANNNNNGTGG	2 cut(s)	1099, 1134
CviAII	CATG	4 cut(s)	546, 799, 829, 1027
CviQI	GTAC	3 cut(s)	102, 294, 910
DdeI	CTNAG	4 cut(s)	163, 668, 820, 938
DpnI	GATC	4 cut(s)	15, 66, 522, 638
DpnII	GATC	4 cut(s)	13, 64, 520, 636
EaeI	YGGCCR	1 cut(s)	1227
Eam1104I	CTCTTC	2 cut(s)	225, 514
EarI	CTCTTC	2 cut(s)	225, 514
Eco130I	CCWWGG	1 cut(s)	791
Eco147I	AGGCCT	1 cut(s)	223
Eco31I	GGTCTC	1 cut(s)	1181
Eco32I	GATATC	1 cut(s)	733
Eco47I	GGWCC	3 cut(s)	201, 285, 652
Eco57I	CTGAAG	1 cut(s)	1152
Eco81I	CCTNAGG	1 cut(s)	820
EcoO109I	RGGNCCY	1 cut(s)	285
EcoRV	GATATC	1 cut(s)	733
EcoT14I	CCWWGG	1 cut(s)	791
ErhI	CCWWGG	1 cut(s)	791
FaeI	CATG	4 cut(s)	549, 802, 832, 1030
FaqI	GGGAC	3 cut(s)	298, 592, 809
FatI	CATG	4 cut(s)	545, 798, 828, 1026
FauI	CCCGC	1 cut(s)	387
FauNDI	CATATG	1 cut(s)	893
FblI	GTMKAC	2 cut(s)	300, 879
Fnu4HI	GCNGC	4 cut(s)	375, 387, 916, 1337
FokI	GGATG	6 cut(s)	371, 426, 519, 860, 1055, 1085
Fsp4HI	GCNGC	4 cut(s)	375, 387, 916, 1337
FspBI	CTAG	4 cut(s)	540, 1008, 1020, 1269
GluI	GCNGC	4 cut(s)	375, 387, 916, 1337
GsaI	CCCAGC	1 cut(s)	1042
GsuI	CTGGAG	1 cut(s)	819
HaeIII	GGCC	2 cut(s)	223, 1229
HapII	CCGG	2 cut(s)	813, 1145
Hin1II	CATG	4 cut(s)	549, 802, 832, 1030
HindIII	AAGCTT	1 cut(s)	431
HinfI	GANTC	2 cut(s)	493, 1307
HpaII	CCGG	2 cut(s)	813, 1145
HphI	GGTGA	4 cut(s)	59, 92, 818, 1093
Hpy166II	GTNNAC	3 cut(s)	301, 697, 880
Hpy188I	TCNGA	4 cut(s)	7, 137, 996, 1198
Hpy188III	TCNNGA	4 cut(s)	660, 836, 845, 1180
Hpy8I	GTNNAC	3 cut(s)	301, 697, 880
HpyAV	CCTTC	4 cut(s)	68, 507, 622, 861
HpyCH4III	ACNGT	4 cut(s)	298, 701, 884, 1239
HpyCH4V	TGCA	5 cut(s)	332, 679, 697, 1052, 1214
HpyF10VI	GCNNNNNNNGC	5 cut(s)	181, 374, 383, 395, 1250
HpyF3I	CTNAG	4 cut(s)	163, 668, 820, 938
Hsp92II	CATG	4 cut(s)	549, 802, 832, 1030
Kzo9I	GATC	4 cut(s)	13, 64, 520, 636
LmnI	GCTCC	3 cut(s)	464, 838, 1187
Lsp1109I	GCAGC	3 cut(s)	373, 902, 1323
LweI	GCATC	1 cut(s)	407
MaeI	CTAG	4 cut(s)	540, 1008, 1020, 1269
MaeIII	GTNAC	5 cut(s)	26, 116, 448, 1281, 1294
MalI	GATC	4 cut(s)	15, 66, 522, 638
MboI	GATC	4 cut(s)	13, 64, 520, 636
MboII	GAAGA	4 cut(s)	70, 242, 501, 1145
MfeI	CAATTG	1 cut(s)	1098
MflI	RGATCY	1 cut(s)	13
MhlI	GDGCHC	1 cut(s)	699
MlsI	TGGCCA	1 cut(s)	1229
MluCI	AATT	8 cut(s)	85, 147, 207, 254, 526, 690, 990, 1098
MluNI	TGGCCA	1 cut(s)	1229
MmeI	TCCRAC	2 cut(s)	664, 1071
Mox20I	TGGCCA	1 cut(s)	1229
MscI	TGGCCA	1 cut(s)	1229
MseI	TTAA	2 cut(s)	489, 746
MslI	CAYNNNNRTG	2 cut(s)	444, 702
Msp20I	TGGCCA	1 cut(s)	1229
MspA1I	CMGCKG	1 cut(s)	377
MspCI	CTTAAG	1 cut(s)	488
MspI	CCGG	2 cut(s)	813, 1145
MspR9I	CCNGG	1 cut(s)	1146
MunI	CAATTG	1 cut(s)	1098
Mva1269I	GAATGC	1 cut(s)	679
MvnI	CGCG	2 cut(s)	774, 1173
MwoI	GCNNNNNNNGC	5 cut(s)	181, 374, 383, 395, 1250
NciI	CCSGG	1 cut(s)	1146
NdeI	CATATG	1 cut(s)	893
NdeII	GATC	4 cut(s)	13, 64, 520, 636
NlaIII	CATG	4 cut(s)	549, 802, 832, 1030
NlaIV	GGNNCC	4 cut(s)	15, 286, 817, 834
NmuCI	GTSAC	1 cut(s)	26
NspI	RCATGY	1 cut(s)	549
PceI	AGGCCT	1 cut(s)	223
PctI	GAATGC	1 cut(s)	679
PfeI	GAWTC	2 cut(s)	493, 1307
PkrI	GCNGC	4 cut(s)	376, 388, 917, 1338
PpuMI	RGGWCCY	1 cut(s)	285
Psp5II	RGGWCCY	1 cut(s)	285
PspFI	CCCAGC	1 cut(s)	1038
PspN4I	GGNNCC	4 cut(s)	15, 286, 817, 834
PspPI	GGNCC	3 cut(s)	201, 285, 652
PspPPI	RGGWCCY	1 cut(s)	285
PstNI	CAGNNNCTG	1 cut(s)	377
PsuI	RGATCY	1 cut(s)	13
RsaI	GTAC	3 cut(s)	103, 295, 911
RsaNI	GTAC	3 cut(s)	102, 294, 910
RseI	CAYNNNNRTG	2 cut(s)	444, 702
SaqAI	TTAA	2 cut(s)	489, 746
SatI	GCNGC	4 cut(s)	375, 387, 916, 1337
Sau3AI	GATC	4 cut(s)	13, 64, 520, 636
Sau96I	GGNCC	3 cut(s)	201, 285, 652
ScrFI	CCNGG	1 cut(s)	1146
SduI	GDGCHC	1 cut(s)	699
SfaNI	GCATC	1 cut(s)	407
SfcI	CTRYAG	1 cut(s)	880
SinI	GGWCC	3 cut(s)	201, 285, 652
SmiMI	CAYNNNNRTG	2 cut(s)	444, 702
SmlI	CTYRAG	4 cut(s)	176, 279, 488, 658
SmoI	CTYRAG	4 cut(s)	176, 279, 488, 658
Sse9I	AATT	8 cut(s)	85, 147, 207, 254, 526, 690, 990, 1098
SseBI	AGGCCT	1 cut(s)	223
SsiI	CCGC	5 cut(s)	78, 375, 394, 1030, 1173
SspI	AATATT	2 cut(s)	34, 593
SspMI	CTAG	4 cut(s)	540, 1008, 1020, 1269
StuI	AGGCCT	1 cut(s)	223
StyD4I	CCNGG	1 cut(s)	1144
StyI	CCWWGG	1 cut(s)	791
TaaI	ACNGT	4 cut(s)	298, 701, 884, 1239
TaqI	TCGA	3 cut(s)	72, 735, 970
TasI	AATT	8 cut(s)	85, 147, 207, 254, 526, 690, 990, 1098
TatI	WGTACW	1 cut(s)	909
TauI	GCSGC	1 cut(s)	377
TfiI	GAWTC	2 cut(s)	493, 1307
Tru1I	TTAA	2 cut(s)	489, 746
Tru9I	TTAA	2 cut(s)	489, 746
TscAI	CASTG	1 cut(s)	339
TseFI	GTSAC	1 cut(s)	26
TseI	GCWGC	3 cut(s)	386, 915, 1336
Tsp45I	GTSAC	1 cut(s)	26
TspDTI	ATGAA	2 cut(s)	333, 448
TspGWI	ACGGA	1 cut(s)	1212
TspRI	CASTG	1 cut(s)	339
Vha464I	CTTAAG	1 cut(s)	488
VneI	GTGCAC	1 cut(s)	695
VpaK11BI	GGWCC	3 cut(s)	201, 285, 652
XapI	RAATTY	3 cut(s)	85, 526, 990
XceI	RCATGY	1 cut(s)	549
XmiI	GTMKAC	2 cut(s)	300, 879
XspI	CTAG	4 cut(s)	540, 1008, 1020, 1269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.