Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0003595

Physical Location & Seq

Genomic Coordinates Reverse (-)

1889162 .. 1894110

Gene Structure 4949 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G000960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGGATCCAATGACAAGTGACAATATTGAGGAGGTCAATGTAGAAAAGAAGATGGATCACCTCGAAGGCGGTGAAAATTCAAAAATCAAGGGTACTGGAAGTGTTAGTAACAAAGAAATGATTTTCAGAGCAGATAAAATTGATTTGAAAAACTTAGATATACAGCTTGAGAAGCATTTGAGCAGGGTTTGGTCCAAAATTGAGGACAAAAGGCCTAAAGAAGAGTGGGAGATTGATTTAGCTAAATTGGATATAAGATATGTTGTAGCTCAAGGGACCTATGGTACTGTATACAGGGGTATTTATGATGAACAAGATGTTGCAGTGAAGCTGTTGGACTGGGGGGAGGATGGTTATGCCACAGCTGCTGAAACTGCTGCTCTGCGGGCATCATTTCAAAAAGAAGTTGCTGTTTGGCACAAGCTTGACCATCCTAATGTTACAAGGTTCATTGGAGCTTCAATGGGAACTTCTAATCTTAAGATTCCTTCAAAAAACTCTTCAAGCGATGATCCAAATTCTCATCCTGCTAGAGCATGTTGTGTTGTTGTGGAGTTTCTTGCTGGTGGGACACTAAAACAATATTTGATAAAAAACAGAAAAAAGAAACTTGCCTTGAAGGTTGTGATCCAACTTGCTTTGGACCTCTCAAGAGGTCTTAGCTATCTGCATTCCAAGAAAATTGTGCACCGTGATGTCAAAACAGAAAATATGTTGCTGGATATCGATAGAAACTTAAAAATAGCTGATTTTGGTGTTGCTCGCGTTGAAGCTCAAAATCCAAGGGACATGACTGGTGAAACCGGCACCTTAGGATACATGGCTCCAGAGGTTCTGGATGGTAAGCCATATAATAGAAGGTGTGATGTCTACAGTTTTGGCATATGCTTATGGGAAATGTACTGCTGCGATATGCCTTACCCTGACCTTAGCTTTGCTGATGTATCATCTGCTGTTGTTCGACAGAACTTACGACCAGAAATTCCGAGATGTTGTCCTAGTTCTTTGGCTAGTGTCATGCGGAAGTGCTGGGATGGAAATGCAAATAAACGACCTGAAATGGATGAGGTGGTGAGAATGTTGGAAGCAATTGATACAAGCAAAGGAGGTGGAATGATACCTGAAGACAAAAATCCGGGCTGTTTCTGTTTTGCCCCTGCTCGCGGTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

390

Amino Acids

43.72

Weight (kDa)

6.43

Isoelectric Point (pI)

31.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	87 - 361	1.7e-56	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	90 - 359	1.1e-46	Protein kinase domain
Pkinase_fungal	PF17667	218 - 293	4e-06	Fungal protein kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003595)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22750 AT4G14780
fragaria_vesca	FvH4_2g23120 FvH4_2g23120 FvH4_4g00810 FvH4_4g00810 FvH4_4g00810
malus_domestica	MD03G1260300.v1.1 MD11G1280600.v1.1 MD13G1197700.v1.1 MD16G1197600.v1.1
prunus_persica	Prupe.1G019000_v2.0.a1 Prupe.8G236500_v2.0.a1
pyrus_communis	pycom11g24840 pycom13g17120 pycom16g16650
rosa_chinensis	RchiOBHm_Chr4g0387361 RchiOBHm_Chr6g0290371
rosa_laevigata	RLG00000010127 RLG00000012225
rosa_multiflora	Rmu_sc0000013.1_g000027 Rmu_ssc0000094.1_g000001
rosa_roxburghii	Rroxscaffold_5G00334090 Rroxscaffold_7G00177130
rosa_rugosa	Rorug03G0308900 Rorug06G0212000
rosa_samantha	Rh4BG010400 Rh4DG011300 Rh4DG011700 Rh6AG322300 Rh6BG329700 Rh6CG335700
rosa_wichuraiana	Rw4G000960 Rw6G027830 Rw6G027930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	806
AccI	GTMKAC	2 cut(s)	291, 870
AccII	CGCG	2 cut(s)	765, 1164
AciI	CCGC	4 cut(s)	69, 385, 1021, 1164
AclWI	GGATC	4 cut(s)	12, 63, 506, 622
AcsI	RAATTY	3 cut(s)	76, 517, 981
AcuI	CTGAAG	1 cut(s)	1143
AfaI	GTAC	3 cut(s)	94, 286, 902
AfiI	CCNNNNNNNGG	1 cut(s)	1163
AflII	CTTAAG	1 cut(s)	479
AgsI	TTSAA	8 cut(s)	81, 148, 398, 462, 492, 504, 619, 770
Alw21I	GWGCWC	1 cut(s)	690
Alw44I	GTGCAC	1 cut(s)	686
AlwI	GGATC	4 cut(s)	12, 63, 506, 622
AlwNI	CAGNNNCTG	1 cut(s)	368
AoxI	GGCC	1 cut(s)	212
ApaLI	GTGCAC	1 cut(s)	686
ApeKI	GCWGC	3 cut(s)	365, 377, 906
ApoI	RAATTY	3 cut(s)	76, 517, 981
ArsI	GACNNNNNNTTYG	2 cut(s)	917, 949
AspS9I	GGNCC	4 cut(s)	192, 276, 643, 1166
AsuC2I	CCSGG	1 cut(s)	1137
AsuHPI	GGTGA	4 cut(s)	50, 83, 809, 1084
AvaII	GGWCC	4 cut(s)	192, 276, 643, 1166
AxyI	CCTNAGG	1 cut(s)	811
BaeGI	GKGCMC	1 cut(s)	690
BamHI	GGATCC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	806
BbsI	GAAGAC	1 cut(s)	1131
Bbv12I	GWGCWC	1 cut(s)	690
BbvI	GCAGC	3 cut(s)	352, 364, 893
BccI	CCATC	5 cut(s)	46, 344, 438, 833, 1028
BciVI	GTATCC	1 cut(s)	809
BcnI	CCSGG	1 cut(s)	1137
BfaI	CTAG	3 cut(s)	531, 999, 1011
BfmI	CTRYAG	1 cut(s)	871
BfrI	CTTAAG	1 cut(s)	479
BfuI	GTATCC	1 cut(s)	809
BisI	GCNGC	3 cut(s)	366, 378, 907
BlsI	GCNGC	3 cut(s)	367, 379, 908
Bme1390I	CCNGG	1 cut(s)	1137
Bme18I	GGWCC	4 cut(s)	192, 276, 643, 1166
BmgT120I	GGNCC	4 cut(s)	192, 276, 643, 1166
BmiI	GGNNCC	4 cut(s)	6, 277, 808, 825
BmrFI	CCNGG	1 cut(s)	1137
BmrI	ACTGGG	1 cut(s)	349
BmsI	GCATC	1 cut(s)	398
BmuI	ACTGGG	1 cut(s)	349
BpiI	GAAGAC	1 cut(s)	1131
BpmI	CTGGAG	1 cut(s)	810
Bpu10I	CCTNAGC	1 cut(s)	929
BpuEI	CTTGAG	3 cut(s)	188, 255, 634
BpuMI	CCSGG	1 cut(s)	1137
Bsa29I	ATCGAT	1 cut(s)	726
BsaJI	CCNNGG	1 cut(s)	782
Bsc4I	CCNNNNNNNGG	1 cut(s)	1163
Bse118I	RCCGGY	1 cut(s)	803
Bse1I	ACTGG	3 cut(s)	100, 344, 799
Bse21I	CCTNAGG	1 cut(s)	811
BseCI	ATCGAT	1 cut(s)	726
BseDI	CCNNGG	1 cut(s)	782
BseGI	GGATG	6 cut(s)	355, 430, 523, 844, 1039, 1069
BseLI	CCNNNNNNNGG	1 cut(s)	1163
BseNI	ACTGG	3 cut(s)	100, 344, 799
BseRI	GAGGAG	1 cut(s)	44
BseSI	GKGCMC	1 cut(s)	690
BseXI	GCAGC	3 cut(s)	352, 364, 893
BseYI	CCCAGC	1 cut(s)	1029
Bsh1236I	CGCG	2 cut(s)	765, 1164
BshFI	GGCC	1 cut(s)	214
BshNI	GGYRCC	1 cut(s)	806
BshVI	ATCGAT	1 cut(s)	726
BsiHKAI	GWGCWC	1 cut(s)	690
BsiSI	CCGG	2 cut(s)	804, 1136
BslFI	GGGAC	3 cut(s)	289, 583, 800
BslI	CCNNNNNNNGG	1 cut(s)	1163
BsmFI	GGGAC	3 cut(s)	289, 583, 800
BsmI	GAATGC	1 cut(s)	670
BsnI	GGCC	1 cut(s)	214
Bsp1286I	GDGCHC	1 cut(s)	690
Bsp143I	GATC	4 cut(s)	4, 55, 511, 627
BspACI	CCGC	4 cut(s)	69, 385, 1021, 1164
BspANI	GGCC	1 cut(s)	214
BspDI	ATCGAT	1 cut(s)	726
BspFNI	CGCG	2 cut(s)	765, 1164
BspLI	GGNNCC	4 cut(s)	6, 277, 808, 825
BspPI	GGATC	4 cut(s)	12, 63, 506, 622
BspT107I	GGYRCC	1 cut(s)	806
BspTI	CTTAAG	1 cut(s)	479
BsrFI	RCCGGY	1 cut(s)	803
BsrI	ACTGG	3 cut(s)	100, 344, 799
BssAI	RCCGGY	1 cut(s)	803
BssECI	CCNNGG	1 cut(s)	782
BssMI	GATC	4 cut(s)	4, 55, 511, 627
BssNAI	GTATAC	1 cut(s)	292
BssT1I	CCWWGG	1 cut(s)	782
Bst1107I	GTATAC	1 cut(s)	292
Bst4CI	ACNGT	3 cut(s)	289, 692, 875
Bst6I	CTCTTC	2 cut(s)	216, 505
BstAFI	CTTAAG	1 cut(s)	479
BstC8I	GCNNGC	3 cut(s)	387, 763, 1162
BstDEI	CTNAG	4 cut(s)	154, 659, 811, 929
BstF5I	GGATG	6 cut(s)	355, 430, 523, 844, 1039, 1069
BstFNI	CGCG	2 cut(s)	765, 1164
BstKTI	GATC	4 cut(s)	7, 58, 514, 630
BstMBI	GATC	4 cut(s)	4, 55, 511, 627
BstMWI	GCNNNNNNNGC	4 cut(s)	172, 365, 374, 386
BstNSI	RCATGY	1 cut(s)	540
BstSCI	CCNGG	1 cut(s)	1135
BstSFI	CTRYAG	1 cut(s)	871
BstSLI	GKGCMC	1 cut(s)	690
BstUI	CGCG	2 cut(s)	765, 1164
BstV1I	GCAGC	3 cut(s)	352, 364, 893
BstV2I	GAAGAC	1 cut(s)	1131
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BstZ17I	GTATAC	1 cut(s)	292
Bsu15I	ATCGAT	1 cut(s)	726
Bsu36I	CCTNAGG	1 cut(s)	811
BsuI	GTATCC	1 cut(s)	809
BsuRI	GGCC	1 cut(s)	214
BsuTUI	ATCGAT	1 cut(s)	726
BtgZI	GCGATG	1 cut(s)	522
BtsCI	GGATG	6 cut(s)	355, 430, 523, 844, 1039, 1069
BtsI	GCAGTG	1 cut(s)	330
BtsIMutI	CAGTG	1 cut(s)	330
Cac8I	GCNNGC	3 cut(s)	387, 763, 1162
CaiI	CAGNNNCTG	1 cut(s)	368
Cfr10I	RCCGGY	1 cut(s)	803
Cfr13I	GGNCC	4 cut(s)	192, 276, 643, 1166
ClaI	ATCGAT	1 cut(s)	726
Csp6I	GTAC	3 cut(s)	93, 285, 901
CspCI	CAANNNNNGTGG	2 cut(s)	1090, 1125
CviAII	CATG	4 cut(s)	537, 790, 820, 1018
CviQI	GTAC	3 cut(s)	93, 285, 901
DdeI	CTNAG	4 cut(s)	154, 659, 811, 929
DpnI	GATC	4 cut(s)	6, 57, 513, 629
DpnII	GATC	4 cut(s)	4, 55, 511, 627
Eam1104I	CTCTTC	2 cut(s)	216, 505
EarI	CTCTTC	2 cut(s)	216, 505
Eco130I	CCWWGG	1 cut(s)	782
Eco147I	AGGCCT	1 cut(s)	214
Eco32I	GATATC	1 cut(s)	724
Eco47I	GGWCC	4 cut(s)	192, 276, 643, 1166
Eco57I	CTGAAG	1 cut(s)	1143
Eco81I	CCTNAGG	1 cut(s)	811
EcoO109I	RGGNCCY	1 cut(s)	276
EcoRV	GATATC	1 cut(s)	724
EcoT14I	CCWWGG	1 cut(s)	782
ErhI	CCWWGG	1 cut(s)	782
FaeI	CATG	4 cut(s)	540, 793, 823, 1021
FaqI	GGGAC	3 cut(s)	289, 583, 800
FatI	CATG	4 cut(s)	536, 789, 819, 1017
FauI	CCCGC	1 cut(s)	378
FauNDI	CATATG	1 cut(s)	884
FblI	GTMKAC	2 cut(s)	291, 870
Fnu4HI	GCNGC	3 cut(s)	366, 378, 907
FokI	GGATG	6 cut(s)	362, 417, 510, 851, 1046, 1076
Fsp4HI	GCNGC	3 cut(s)	366, 378, 907
FspBI	CTAG	3 cut(s)	531, 999, 1011
GluI	GCNGC	3 cut(s)	366, 378, 907
GsaI	CCCAGC	1 cut(s)	1033
GsuI	CTGGAG	1 cut(s)	810
HaeIII	GGCC	1 cut(s)	214
HapII	CCGG	2 cut(s)	804, 1136
Hin1II	CATG	4 cut(s)	540, 793, 823, 1021
HindIII	AAGCTT	1 cut(s)	422
HinfI	GANTC	1 cut(s)	484
HpaII	CCGG	2 cut(s)	804, 1136
HphI	GGTGA	4 cut(s)	50, 83, 809, 1084
Hpy166II	GTNNAC	3 cut(s)	292, 688, 871
Hpy188I	TCNGA	2 cut(s)	128, 987
Hpy188III	TCNNGA	3 cut(s)	651, 827, 836
Hpy8I	GTNNAC	3 cut(s)	292, 688, 871
HpyAV	CCTTC	4 cut(s)	59, 498, 613, 852
HpyCH4III	ACNGT	3 cut(s)	289, 692, 875
HpyCH4V	TGCA	4 cut(s)	323, 670, 688, 1043
HpyF10VI	GCNNNNNNNGC	4 cut(s)	172, 365, 374, 386
HpyF3I	CTNAG	4 cut(s)	154, 659, 811, 929
Hsp92II	CATG	4 cut(s)	540, 793, 823, 1021
Kzo9I	GATC	4 cut(s)	4, 55, 511, 627
LmnI	GCTCC	2 cut(s)	455, 829
Lsp1109I	GCAGC	3 cut(s)	352, 364, 893
LweI	GCATC	1 cut(s)	398
MaeI	CTAG	3 cut(s)	531, 999, 1011
MaeIII	GTNAC	3 cut(s)	17, 107, 439
MalI	GATC	4 cut(s)	6, 57, 513, 629
MboI	GATC	4 cut(s)	4, 55, 511, 627
MboII	GAAGA	4 cut(s)	61, 233, 492, 1136
MfeI	CAATTG	1 cut(s)	1089
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	1 cut(s)	690
MluCI	AATT	8 cut(s)	76, 138, 198, 245, 517, 681, 981, 1089
MmeI	TCCRAC	3 cut(s)	315, 655, 1062
MseI	TTAA	2 cut(s)	480, 737
MslI	CAYNNNNRTG	2 cut(s)	435, 693
MspA1I	CMGCKG	1 cut(s)	365
MspCI	CTTAAG	1 cut(s)	479
MspI	CCGG	2 cut(s)	804, 1136
MspR9I	CCNGG	1 cut(s)	1137
MunI	CAATTG	1 cut(s)	1089
Mva1269I	GAATGC	1 cut(s)	670
MvnI	CGCG	2 cut(s)	765, 1164
MwoI	GCNNNNNNNGC	4 cut(s)	172, 365, 374, 386
NciI	CCSGG	1 cut(s)	1137
NdeI	CATATG	1 cut(s)	884
NdeII	GATC	4 cut(s)	4, 55, 511, 627
NlaIII	CATG	4 cut(s)	540, 793, 823, 1021
NlaIV	GGNNCC	4 cut(s)	6, 277, 808, 825
NmuCI	GTSAC	1 cut(s)	17
NspI	RCATGY	1 cut(s)	540
PceI	AGGCCT	1 cut(s)	214
PctI	GAATGC	1 cut(s)	670
PfeI	GAWTC	1 cut(s)	484
PkrI	GCNGC	3 cut(s)	367, 379, 908
PpuMI	RGGWCCY	1 cut(s)	276
Psp5II	RGGWCCY	1 cut(s)	276
PspFI	CCCAGC	1 cut(s)	1029
PspN4I	GGNNCC	4 cut(s)	6, 277, 808, 825
PspPI	GGNCC	4 cut(s)	192, 276, 643, 1166
PspPPI	RGGWCCY	1 cut(s)	276
PstNI	CAGNNNCTG	1 cut(s)	368
PsuI	RGATCY	1 cut(s)	4
PvuII	CAGCTG	1 cut(s)	365
RsaI	GTAC	3 cut(s)	94, 286, 902
RsaNI	GTAC	3 cut(s)	93, 285, 901
RseI	CAYNNNNRTG	2 cut(s)	435, 693
SaqAI	TTAA	2 cut(s)	480, 737
SatI	GCNGC	3 cut(s)	366, 378, 907
Sau3AI	GATC	4 cut(s)	4, 55, 511, 627
Sau96I	GGNCC	4 cut(s)	192, 276, 643, 1166
ScrFI	CCNGG	1 cut(s)	1137
SduI	GDGCHC	1 cut(s)	690
SfaNI	GCATC	1 cut(s)	398
SfcI	CTRYAG	1 cut(s)	871
SinI	GGWCC	4 cut(s)	192, 276, 643, 1166
SmiMI	CAYNNNNRTG	2 cut(s)	435, 693
SmlI	CTYRAG	4 cut(s)	167, 270, 479, 649
SmoI	CTYRAG	4 cut(s)	167, 270, 479, 649
Sse9I	AATT	8 cut(s)	76, 138, 198, 245, 517, 681, 981, 1089
SseBI	AGGCCT	1 cut(s)	214
SsiI	CCGC	4 cut(s)	69, 385, 1021, 1164
SspI	AATATT	2 cut(s)	25, 584
SspMI	CTAG	3 cut(s)	531, 999, 1011
StuI	AGGCCT	1 cut(s)	214
StyD4I	CCNGG	1 cut(s)	1135
StyI	CCWWGG	1 cut(s)	782
TaaI	ACNGT	3 cut(s)	289, 692, 875
TaqI	TCGA	3 cut(s)	63, 726, 961
TasI	AATT	8 cut(s)	76, 138, 198, 245, 517, 681, 981, 1089
TatI	WGTACW	1 cut(s)	900
TfiI	GAWTC	1 cut(s)	484
Tru1I	TTAA	2 cut(s)	480, 737
Tru9I	TTAA	2 cut(s)	480, 737
TscAI	CASTG	1 cut(s)	330
TseFI	GTSAC	1 cut(s)	17
TseI	GCWGC	3 cut(s)	365, 377, 906
Tsp45I	GTSAC	1 cut(s)	17
TspDTI	ATGAA	2 cut(s)	324, 439
TspRI	CASTG	1 cut(s)	330
Vha464I	CTTAAG	1 cut(s)	479
VneI	GTGCAC	1 cut(s)	686
VpaK11BI	GGWCC	4 cut(s)	192, 276, 643, 1166
XapI	RAATTY	3 cut(s)	76, 517, 981
XceI	RCATGY	1 cut(s)	540
XmiI	GTMKAC	2 cut(s)	291, 870
XspI	CTAG	3 cut(s)	531, 999, 1011

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.