Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003595

Physical Location & Seq

Genomic Coordinates Reverse (-)

33698758 .. 33699941

Gene Structure 1184 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0212000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGCTATTCAGTTACGAGAAAAGTTACCCTCAACTATACTTCTCTTCTCAAGTGGTTTGGAGGTTTCAGCTTTGCTTCCGGAAGGAGAAATCCAACTGCCTTTATGGGCCCTGTAGCAATGAGACATATCTTTTGAAGTCTTTGTTCTTCATCAGCATTGGCAGCAATGACATTTTTGAATACTACAGCTCAAACAGTTCAATTCCTAAGGAACAGTTCTTGTCTTCTTTCTTACTCGCTTATGAGAATCACTTGAAGTATCTAGTCGATCTTGGAGCAAGGAGGTTAAGAATTATCACCATCCCCCGGTTGGCTGCTGCCCATCTCAGAACTGGGAGGCTCAATGCTGAAAACTTCTGTAAACCAACACAGGCTGCTTATAATTTGGCTGCTGTAACCCTCTATGGTGGAATTAATTTTGCTCAGTTGGCTGACGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

146

Amino Acids

16.76

Weight (kDa)

9.06

Isoelectric Point (pI)

15.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003595)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22750 AT4G14780
fragaria_vesca	FvH4_2g23120 FvH4_2g23120 FvH4_4g00810 FvH4_4g00810 FvH4_4g00810
malus_domestica	MD03G1260300.v1.1 MD11G1280600.v1.1 MD13G1197700.v1.1 MD16G1197600.v1.1
prunus_persica	Prupe.1G019000_v2.0.a1 Prupe.8G236500_v2.0.a1
pyrus_communis	pycom11g24840 pycom13g17120 pycom16g16650
rosa_chinensis	RchiOBHm_Chr4g0387361 RchiOBHm_Chr6g0290371
rosa_laevigata	RLG00000010127 RLG00000012225
rosa_multiflora	Rmu_sc0000013.1_g000027 Rmu_ssc0000094.1_g000001
rosa_roxburghii	Rroxscaffold_5G00334090 Rroxscaffold_7G00177130
rosa_rugosa	Rorug03G0308900 Rorug06G0212000
rosa_samantha	Rh4BG010400 Rh4DG011300 Rh4DG011700 Rh6AG322300 Rh6BG329700 Rh6CG335700
rosa_wichuraiana	Rw4G000960 Rw6G027830 Rw6G027930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	381
AccIII	TCCGGA	1 cut(s)	78
AfiI	CCNNNNNNNGG	2 cut(s)	306, 310
AgsI	TTSAA	4 cut(s)	136, 179, 201, 256
AluBI	AGCT	2 cut(s)	70, 189
AluI	AGCT	2 cut(s)	70, 189
Alw26I	GTCTC	1 cut(s)	116
Aor13HI	TCCGGA	1 cut(s)	78
AoxI	GGCC	1 cut(s)	107
ApaI	GGGCCC	1 cut(s)	111
ApeKI	GCWGC	5 cut(s)	162, 314, 317, 374, 389
ArsI	GACNNNNNNTTYG	2 cut(s)	115, 147
AseI	ATTAAT	1 cut(s)	414
AspS9I	GGNCC	2 cut(s)	107, 108
AsuC2I	CCSGG	1 cut(s)	307
AsuHPI	GGTGA	1 cut(s)	289
AxyI	CCTNAGG	1 cut(s)	207
BaeGI	GKGCMC	1 cut(s)	111
BanII	GRGCYC	1 cut(s)	111
BbsI	GAAGAC	1 cut(s)	216
BbvI	GCAGC	5 cut(s)	174, 301, 304, 361, 376
BccI	CCATC	2 cut(s)	308, 330
BcnI	CCSGG	1 cut(s)	307
BcoDI	GTCTC	1 cut(s)	116
BfaI	CTAG	1 cut(s)	263
BfmI	CTRYAG	2 cut(s)	112, 184
BisI	GCNGC	5 cut(s)	163, 315, 318, 375, 390
BlsI	GCNGC	5 cut(s)	164, 316, 319, 376, 391
Bme1390I	CCNGG	1 cut(s)	307
BmgT120I	GGNCC	2 cut(s)	107, 108
BmiI	GGNNCC	1 cut(s)	109
BmrFI	CCNGG	1 cut(s)	307
BmrI	ACTGGG	1 cut(s)	342
BmuI	ACTGGG	1 cut(s)	342
BpiI	GAAGAC	1 cut(s)	216
BpuEI	CTTGAG	1 cut(s)	33
BpuMI	CCSGG	1 cut(s)	307
BsaJI	CCNNGG	1 cut(s)	305
BsaWI	WCCGGW	1 cut(s)	78
Bsc4I	CCNNNNNNNGG	2 cut(s)	306, 310
Bse1I	ACTGG	1 cut(s)	337
Bse21I	CCTNAGG	1 cut(s)	207
Bse3DI	GCAATG	2 cut(s)	124, 172
BseAI	TCCGGA	1 cut(s)	78
BseDI	CCNNGG	1 cut(s)	305
BseGI	GGATG	1 cut(s)	300
BseLI	CCNNNNNNNGG	2 cut(s)	306, 310
BseMI	GCAATG	2 cut(s)	124, 172
BseMII	CTCAG	2 cut(s)	340, 437
BseNI	ACTGG	1 cut(s)	337
BseSI	GKGCMC	1 cut(s)	111
BseXI	GCAGC	5 cut(s)	174, 301, 304, 361, 376
BshFI	GGCC	1 cut(s)	109
BsiSI	CCGG	2 cut(s)	79, 307
BslI	CCNNNNNNNGG	2 cut(s)	306, 310
BsmAI	GTCTC	1 cut(s)	116
BsnI	GGCC	1 cut(s)	109
Bsp120I	GGGCCC	1 cut(s)	107
Bsp1286I	GDGCHC	1 cut(s)	111
Bsp13I	TCCGGA	1 cut(s)	78
Bsp143I	GATC	1 cut(s)	268
BspANI	GGCC	1 cut(s)	109
BspCNI	CTCAG	2 cut(s)	339, 436
BspEI	TCCGGA	1 cut(s)	78
BspLI	GGNNCC	1 cut(s)	109
BsrDI	GCAATG	2 cut(s)	124, 172
BsrI	ACTGG	1 cut(s)	337
BssECI	CCNNGG	1 cut(s)	305
BssMI	GATC	1 cut(s)	268
Bst4CI	ACNGT	2 cut(s)	197, 216
Bst6I	CTCTTC	1 cut(s)	49
BstDEI	CTNAG	3 cut(s)	207, 326, 423
BstF5I	GGATG	1 cut(s)	300
BstKTI	GATC	1 cut(s)	271
BstMAI	GTCTC	1 cut(s)	116
BstMBI	GATC	1 cut(s)	268
BstMWI	GCNNNNNNNGC	2 cut(s)	162, 428
BstSCI	CCNGG	1 cut(s)	305
BstSFI	CTRYAG	2 cut(s)	112, 184
BstSLI	GKGCMC	1 cut(s)	111
BstV1I	GCAGC	5 cut(s)	174, 301, 304, 361, 376
BstV2I	GAAGAC	1 cut(s)	216
Bsu36I	CCTNAGG	1 cut(s)	207
BsuRI	GGCC	1 cut(s)	109
BtsCI	GGATG	1 cut(s)	300
Cfr13I	GGNCC	2 cut(s)	107, 108
CviJI	RGCY	8 cut(s)	70, 109, 189, 314, 340, 374, 389, 431
CviKI_1	RGCY	8 cut(s)	70, 109, 189, 314, 340, 374, 389, 431
DdeI	CTNAG	3 cut(s)	207, 326, 423
DpnI	GATC	1 cut(s)	270
DpnII	GATC	1 cut(s)	268
Eam1104I	CTCTTC	1 cut(s)	49
EarI	CTCTTC	1 cut(s)	49
Eco24I	GRGCYC	1 cut(s)	111
Eco81I	CCTNAGG	1 cut(s)	207
EcoO109I	RGGNCCY	1 cut(s)	108
EcoT38I	GRGCYC	1 cut(s)	111
FaiI	YATR	6 cut(s)	37, 105, 127, 243, 381, 405
Fnu4HI	GCNGC	5 cut(s)	163, 315, 318, 375, 390
FokI	GGATG	1 cut(s)	287
FriOI	GRGCYC	1 cut(s)	111
Fsp4HI	GCNGC	5 cut(s)	163, 315, 318, 375, 390
FspBI	CTAG	1 cut(s)	263
GluI	GCNGC	5 cut(s)	163, 315, 318, 375, 390
HaeIII	GGCC	1 cut(s)	109
HapII	CCGG	2 cut(s)	79, 307
HinfI	GANTC	1 cut(s)	247
HpaII	CCGG	2 cut(s)	79, 307
HphI	GGTGA	1 cut(s)	289
Hpy166II	GTNNAC	1 cut(s)	362
Hpy188I	TCNGA	1 cut(s)	329
Hpy188III	TCNNGA	1 cut(s)	79
Hpy8I	GTNNAC	1 cut(s)	362
HpyAV	CCTTC	1 cut(s)	76
HpyCH4III	ACNGT	2 cut(s)	197, 216
HpyF10VI	GCNNNNNNNGC	2 cut(s)	162, 428
HpyF3I	CTNAG	3 cut(s)	207, 326, 423
Kpn2I	TCCGGA	1 cut(s)	78
Kzo9I	GATC	1 cut(s)	268
LmnI	GCTCC	1 cut(s)	275
LpnPI	CCDG	5 cut(s)	92, 124, 318, 320, 356
Lsp1109I	GCAGC	5 cut(s)	174, 301, 304, 361, 376
MaeI	CTAG	1 cut(s)	263
MaeIII	GTNAC	3 cut(s)	11, 23, 394
MalI	GATC	1 cut(s)	270
MboI	GATC	1 cut(s)	268
MboII	GAAGA	3 cut(s)	36, 139, 216
MhlI	GDGCHC	1 cut(s)	111
MluCI	AATT	5 cut(s)	201, 291, 382, 411, 415
MmeI	TCCRAC	1 cut(s)	117
MnlI	CCTC	5 cut(s)	39, 54, 276, 330, 410
MroI	TCCGGA	1 cut(s)	78
MseI	TTAA	3 cut(s)	287, 414, 439
MspI	CCGG	2 cut(s)	79, 307
MspR9I	CCNGG	1 cut(s)	307
MwoI	GCNNNNNNNGC	2 cut(s)	162, 428
NciI	CCSGG	1 cut(s)	307
NdeII	GATC	1 cut(s)	268
NlaIV	GGNNCC	1 cut(s)	109
PfeI	GAWTC	1 cut(s)	247
PkrI	GCNGC	5 cut(s)	164, 316, 319, 376, 391
PshBI	ATTAAT	1 cut(s)	414
PsiI	TTATAA	1 cut(s)	381
PspN4I	GGNNCC	1 cut(s)	109
PspOMI	GGGCCC	1 cut(s)	107
PspPI	GGNCC	2 cut(s)	107, 108
SaqAI	TTAA	3 cut(s)	287, 414, 439
SatI	GCNGC	5 cut(s)	163, 315, 318, 375, 390
Sau3AI	GATC	1 cut(s)	268
Sau96I	GGNCC	2 cut(s)	107, 108
ScrFI	CCNGG	1 cut(s)	307
SduI	GDGCHC	1 cut(s)	111
SetI	ASST	4 cut(s)	65, 72, 191, 287
SfcI	CTRYAG	2 cut(s)	112, 184
SmlI	CTYRAG	1 cut(s)	48
SmoI	CTYRAG	1 cut(s)	48
Sse9I	AATT	5 cut(s)	201, 291, 382, 411, 415
SspMI	CTAG	1 cut(s)	263
StyD4I	CCNGG	1 cut(s)	305
TaaI	ACNGT	2 cut(s)	197, 216
TaqI	TCGA	1 cut(s)	267
TasI	AATT	5 cut(s)	201, 291, 382, 411, 415
TfiI	GAWTC	1 cut(s)	247
Tru1I	TTAA	3 cut(s)	287, 414, 439
Tru9I	TTAA	3 cut(s)	287, 414, 439
TseI	GCWGC	5 cut(s)	162, 314, 317, 374, 389
TspDTI	ATGAA	1 cut(s)	139
VspI	ATTAAT	1 cut(s)	414
XcmI	CCANNNNNNNNNTGG	2 cut(s)	307, 329
XspI	CTAG	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.