Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0003595

Physical Location & Seq

Genomic Coordinates Reverse (-)

16387644 .. 16390057

Gene Structure 2414 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012225

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGGATTCAAGCCACGGTGGTGAGGCAGTTGGAGGCATTGGGATAACTGAAAAGTCAAACATCATTGAAAACAATGATTCCTTTGGAACCCCCAATAGCACCAAAGAGAAGGCTTTGGGTTCATGTGTGGGGAAAGAAACGTTTTTTAGGGCGGATCAGATTGATTTCAAGAGCTGGGATATCCAGCTGGAGAAGCACTTAAGTAGGGGCTGGTCCAGGGAGAAGGAAGCGCAGACGCCAATGGAGGAGTGGGAGATTGATTTGGCTAAGTTGGATATAAGATATGTGATTGCTCATGGAACATATGGAACTGTGTACAGGGGTACCTATGATGGTCAAGATGTTGCAGTGAAGATATTGGATTGGGGTGAGGATAATATTGCCACAGCTGCTGAAACTGCTGCTCTTCGGGCGTCGTTTCAGCAAGAGGTTGCTGTCTGGCATAAGCTTGACCATCCAAATATTCCCAAGTTTGTTGGAGCTTCAATGGGAACTTCGAATCTTAAAATCCCTGTCAAAGGCACATCAAGTGATGGTCAAAGTCATAATTCTCCTCCTTCCAGAGCCTGTTGTGTTGTTGTTGAGTATGTTCCTGGTGGGACACTAAAGAACTATTTGATCAGGAATAGCAGAAAGAAACTTGCCTTTAAGATTGTGGTTCAACTTGCTTTAGATTTGTCTAAAGGTTTAAGTTATCTCCATGCAAAGAAAATTGTACACCGTGACGTCAAAACAGAAAATGTGTTGCTAGATAATCATAGAACTCTGAAAATTGCTGATTTTGGCGTTGCTCGAGTAGAAGCTCAGAATCCAAGGGACATGACCGGGGAGACTGGTACCCTTGGATACATGGCCCCAGAGGTCCTTGATGGTAAGCCTTACAACAGAAAATGTGACGTGTACAGTTTTGGTATTTGCTTATGGGAAATCTATTGTTGTGACATGCCTTATCCCAATCTTAGTTTTGCTGATGTCTCCTCTGCTGTCGTGCGACAGAATTTAAGACCTGAAATCCCAAGATGTTGTCCAACTGCACTGGCTAGCATTATGCGAAAATGTTGGGATGCAAACCCAGATAAACGCCCCGACATGGAAGAAGTAGTAAAGTTATTGTATGCAGTCGACACAAGCAAGGGAGGTGGCATGATACCGGAAGACCAAGCTTCTGCCTGTTCCTGTTTCGGCACACCTCGAGGCCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

401

Amino Acids

44.14

Weight (kDa)

6.33

Isoelectric Point (pI)

32.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	94 - 370	4.3e-59	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	97 - 370	1.9e-48	Protein kinase domain
Pkinase_fungal	PF17667	228 - 303	4.9e-06	Fungal protein kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003595)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22750 AT4G14780
fragaria_vesca	FvH4_2g23120 FvH4_2g23120 FvH4_4g00810 FvH4_4g00810 FvH4_4g00810
malus_domestica	MD03G1260300.v1.1 MD11G1280600.v1.1 MD13G1197700.v1.1 MD16G1197600.v1.1
prunus_persica	Prupe.1G019000_v2.0.a1 Prupe.8G236500_v2.0.a1
pyrus_communis	pycom11g24840 pycom13g17120 pycom16g16650
rosa_chinensis	RchiOBHm_Chr4g0387361 RchiOBHm_Chr6g0290371
rosa_laevigata	RLG00000010127 RLG00000012225
rosa_multiflora	Rmu_sc0000013.1_g000027 Rmu_ssc0000094.1_g000001
rosa_roxburghii	Rroxscaffold_5G00334090 Rroxscaffold_7G00177130
rosa_rugosa	Rorug03G0308900 Rorug06G0212000
rosa_samantha	Rh4BG010400 Rh4DG011300 Rh4DG011700 Rh6AG322300 Rh6BG329700 Rh6CG335700
rosa_wichuraiana	Rw4G000960 Rw6G027830 Rw6G027930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	729
AbsI	CCTCGAGG	1 cut(s)	1191
Acc65I	GGTACC	2 cut(s)	323, 836
AccB1I	GGYRCC	2 cut(s)	323, 836
AccI	GTMKAC	1 cut(s)	1122
AciI	CCGC	1 cut(s)	152
AclI	AACGTT	1 cut(s)	140
AclWI	GGATC	1 cut(s)	162
AcsI	RAATTY	1 cut(s)	997
AcyI	GRCGYC	3 cut(s)	236, 413, 726
AfaI	GTAC	5 cut(s)	317, 325, 717, 838, 902
AfiI	CCNNNNNNNGG	2 cut(s)	518, 1090
AflII	CTTAAG	1 cut(s)	199
AflIII	ACRYGT	1 cut(s)	897
AgsI	TTSAA	5 cut(s)	9, 68, 169, 486, 662
AjiI	CACGTC	1 cut(s)	898
AjnI	CCWGG	2 cut(s)	215, 592
AleI	CACNNNNGTG	1 cut(s)	18
AluBI	AGCT	7 cut(s)	174, 187, 389, 448, 482, 803, 1163
AluI	AGCT	7 cut(s)	174, 187, 389, 448, 482, 803, 1163
Alw26I	GTCTC	2 cut(s)	824, 979
AlwI	GGATC	1 cut(s)	162
AlwNI	CAGNNNCTG	2 cut(s)	392, 567
Ama87I	CYCGRG	2 cut(s)	792, 1191
AoxI	GGCC	2 cut(s)	852, 1195
ApeKI	GCWGC	2 cut(s)	389, 401
ApoI	RAATTY	1 cut(s)	997
Asp718I	GGTACC	2 cut(s)	323, 836
AspLEI	GCGC	1 cut(s)	232
AspS9I	GGNCC	4 cut(s)	213, 853, 862, 1196
AsuC2I	CCSGG	1 cut(s)	826
AsuHPI	GGTGA	2 cut(s)	32, 380
AsuII	TTCGAA	1 cut(s)	497
AsuNHI	GCTAGC	1 cut(s)	1040
AvaI	CYCGRG	2 cut(s)	792, 1191
AvaII	GGWCC	2 cut(s)	213, 862
BaeI	ACNNNNGTAYC	2 cut(s)	307, 340
BanI	GGYRCC	2 cut(s)	323, 836
BbsI	GAAGAC	1 cut(s)	1161
BbvI	GCAGC	2 cut(s)	376, 388
BccI	CCATC	4 cut(s)	326, 462, 527, 863
BciT130I	CCWGG	2 cut(s)	217, 594
BciVI	GTATCC	1 cut(s)	839
BclI	TGATCA	1 cut(s)	618
BcnI	CCSGG	1 cut(s)	826
BcoDI	GTCTC	2 cut(s)	824, 979
BfaI	CTAG	2 cut(s)	749, 1041
BfrI	CTTAAG	1 cut(s)	199
BfuI	GTATCC	1 cut(s)	839
BisI	GCNGC	2 cut(s)	390, 402
BlsI	GCNGC	2 cut(s)	391, 403
Bme1390I	CCNGG	3 cut(s)	217, 594, 826
Bme18I	GGWCC	2 cut(s)	213, 862
BmeT110I	CYCGRG	2 cut(s)	792, 1191
BmgBI	CACGTC	1 cut(s)	898
BmgT120I	GGNCC	4 cut(s)	213, 853, 862, 1196
BmiI	GGNNCC	5 cut(s)	88, 325, 838, 855, 1198
BmrFI	CCNGG	3 cut(s)	217, 594, 826
BmsI	GCATC	1 cut(s)	1054
BmtI	GCTAGC	1 cut(s)	1044
BpiI	GAAGAC	1 cut(s)	1161
BpmI	CTGGAG	1 cut(s)	209
Bpu14I	TTCGAA	1 cut(s)	497
BpuMI	CCSGG	1 cut(s)	826
BsaHI	GRCGYC	3 cut(s)	236, 413, 726
BsaJI	CCNNGG	5 cut(s)	13, 216, 812, 825, 841
BsaWI	WCCGGW	1 cut(s)	1150
Bsc4I	CCNNNNNNNGG	2 cut(s)	518, 1090
Bse1I	ACTGG	2 cut(s)	838, 1041
BseBI	CCWGG	2 cut(s)	217, 594
BseDI	CCNNGG	5 cut(s)	13, 216, 812, 825, 841
BseGI	GGATG	2 cut(s)	454, 1069
BseLI	CCNNNNNNNGG	2 cut(s)	518, 1090
BseMII	CTCAG	1 cut(s)	818
BseNI	ACTGG	2 cut(s)	838, 1041
BseRI	GAGGAG	3 cut(s)	260, 543, 967
BseXI	GCAGC	2 cut(s)	376, 388
BseYI	CCCAGC	1 cut(s)	174
BsgI	GTGCAG	1 cut(s)	1017
BshFI	GGCC	2 cut(s)	854, 1197
BshNI	GGYRCC	2 cut(s)	323, 836
BsiHKCI	CYCGRG	2 cut(s)	792, 1191
BsiSI	CCGG	2 cut(s)	825, 1151
BslFI	GGGAC	2 cut(s)	613, 830
BslI	CCNNNNNNNGG	2 cut(s)	518, 1090
BsmAI	GTCTC	2 cut(s)	824, 979
BsmFI	GGGAC	2 cut(s)	613, 830
BsnI	GGCC	2 cut(s)	854, 1197
BsoBI	CYCGRG	2 cut(s)	792, 1191
Bsp119I	TTCGAA	1 cut(s)	497
Bsp1407I	TGTACA	3 cut(s)	315, 715, 900
Bsp143I	GATC	2 cut(s)	154, 618
BspACI	CCGC	1 cut(s)	152
BspANI	GGCC	2 cut(s)	854, 1197
BspCNI	CTCAG	1 cut(s)	817
BspLI	GGNNCC	5 cut(s)	88, 325, 838, 855, 1198
BspOI	GCTAGC	1 cut(s)	1044
BspPI	GGATC	1 cut(s)	162
BspQI	GCTCTTC	1 cut(s)	411
BspT104I	TTCGAA	1 cut(s)	497
BspT107I	GGYRCC	2 cut(s)	323, 836
BspTI	CTTAAG	1 cut(s)	199
BsrGI	TGTACA	3 cut(s)	315, 715, 900
BsrI	ACTGG	2 cut(s)	838, 1041
BssECI	CCNNGG	5 cut(s)	13, 216, 812, 825, 841
BssMI	GATC	2 cut(s)	154, 618
BssNI	GRCGYC	3 cut(s)	236, 413, 726
BssT1I	CCWWGG	2 cut(s)	812, 841
Bst2UI	CCWGG	2 cut(s)	217, 594
Bst4CI	ACNGT	4 cut(s)	17, 313, 722, 905
Bst6I	CTCTTC	1 cut(s)	411
BstACI	GRCGYC	3 cut(s)	236, 413, 726
BstAFI	CTTAAG	1 cut(s)	199
BstAUI	TGTACA	3 cut(s)	315, 715, 900
BstBI	TTCGAA	1 cut(s)	497
BstC8I	GCNNGC	1 cut(s)	1042
BstDEI	CTNAG	3 cut(s)	267, 804, 959
BstDSI	CCRYGG	1 cut(s)	13
BstENI	CCTNNNNNAGG	1 cut(s)	516
BstF5I	GGATG	2 cut(s)	454, 1069
BstHHI	GCGC	1 cut(s)	232
BstKTI	GATC	2 cut(s)	157, 621
BstMAI	GTCTC	2 cut(s)	824, 979
BstMBI	GATC	2 cut(s)	154, 618
BstMWI	GCNNNNNNNGC	4 cut(s)	193, 389, 398, 410
BstNI	CCWGG	2 cut(s)	217, 594
BstNSI	RCATGY	1 cut(s)	946
BstSCI	CCNGG	3 cut(s)	215, 592, 824
BstV1I	GCAGC	2 cut(s)	376, 388
BstV2I	GAAGAC	1 cut(s)	1161
BsuI	GTATCC	1 cut(s)	839
BsuRI	GGCC	2 cut(s)	854, 1197
BtgI	CCRYGG	1 cut(s)	13
BtrI	CACGTC	1 cut(s)	898
BtsCI	GGATG	2 cut(s)	454, 1069
BtsI	GCAGTG	1 cut(s)	354
BtsIMutI	CAGTG	2 cut(s)	354, 1034
Cac8I	GCNNGC	1 cut(s)	1042
CaiI	CAGNNNCTG	2 cut(s)	392, 567
CfoI	GCGC	1 cut(s)	232
Cfr13I	GGNCC	4 cut(s)	213, 853, 862, 1196
CseI	GACGC	2 cut(s)	244, 402
Csp6I	GTAC	5 cut(s)	316, 324, 716, 837, 901
CspCI	CAANNNNNGTGG	2 cut(s)	1120, 1155
CviAII	CATG	8 cut(s)	123, 296, 701, 820, 850, 943, 1090, 1144
CviQI	GTAC	5 cut(s)	316, 324, 716, 837, 901
DdeI	CTNAG	3 cut(s)	267, 804, 959
DpnI	GATC	2 cut(s)	156, 620
DpnII	GATC	2 cut(s)	154, 618
Eam1104I	CTCTTC	1 cut(s)	411
EarI	CTCTTC	1 cut(s)	411
EciI	GGCGGA	1 cut(s)	167
Eco130I	CCWWGG	2 cut(s)	812, 841
Eco32I	GATATC	1 cut(s)	181
Eco47I	GGWCC	2 cut(s)	213, 862
Eco88I	CYCGRG	2 cut(s)	792, 1191
EcoNI	CCTNNNNNAGG	1 cut(s)	516
EcoO109I	RGGNCCY	2 cut(s)	862, 1196
EcoRII	CCWGG	2 cut(s)	215, 592
EcoRV	GATATC	1 cut(s)	181
EcoT14I	CCWWGG	2 cut(s)	812, 841
ErhI	CCWWGG	2 cut(s)	812, 841
FaeI	CATG	8 cut(s)	126, 299, 704, 823, 853, 946, 1093, 1147
FaqI	GGGAC	2 cut(s)	613, 830
FatI	CATG	8 cut(s)	122, 295, 700, 819, 849, 942, 1089, 1143
FauNDI	CATATG	1 cut(s)	304
FbaI	TGATCA	1 cut(s)	618
FblI	GTMKAC	1 cut(s)	1122
Fnu4HI	GCNGC	2 cut(s)	390, 402
FokI	GGATG	2 cut(s)	441, 1076
Fsp4HI	GCNGC	2 cut(s)	390, 402
FspBI	CTAG	2 cut(s)	749, 1041
GlaI	GCGC	1 cut(s)	231
GluI	GCNGC	2 cut(s)	390, 402
GsaI	CCCAGC	1 cut(s)	178
GsuI	CTGGAG	1 cut(s)	209
HaeIII	GGCC	2 cut(s)	854, 1197
HapII	CCGG	2 cut(s)	825, 1151
HgaI	GACGC	2 cut(s)	244, 402
HhaI	GCGC	1 cut(s)	232
Hin1I	GRCGYC	3 cut(s)	236, 413, 726
Hin1II	CATG	8 cut(s)	126, 299, 704, 823, 853, 946, 1093, 1147
Hin6I	GCGC	1 cut(s)	230
HinP1I	GCGC	1 cut(s)	230
HincII	GTYRAC	1 cut(s)	1123
HindII	GTYRAC	1 cut(s)	1123
HindIII	AAGCTT	2 cut(s)	446, 1161
HinfI	GANTC	4 cut(s)	5, 77, 499, 808
HpaII	CCGG	2 cut(s)	825, 1151
HphI	GGTGA	2 cut(s)	32, 380
Hpy166II	GTNNAC	4 cut(s)	316, 718, 901, 1123
Hpy188I	TCNGA	3 cut(s)	159, 768, 807
Hpy188III	TCNNGA	4 cut(s)	169, 338, 561, 622
Hpy8I	GTNNAC	4 cut(s)	316, 718, 901, 1123
Hpy99I	CGWCG	1 cut(s)	418
HpyAV	CCTTC	3 cut(s)	103, 217, 567
HpyCH4III	ACNGT	4 cut(s)	17, 313, 722, 905
HpyCH4IV	ACGT	3 cut(s)	140, 726, 897
HpyCH4V	TGCA	5 cut(s)	347, 704, 1034, 1067, 1118
HpyF10VI	GCNNNNNNNGC	4 cut(s)	193, 389, 398, 410
HpyF3I	CTNAG	3 cut(s)	267, 804, 959
HpySE526I	ACGT	3 cut(s)	140, 726, 897
Hsp92I	GRCGYC	3 cut(s)	236, 413, 726
Hsp92II	CATG	8 cut(s)	126, 299, 704, 823, 853, 946, 1093, 1147
HspAI	GCGC	1 cut(s)	230
KpnI	GGTACC	2 cut(s)	327, 840
Ksp22I	TGATCA	1 cut(s)	618
Kzo9I	GATC	2 cut(s)	154, 618
LguI	GCTCTTC	1 cut(s)	411
LmnI	GCTCC	1 cut(s)	479
Lsp1109I	GCAGC	2 cut(s)	376, 388
LweI	GCATC	1 cut(s)	1054
MaeI	CTAG	2 cut(s)	749, 1041
MaeII	ACGT	3 cut(s)	140, 726, 897
MaeIII	GTNAC	3 cut(s)	722, 893, 938
MalI	GATC	2 cut(s)	156, 620
MboI	GATC	2 cut(s)	154, 618
MboII	GAAGA	4 cut(s)	364, 398, 1106, 1166
MluCI	AATT	4 cut(s)	547, 711, 771, 997
MmeI	TCCRAC	4 cut(s)	10, 252, 457, 1052
MseI	TTAA	5 cut(s)	200, 504, 648, 689, 1001
MslI	CAYNNNNRTG	1 cut(s)	18
MspA1I	CMGCKG	2 cut(s)	187, 389
MspCI	CTTAAG	1 cut(s)	199
MspI	CCGG	2 cut(s)	825, 1151
MspR9I	CCNGG	3 cut(s)	217, 594, 826
MvaI	CCWGG	2 cut(s)	217, 594
MwoI	GCNNNNNNNGC	4 cut(s)	193, 389, 398, 410
NciI	CCSGG	1 cut(s)	826
NdeI	CATATG	1 cut(s)	304
NdeII	GATC	2 cut(s)	154, 618
NheI	GCTAGC	1 cut(s)	1040
NlaIII	CATG	8 cut(s)	126, 299, 704, 823, 853, 946, 1093, 1147
NlaIV	GGNNCC	5 cut(s)	88, 325, 838, 855, 1198
NmuCI	GTSAC	3 cut(s)	722, 893, 938
NspI	RCATGY	1 cut(s)	946
NspV	TTCGAA	1 cut(s)	497
OliI	CACNNNNGTG	1 cut(s)	18
PaeR7I	CTCGAG	2 cut(s)	792, 1191
PciSI	GCTCTTC	1 cut(s)	411
PfeI	GAWTC	4 cut(s)	5, 77, 499, 808
PkrI	GCNGC	2 cut(s)	391, 403
PpuMI	RGGWCCY	1 cut(s)	862
Psp1406I	AACGTT	1 cut(s)	140
Psp5II	RGGWCCY	1 cut(s)	862
Psp6I	CCWGG	2 cut(s)	215, 592
PspFI	CCCAGC	1 cut(s)	174
PspGI	CCWGG	2 cut(s)	215, 592
PspN4I	GGNNCC	5 cut(s)	88, 325, 838, 855, 1198
PspPI	GGNCC	4 cut(s)	213, 853, 862, 1196
PspPPI	RGGWCCY	1 cut(s)	862
PspXI	VCTCGAGB	2 cut(s)	792, 1191
PstNI	CAGNNNCTG	2 cut(s)	392, 567
PvuII	CAGCTG	2 cut(s)	187, 389
RsaI	GTAC	5 cut(s)	317, 325, 717, 838, 902
RsaNI	GTAC	5 cut(s)	316, 324, 716, 837, 901
RseI	CAYNNNNRTG	1 cut(s)	18
SalI	GTCGAC	1 cut(s)	1121
SapI	GCTCTTC	1 cut(s)	411
SaqAI	TTAA	5 cut(s)	200, 504, 648, 689, 1001
SatI	GCNGC	2 cut(s)	390, 402
Sau3AI	GATC	2 cut(s)	154, 618
Sau96I	GGNCC	4 cut(s)	213, 853, 862, 1196
ScrFI	CCNGG	3 cut(s)	217, 594, 826
SfaNI	GCATC	1 cut(s)	1054
Sfr274I	CTCGAG	2 cut(s)	792, 1191
SfuI	TTCGAA	1 cut(s)	497
SinI	GGWCC	2 cut(s)	213, 862
SlaI	CTCGAG	2 cut(s)	792, 1191
SmiMI	CAYNNNNRTG	1 cut(s)	18
SmlI	CTYRAG	3 cut(s)	199, 792, 1191
SmoI	CTYRAG	3 cut(s)	199, 792, 1191
Sse9I	AATT	4 cut(s)	547, 711, 771, 997
SsiI	CCGC	1 cut(s)	152
SspI	AATATT	2 cut(s)	379, 463
SspMI	CTAG	2 cut(s)	749, 1041
StyD4I	CCNGG	3 cut(s)	215, 592, 824
StyI	CCWWGG	2 cut(s)	812, 841
TaaI	ACNGT	4 cut(s)	17, 313, 722, 905
TaiI	ACGT	3 cut(s)	143, 729, 900
TaqI	TCGA	4 cut(s)	497, 793, 1122, 1192
TasI	AATT	4 cut(s)	547, 711, 771, 997
TatI	WGTACW	3 cut(s)	315, 715, 900
TfiI	GAWTC	4 cut(s)	5, 77, 499, 808
Tru1I	TTAA	5 cut(s)	200, 504, 648, 689, 1001
Tru9I	TTAA	5 cut(s)	200, 504, 648, 689, 1001
TscAI	CASTG	2 cut(s)	354, 1041
TseFI	GTSAC	3 cut(s)	722, 893, 938
TseI	GCWGC	2 cut(s)	389, 401
Tsp45I	GTSAC	3 cut(s)	722, 893, 938
TspDTI	ATGAA	1 cut(s)	111
TspRI	CASTG	2 cut(s)	354, 1041
Vha464I	CTTAAG	1 cut(s)	199
VpaK11BI	GGWCC	2 cut(s)	213, 862
XagI	CCTNNNNNAGG	1 cut(s)	516
XapI	RAATTY	1 cut(s)	997
XceI	RCATGY	1 cut(s)	946
XcmI	CCANNNNNNNNNTGG	1 cut(s)	246
XhoI	CTCGAG	2 cut(s)	792, 1191
XmiI	GTMKAC	1 cut(s)	1122
XspI	CTAG	2 cut(s)	749, 1041
ZraI	GACGTC	1 cut(s)	727

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.