Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0008121

Physical Location & Seq

Genomic Coordinates Forward (+)

21253501 .. 21254861

Gene Structure 1361 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g26480.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGCCGGTAGAGAGAGTTCAGGCATTGGCCTTTGGCGGGATCAAGGAGCTCCCGACCAAGTTCATCCGCCTCTTCCATGAGCAGCCACAGAACAGCAAGGCCGTGGAGGGAGTTGCAGTGCCGGTCATTTCCCTAGCATCGCCACATGAGGACCTTGTGGAAAAAGTTGCCGAGGCAGCTACTGAGTGGGGGTTCTTTCTCATCACTGACCATGGGGTGCCAGCTTCATTGATAGAGGAGTTACAGAAGGTTAGCAAAGAGTTTTTTATGCTGCCACAGGAGGAAAAGGAGGCCTATGCAAATGACCCTGCTAGTGGCAGATTTGATGGGGAAGTAAATGAGGAGTACAAGAAGGAAATGCTGAGAGTGACAGACAAGCTATTGGAGGTGCTTTCAGAGGGTCTAGGCCTGGATAGGAAGGTACTAAAATCGCATATTGGAGATGAAGAAATAGAATTGGAAATGAAGATAAATATGTACCCGCCATGCCCACAGCCCCAACTAGCCCTTGGTGTTGAGCCTCACACCGACATGTCCGCCCTCACCTTAGTAGTTTCGAATGATGTTCCTGGCCTTCAGCTCTGGAAGGATGAAAAGTGGGTTGCTGTTAATTACCCGCCCAATGCAATCTTTGTGAACATTGGTGATCAGATGGAGATCTTGAGCAATGGTAAGTACAAGAGTGTTCTTCACAGGAGCTTGGTGAACAAGGAACGCATGCGCATGTCGTGGGCTGTGTTCATTGTGCCGCCACATGAGGCTGTGATTGGCCCTCTGCCGGAGCTTGTTGATGAGCAAAATCCTGCCAAATACTCGACCAAAACATACAGCGAATACCGATACCGCAAATTCAATAAGATCCCACAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00941 ko01100 ko01110 map00941 map01100 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

290

Amino Acids

32.74

Weight (kDa)

5.17

Isoelectric Point (pI)

50.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	40 - 110	3.7e-20	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	155 - 250	1.5e-30	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008121)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g26480
malus_domestica	MD15G1353800.v1.1
prunus_persica	Prupe.1G502300_v2.0.a1 Prupe.1G502500_v2.0.a1 Prupe.I003900_v2.0.a1 Prupe.I003900_v2.0.a1
pyrus_communis	pycom15g31720
rosa_chinensis	RchiOBHm_Chr6g0295241
rosa_laevigata	RLG00000011816
rosa_multiflora	Rmu_sc0007232.1_g000003 Rmu_sc0007232.1_g000004 Rmu_sc0010768.1_g000002
rosa_roxburghii	Rroxscaffold_171G00441440 Rroxscaffold_7G00172630 Rroxscaffold_7G00172650
rosa_rugosa	Rorug06G0249700 Rorug06G0249800.1 Rorug06G0249900
rosa_samantha	Rh6AG362800 Rh6BG370800 Rh6CG377100 Rh6DG363600
rosa_wichuraiana	Rw6G031660 Rw7G022060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	722
AccB1I	GGYRCC	1 cut(s)	217
AciI	CCGC	7 cut(s)	36, 67, 482, 537, 617, 749, 844
AclWI	GGATC	2 cut(s)	47, 853
AcsI	RAATTY	1 cut(s)	848
AcuI	CTGAAG	1 cut(s)	560
AfaI	GTAC	4 cut(s)	347, 423, 479, 677
AfiI	CCNNNNNNNGG	3 cut(s)	36, 314, 778
AflIII	ACRYGT	1 cut(s)	531
AgsI	TTSAA	1 cut(s)	853
AjnI	CCWGG	2 cut(s)	408, 568
AluBI	AGCT	7 cut(s)	49, 179, 224, 379, 580, 699, 784
AluI	AGCT	7 cut(s)	49, 179, 224, 379, 580, 699, 784
Alw21I	GWGCWC	1 cut(s)	51
AlwI	GGATC	2 cut(s)	47, 853
AlwNI	CAGNNNCTG	1 cut(s)	182
AoxI	GGCC	6 cut(s)	27, 99, 291, 406, 571, 769
ApeKI	GCWGC	3 cut(s)	82, 176, 271
ApoI	RAATTY	1 cut(s)	848
AspLEI	GCGC	1 cut(s)	723
AspS9I	GGNCC	2 cut(s)	151, 770
AsuHPI	GGTGA	3 cut(s)	535, 656, 715
AsuII	TTCGAA	1 cut(s)	557
AvaII	GGWCC	1 cut(s)	151
BanI	GGYRCC	1 cut(s)	217
BanII	GRGCYC	1 cut(s)	51
Bbv12I	GWGCWC	1 cut(s)	51
BbvI	GCAGC	3 cut(s)	94, 188, 258
BccI	CCATC	2 cut(s)	320, 646
BceAI	ACGGC	1 cut(s)	86
BciT130I	CCWGG	2 cut(s)	410, 570
BclI	TGATCA	1 cut(s)	646
BfaI	CTAG	4 cut(s)	134, 312, 404, 503
BglII	AGATCT	1 cut(s)	657
BisI	GCNGC	4 cut(s)	83, 177, 272, 749
BlsI	GCNGC	4 cut(s)	84, 178, 273, 750
Bme1390I	CCNGG	2 cut(s)	410, 570
Bme18I	GGWCC	1 cut(s)	151
BmgT120I	GGNCC	2 cut(s)	151, 770
BmiI	GGNNCC	1 cut(s)	219
BmrFI	CCNGG	2 cut(s)	410, 570
BmsI	GCATC	1 cut(s)	146
Bpu14I	TTCGAA	1 cut(s)	557
BpuEI	CTTGAG	1 cut(s)	682
BsaBI	GATNNNNATC	1 cut(s)	656
BsaJI	CCNNGG	4 cut(s)	102, 171, 211, 508
BsaXI	ACNNNNNCTCC	2 cut(s)	102, 132
Bsc4I	CCNNNNNNNGG	3 cut(s)	36, 314, 778
Bse118I	RCCGGY	2 cut(s)	4, 121
Bse3DI	GCAATG	1 cut(s)	673
Bse8I	GATNNNNATC	1 cut(s)	656
BseBI	CCWGG	2 cut(s)	410, 570
BseDI	CCNNGG	4 cut(s)	102, 171, 211, 508
BseGI	GGATG	2 cut(s)	63, 595
BseJI	GATNNNNATC	1 cut(s)	656
BseLI	CCNNNNNNNGG	3 cut(s)	36, 314, 778
BseMI	GCAATG	1 cut(s)	673
BseMII	CTCAG	2 cut(s)	174, 353
BseRI	GAGGAG	2 cut(s)	251, 356
BseXI	GCAGC	3 cut(s)	94, 188, 258
BshFI	GGCC	6 cut(s)	29, 101, 293, 408, 573, 771
BshNI	GGYRCC	1 cut(s)	217
BsiHKAI	GWGCWC	1 cut(s)	51
BsiSI	CCGG	3 cut(s)	5, 122, 779
BslI	CCNNNNNNNGG	3 cut(s)	36, 314, 778
BsnI	GGCC	6 cut(s)	29, 101, 293, 408, 573, 771
Bsp119I	TTCGAA	1 cut(s)	557
Bsp1286I	GDGCHC	1 cut(s)	51
Bsp143I	GATC	4 cut(s)	39, 646, 657, 858
Bsp19I	CCATGG	1 cut(s)	211
BspACI	CCGC	7 cut(s)	36, 67, 482, 537, 617, 749, 844
BspANI	GGCC	6 cut(s)	29, 101, 293, 408, 573, 771
BspCNI	CTCAG	2 cut(s)	175, 354
BspLI	GGNNCC	1 cut(s)	219
BspPI	GGATC	2 cut(s)	47, 853
BspT104I	TTCGAA	1 cut(s)	557
BspT107I	GGYRCC	1 cut(s)	217
BsrDI	GCAATG	1 cut(s)	673
BsrFI	RCCGGY	2 cut(s)	4, 121
BssAI	RCCGGY	2 cut(s)	4, 121
BssECI	CCNNGG	4 cut(s)	102, 171, 211, 508
BssMI	GATC	4 cut(s)	39, 646, 657, 858
BssT1I	CCWWGG	2 cut(s)	211, 508
Bst2UI	CCWGG	2 cut(s)	410, 570
Bst6I	CTCTTC	1 cut(s)	77
BstBI	TTCGAA	1 cut(s)	557
BstC8I	GCNNGC	2 cut(s)	222, 719
BstDEI	CTNAG	3 cut(s)	183, 362, 547
BstDSI	CCRYGG	2 cut(s)	102, 211
BstF5I	GGATG	2 cut(s)	63, 595
BstHHI	GCGC	1 cut(s)	723
BstKTI	GATC	4 cut(s)	42, 649, 660, 861
BstMBI	GATC	4 cut(s)	39, 646, 657, 858
BstMWI	GCNNNNNNNGC	1 cut(s)	176
BstNI	CCWGG	2 cut(s)	410, 570
BstNSI	RCATGY	3 cut(s)	535, 721, 727
BstSCI	CCNGG	2 cut(s)	408, 568
BstV1I	GCAGC	3 cut(s)	94, 188, 258
BstX2I	RGATCY	2 cut(s)	657, 858
BstYI	RGATCY	2 cut(s)	657, 858
BsuRI	GGCC	6 cut(s)	29, 101, 293, 408, 573, 771
BtgI	CCRYGG	2 cut(s)	102, 211
BtgZI	GCGATG	1 cut(s)	123
BtsCI	GGATG	2 cut(s)	63, 595
BtsI	GCAGTG	1 cut(s)	123
BtsIMutI	CAGTG	2 cut(s)	123, 204
Cac8I	GCNNGC	2 cut(s)	222, 719
CaiI	CAGNNNCTG	1 cut(s)	182
CfoI	GCGC	1 cut(s)	723
Cfr10I	RCCGGY	2 cut(s)	4, 121
Cfr13I	GGNCC	2 cut(s)	151, 770
Csp6I	GTAC	4 cut(s)	346, 422, 478, 676
CviAII	CATG	8 cut(s)	77, 146, 212, 486, 532, 718, 724, 755
CviQI	GTAC	4 cut(s)	346, 422, 478, 676
DdeI	CTNAG	3 cut(s)	183, 362, 547
DpnI	GATC	4 cut(s)	41, 648, 659, 860
DpnII	GATC	4 cut(s)	39, 646, 657, 858
Eam1104I	CTCTTC	1 cut(s)	77
EarI	CTCTTC	1 cut(s)	77
EciI	GGCGGA	2 cut(s)	56, 526
Ecl136II	GAGCTC	1 cut(s)	49
Eco130I	CCWWGG	2 cut(s)	211, 508
Eco147I	AGGCCT	2 cut(s)	293, 408
Eco24I	GRGCYC	1 cut(s)	51
Eco47I	GGWCC	1 cut(s)	151
Eco53kI	GAGCTC	1 cut(s)	49
Eco57I	CTGAAG	1 cut(s)	560
EcoICRI	GAGCTC	1 cut(s)	49
EcoO109I	RGGNCCY	1 cut(s)	151
EcoRII	CCWGG	2 cut(s)	408, 568
EcoT14I	CCWWGG	2 cut(s)	211, 508
EcoT38I	GRGCYC	1 cut(s)	51
ErhI	CCWWGG	2 cut(s)	211, 508
FaeI	CATG	8 cut(s)	80, 149, 215, 489, 535, 721, 727, 758
FatI	CATG	8 cut(s)	76, 145, 211, 485, 531, 717, 723, 754
FauI	CCCGC	3 cut(s)	29, 489, 624
FbaI	TGATCA	1 cut(s)	646
Fnu4HI	GCNGC	4 cut(s)	83, 177, 272, 749
FokI	GGATG	2 cut(s)	50, 602
FriOI	GRGCYC	1 cut(s)	51
Fsp4HI	GCNGC	4 cut(s)	83, 177, 272, 749
FspAI	RTGCGCAY	1 cut(s)	722
FspBI	CTAG	4 cut(s)	134, 312, 404, 503
FspI	TGCGCA	1 cut(s)	722
GlaI	GCGC	1 cut(s)	722
GluI	GCNGC	4 cut(s)	83, 177, 272, 749
HaeIII	GGCC	6 cut(s)	29, 101, 293, 408, 573, 771
HapII	CCGG	3 cut(s)	5, 122, 779
HhaI	GCGC	1 cut(s)	723
Hin1II	CATG	8 cut(s)	80, 149, 215, 489, 535, 721, 727, 758
Hin6I	GCGC	1 cut(s)	721
HinP1I	GCGC	1 cut(s)	721
HpaII	CCGG	3 cut(s)	5, 122, 779
HphI	GGTGA	3 cut(s)	535, 656, 715
Hpy166II	GTNNAC	2 cut(s)	637, 706
Hpy188I	TCNGA	2 cut(s)	397, 651
Hpy188III	TCNNGA	3 cut(s)	52, 583, 661
Hpy8I	GTNNAC	2 cut(s)	637, 706
HpyAV	CCTTC	5 cut(s)	241, 346, 412, 580, 584
HpyCH4V	TGCA	3 cut(s)	116, 299, 626
HpyF10VI	GCNNNNNNNGC	1 cut(s)	176
HpyF3I	CTNAG	3 cut(s)	183, 362, 547
Hsp92II	CATG	8 cut(s)	80, 149, 215, 489, 535, 721, 727, 758
HspAI	GCGC	1 cut(s)	721
Ksp22I	TGATCA	1 cut(s)	646
Kzo9I	GATC	4 cut(s)	39, 646, 657, 858
LmnI	GCTCC	4 cut(s)	46, 54, 696, 781
Lsp1109I	GCAGC	3 cut(s)	94, 188, 258
LweI	GCATC	1 cut(s)	146
MaeI	CTAG	4 cut(s)	134, 312, 404, 503
MaeIII	GTNAC	2 cut(s)	240, 367
MalI	GATC	4 cut(s)	41, 648, 659, 860
MboI	GATC	4 cut(s)	39, 646, 657, 858
MboII	GAAGA	4 cut(s)	64, 458, 478, 680
MflI	RGATCY	2 cut(s)	657, 858
MhlI	GDGCHC	1 cut(s)	51
MluCI	AATT	3 cut(s)	455, 610, 848
MseI	TTAA	1 cut(s)	609
MslI	CAYNNNNRTG	2 cut(s)	530, 722
MspI	CCGG	3 cut(s)	5, 122, 779
MspR9I	CCNGG	2 cut(s)	410, 570
MvaI	CCWGG	2 cut(s)	410, 570
MwoI	GCNNNNNNNGC	1 cut(s)	176
NcoI	CCATGG	1 cut(s)	211
NdeII	GATC	4 cut(s)	39, 646, 657, 858
NlaIII	CATG	8 cut(s)	80, 149, 215, 489, 535, 721, 727, 758
NlaIV	GGNNCC	1 cut(s)	219
NmeAIII	GCCGAG	1 cut(s)	196
NmuCI	GTSAC	1 cut(s)	367
NsbI	TGCGCA	1 cut(s)	722
NspI	RCATGY	3 cut(s)	535, 721, 727
NspV	TTCGAA	1 cut(s)	557
PaeI	GCATGC	1 cut(s)	721
PceI	AGGCCT	2 cut(s)	293, 408
PciI	ACATGT	1 cut(s)	531
PkrI	GCNGC	4 cut(s)	84, 178, 273, 750
PpuMI	RGGWCCY	1 cut(s)	151
PscI	ACATGT	1 cut(s)	531
Psp124BI	GAGCTC	1 cut(s)	51
Psp5II	RGGWCCY	1 cut(s)	151
Psp6I	CCWGG	2 cut(s)	408, 568
PspGI	CCWGG	2 cut(s)	408, 568
PspN4I	GGNNCC	1 cut(s)	219
PspPI	GGNCC	2 cut(s)	151, 770
PspPPI	RGGWCCY	1 cut(s)	151
PsrI	GAACNNNNNNTAC	1 cut(s)	32
PstNI	CAGNNNCTG	1 cut(s)	182
PsuI	RGATCY	2 cut(s)	657, 858
RsaI	GTAC	4 cut(s)	347, 423, 479, 677
RsaNI	GTAC	4 cut(s)	346, 422, 478, 676
RseI	CAYNNNNRTG	2 cut(s)	530, 722
SacI	GAGCTC	1 cut(s)	51
SaqAI	TTAA	1 cut(s)	609
SatI	GCNGC	4 cut(s)	83, 177, 272, 749
Sau3AI	GATC	4 cut(s)	39, 646, 657, 858
Sau96I	GGNCC	2 cut(s)	151, 770
ScrFI	CCNGG	2 cut(s)	410, 570
SduI	GDGCHC	1 cut(s)	51
SfaNI	GCATC	1 cut(s)	146
SfuI	TTCGAA	1 cut(s)	557
SinI	GGWCC	1 cut(s)	151
SmiMI	CAYNNNNRTG	2 cut(s)	530, 722
SmlI	CTYRAG	1 cut(s)	661
SmoI	CTYRAG	1 cut(s)	661
SphI	GCATGC	1 cut(s)	721
Sse9I	AATT	3 cut(s)	455, 610, 848
SseBI	AGGCCT	2 cut(s)	293, 408
SsiI	CCGC	7 cut(s)	36, 67, 482, 537, 617, 749, 844
SspMI	CTAG	4 cut(s)	134, 312, 404, 503
SstI	GAGCTC	1 cut(s)	51
StuI	AGGCCT	2 cut(s)	293, 408
StyD4I	CCNGG	2 cut(s)	408, 568
StyI	CCWWGG	2 cut(s)	211, 508
TaqI	TCGA	2 cut(s)	557, 815
TasI	AATT	3 cut(s)	455, 610, 848
TatI	WGTACW	2 cut(s)	345, 675
TauI	GCSGC	1 cut(s)	751
Tru1I	TTAA	1 cut(s)	609
Tru9I	TTAA	1 cut(s)	609
TscAI	CASTG	2 cut(s)	123, 211
TseFI	GTSAC	1 cut(s)	367
TseI	GCWGC	3 cut(s)	82, 176, 271
Tsp45I	GTSAC	1 cut(s)	367
TspDTI	ATGAA	6 cut(s)	52, 216, 459, 479, 606, 730
TspRI	CASTG	2 cut(s)	123, 211
VpaK11BI	GGWCC	1 cut(s)	151
XapI	RAATTY	1 cut(s)	848
XceI	RCATGY	3 cut(s)	535, 721, 727
XcmI	CCANNNNNNNNNTGG	1 cut(s)	506
XspI	CTAG	4 cut(s)	134, 312, 404, 503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.