Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

scaffold_30

Orthogroup ID

OG0008121

Physical Location & Seq

Genomic Coordinates Forward (+)

7125 .. 8645

Gene Structure 1521 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.I003900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGAGGTGGAGAGAGTGCAGGCCTTGGCCATCAGCGGGCTGAACGAGCTTCCAGCGAAGTTCGTTCGACCAGCCCATGAGCAGCCCGAGAATAGCAAGGCCCTAGATGGAGTCACGGTGCCTGTGATCTCCCTCGCTCAGCCTCATGATGTTGTGGTCAAGGAGGTGGCAGCGGCAGCCACTGTATGGGGCTTCTTTCTCATTACTGACCACGGCATACCGTCACCTTTGATCCAGCAATTGCAGAAGGTAGGGCATGAGTTCTTTTTGCTCCCACAGAAGGAGAAAGAGGCCTATGCAAATGACCCAGCCAACGGGAGGTTCGATGGGTATGGGACAAAGATGACCAAGAACCATGACGGGAAGGTCGAGTGGATCGACTATTTTTTCCATCTGACTGCCCCTCCATCTAAGGTCAACTATGAAATCTGGCCTAAGAACCCTCCATCTTACAGGGAAGTGAATGACCAATACAACAAGGAGATGCAAAGAGTAACAGACAAGTTACTGGAGGTGCTTTCAGAGGGTCTAGGGCTGGAAGCAAAGGTTTTGAAATCTCATATGGGAAATGAAGAAGTAGAATTGGAAATGAAAATCAACATGTACCCTCCATGCCCACAACCCCAACTGGCCCTAGGAGTTGAGCCTCACACTGACATGTCAGCCCTAACCCTGCTAGTCTCCAATGATGTTCCAGGCCTTCAGCTGTGGAAAGATGACAACTGGGTTGCTGTCAATTACTTTCCAAATTCAGTTTTTTACAAGAGTGTTCTTCACAGAAGCTTGGTGAACAAGGAACGTATGCGCATGTCGTGGGCTGTTTTTGTTGCTCCTCCGCACGAGGCTGTGATTGGGCCTCTGCCGGAGCTTCTGGACGAGAAAAACCCTGCCAAATACTCAACCAAGACATATGCTGAATACCGACACCGGAAATTCAACAAGCTCCCGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00941 ko01100 ko01110 map00941 map01100 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

318

Amino Acids

36.01

Weight (kDa)

6.02

Isoelectric Point (pI)

38.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008121)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g26480
malus_domestica	MD15G1353800.v1.1
prunus_persica	Prupe.1G502300_v2.0.a1 Prupe.1G502500_v2.0.a1 Prupe.I003900_v2.0.a1 Prupe.I003900_v2.0.a1
pyrus_communis	pycom15g31720
rosa_chinensis	RchiOBHm_Chr6g0295241
rosa_laevigata	RLG00000011816
rosa_multiflora	Rmu_sc0007232.1_g000003 Rmu_sc0007232.1_g000004 Rmu_sc0010768.1_g000002
rosa_roxburghii	Rroxscaffold_171G00441440 Rroxscaffold_7G00172630 Rroxscaffold_7G00172650
rosa_rugosa	Rorug06G0249700 Rorug06G0249800.1 Rorug06G0249900
rosa_samantha	Rh6AG362800 Rh6BG370800 Rh6CG377100 Rh6DG363600
rosa_wichuraiana	Rw6G031660 Rw7G022060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	365
Acc16I	TGCGCA	1 cut(s)	806
AccB1I	GGYRCC	1 cut(s)	118
AccB7I	CCANNNNNTGG	1 cut(s)	186
AciI	CCGC	4 cut(s)	36, 173, 836, 947
AclWI	GGATC	2 cut(s)	226, 383
AcoI	YGGCCR	1 cut(s)	27
AcsI	RAATTY	2 cut(s)	748, 932
AcuI	CTGAAG	1 cut(s)	686
AfaI	GTAC	1 cut(s)	605
AfiI	CCNNNNNNNGG	5 cut(s)	36, 186, 280, 314, 318
AflIII	ACRYGT	2 cut(s)	600, 657
AgsI	TTSAA	2 cut(s)	553, 937
AjnI	CCWGG	1 cut(s)	694
AjuI	GAANNNNNNNTTGG	2 cut(s)	305, 337
AluBI	AGCT	5 cut(s)	49, 706, 783, 868, 943
AluI	AGCT	5 cut(s)	49, 706, 783, 868, 943
Alw26I	GTCTC	1 cut(s)	685
AlwI	GGATC	2 cut(s)	226, 383
AlwNI	CAGNNNCTG	1 cut(s)	182
Ama87I	CYCGRG	1 cut(s)	86
AoxI	GGCC	8 cut(s)	21, 27, 99, 291, 431, 630, 697, 854
ApeKI	GCWGC	3 cut(s)	82, 170, 176
ApoI	RAATTY	2 cut(s)	748, 932
AspA2I	CCTAGG	1 cut(s)	634
AspLEI	GCGC	1 cut(s)	807
AspS9I	GGNCC	3 cut(s)	100, 631, 854
AsuHPI	GGTGA	2 cut(s)	216, 799
AvaI	CYCGRG	1 cut(s)	86
AvrII	CCTAGG	1 cut(s)	634
BalI	TGGCCA	1 cut(s)	29
BanI	GGYRCC	1 cut(s)	118
BauI	CACGAG	1 cut(s)	839
BbvI	GCAGC	3 cut(s)	94, 182, 188
BccI	CCATC	6 cut(s)	38, 101, 320, 399, 415, 454
BceAI	ACGGC	1 cut(s)	229
BciT130I	CCWGG	1 cut(s)	696
BcoDI	GTCTC	1 cut(s)	685
BfaI	CTAG	4 cut(s)	104, 530, 635, 677
BisI	GCNGC	4 cut(s)	83, 171, 174, 177
BlnI	CCTAGG	1 cut(s)	634
BlpI	GCTNAGC	1 cut(s)	138
BlsI	GCNGC	4 cut(s)	84, 172, 175, 178
Bme1390I	CCNGG	1 cut(s)	696
BmeT110I	CYCGRG	1 cut(s)	86
BmgT120I	GGNCC	3 cut(s)	100, 631, 854
BmiI	GGNNCC	1 cut(s)	120
BmrFI	CCNGG	1 cut(s)	696
BmrI	ACTGGG	1 cut(s)	733
BmsI	GCATC	1 cut(s)	474
BmuI	ACTGGG	1 cut(s)	733
BpmI	CTGGAG	1 cut(s)	530
Bpu1102I	GCTNAGC	1 cut(s)	138
BsaJI	CCNNGG	3 cut(s)	24, 211, 634
BsaWI	WCCGGW	1 cut(s)	927
BsaXI	ACNNNNNCTCC	4 cut(s)	102, 132, 388, 418
Bsc4I	CCNNNNNNNGG	5 cut(s)	36, 186, 280, 314, 318
Bse1I	ACTGG	3 cut(s)	513, 633, 728
BseBI	CCWGG	1 cut(s)	696
BseDI	CCNNGG	3 cut(s)	24, 211, 634
BseLI	CCNNNNNNNGG	5 cut(s)	36, 186, 280, 314, 318
BseMII	CTCAG	1 cut(s)	152
BseNI	ACTGG	3 cut(s)	513, 633, 728
BseRI	GAGGAG	1 cut(s)	822
BseXI	GCAGC	3 cut(s)	94, 182, 188
BseYI	CCCAGC	1 cut(s)	307
BsgI	GTGCAG	1 cut(s)	38
BshFI	GGCC	8 cut(s)	23, 29, 101, 293, 433, 632, 699, 856
BshNI	GGYRCC	1 cut(s)	118
BsiHKCI	CYCGRG	1 cut(s)	86
BsiSI	CCGG	2 cut(s)	863, 928
BslFI	GGGAC	1 cut(s)	349
BslI	CCNNNNNNNGG	5 cut(s)	36, 186, 280, 314, 318
BsmAI	GTCTC	1 cut(s)	685
BsmFI	GGGAC	1 cut(s)	349
BsnI	GGCC	8 cut(s)	23, 29, 101, 293, 433, 632, 699, 856
BsoBI	CYCGRG	1 cut(s)	86
Bsp143I	GATC	3 cut(s)	126, 231, 375
Bsp1720I	GCTNAGC	1 cut(s)	138
BspACI	CCGC	4 cut(s)	36, 173, 836, 947
BspANI	GGCC	8 cut(s)	23, 29, 101, 293, 433, 632, 699, 856
BspCNI	CTCAG	1 cut(s)	151
BspHI	TCATGA	1 cut(s)	145
BspLI	GGNNCC	1 cut(s)	120
BspPI	GGATC	2 cut(s)	226, 383
BspT107I	GGYRCC	1 cut(s)	118
BsrI	ACTGG	3 cut(s)	513, 633, 728
BssECI	CCNNGG	3 cut(s)	24, 211, 634
BssMI	GATC	3 cut(s)	126, 231, 375
BssSI	CACGAG	1 cut(s)	839
BssT1I	CCWWGG	2 cut(s)	24, 634
Bst2BI	CACGAG	1 cut(s)	839
Bst2UI	CCWGG	1 cut(s)	696
Bst4CI	ACNGT	3 cut(s)	118, 184, 222
BstC8I	GCNNGC	2 cut(s)	21, 38
BstDEI	CTNAG	3 cut(s)	138, 411, 435
BstDSI	CCRYGG	1 cut(s)	211
BstHHI	GCGC	1 cut(s)	807
BstKTI	GATC	3 cut(s)	129, 234, 378
BstMAI	GTCTC	1 cut(s)	685
BstMBI	GATC	3 cut(s)	126, 231, 375
BstMWI	GCNNNNNNNGC	2 cut(s)	46, 176
BstNI	CCWGG	1 cut(s)	696
BstNSI	RCATGY	3 cut(s)	604, 661, 811
BstSCI	CCNGG	1 cut(s)	694
BstV1I	GCAGC	3 cut(s)	94, 182, 188
BsuRI	GGCC	8 cut(s)	23, 29, 101, 293, 433, 632, 699, 856
BtgI	CCRYGG	1 cut(s)	211
BtsIMutI	CAGTG	2 cut(s)	180, 651
Cac8I	GCNNGC	2 cut(s)	21, 38
CaiI	CAGNNNCTG	1 cut(s)	182
CciI	TCATGA	1 cut(s)	145
CfoI	GCGC	1 cut(s)	807
Cfr13I	GGNCC	3 cut(s)	100, 631, 854
Csp6I	GTAC	1 cut(s)	604
CviAII	CATG	8 cut(s)	77, 146, 257, 356, 601, 612, 658, 808
CviQI	GTAC	1 cut(s)	604
DdeI	CTNAG	3 cut(s)	138, 411, 435
DpnI	GATC	3 cut(s)	128, 233, 377
DpnII	GATC	3 cut(s)	126, 231, 375
DrdI	GACNNNNNNGTC	1 cut(s)	365
DseDI	GACNNNNNNGTC	1 cut(s)	365
EaeI	YGGCCR	1 cut(s)	27
Eco130I	CCWWGG	2 cut(s)	24, 634
Eco147I	AGGCCT	3 cut(s)	23, 293, 699
Eco57I	CTGAAG	1 cut(s)	686
Eco88I	CYCGRG	1 cut(s)	86
EcoO109I	RGGNCCY	1 cut(s)	100
EcoRII	CCWGG	1 cut(s)	694
EcoT14I	CCWWGG	2 cut(s)	24, 634
ErhI	CCWWGG	2 cut(s)	24, 634
FaeI	CATG	8 cut(s)	80, 149, 260, 359, 604, 615, 661, 811
FaqI	GGGAC	1 cut(s)	349
FatI	CATG	8 cut(s)	76, 145, 256, 355, 600, 611, 657, 807
FauI	CCCGC	1 cut(s)	29
FauNDI	CATATG	2 cut(s)	561, 910
Fnu4HI	GCNGC	4 cut(s)	83, 171, 174, 177
Fsp4HI	GCNGC	4 cut(s)	83, 171, 174, 177
FspAI	RTGCGCAY	1 cut(s)	806
FspBI	CTAG	4 cut(s)	104, 530, 635, 677
FspI	TGCGCA	1 cut(s)	806
GlaI	GCGC	1 cut(s)	806
GluI	GCNGC	4 cut(s)	83, 171, 174, 177
GsaI	CCCAGC	1 cut(s)	311
GsuI	CTGGAG	1 cut(s)	530
HaeIII	GGCC	8 cut(s)	23, 29, 101, 293, 433, 632, 699, 856
HapII	CCGG	2 cut(s)	863, 928
HhaI	GCGC	1 cut(s)	807
Hin1II	CATG	8 cut(s)	80, 149, 260, 359, 604, 615, 661, 811
Hin6I	GCGC	1 cut(s)	805
HinP1I	GCGC	1 cut(s)	805
HincII	GTYRAC	1 cut(s)	418
HindII	GTYRAC	1 cut(s)	418
HindIII	AAGCTT	1 cut(s)	781
HinfI	GANTC	1 cut(s)	111
HpaII	CCGG	2 cut(s)	863, 928
HphI	GGTGA	2 cut(s)	216, 799
Hpy166II	GTNNAC	2 cut(s)	418, 790
Hpy188I	TCNGA	2 cut(s)	396, 523
Hpy188III	TCNNGA	2 cut(s)	146, 872
Hpy8I	GTNNAC	2 cut(s)	418, 790
HpyAV	CCTTC	4 cut(s)	241, 274, 358, 710
HpyCH4III	ACNGT	3 cut(s)	118, 184, 222
HpyCH4IV	ACGT	1 cut(s)	799
HpyCH4V	TGCA	4 cut(s)	19, 244, 299, 487
HpyF10VI	GCNNNNNNNGC	2 cut(s)	46, 176
HpyF3I	CTNAG	3 cut(s)	138, 411, 435
HpySE526I	ACGT	1 cut(s)	799
Hsp92II	CATG	8 cut(s)	80, 149, 260, 359, 604, 615, 661, 811
HspAI	GCGC	1 cut(s)	805
Kzo9I	GATC	3 cut(s)	126, 231, 375
LmnI	GCTCC	4 cut(s)	276, 835, 865, 948
Lsp1109I	GCAGC	3 cut(s)	94, 182, 188
LweI	GCATC	1 cut(s)	474
MaeI	CTAG	4 cut(s)	104, 530, 635, 677
MaeII	ACGT	1 cut(s)	799
MaeIII	GTNAC	4 cut(s)	112, 222, 493, 504
MalI	GATC	3 cut(s)	128, 233, 377
MboI	GATC	3 cut(s)	126, 231, 375
MboII	GAAGA	2 cut(s)	584, 764
MfeI	CAATTG	1 cut(s)	239
MlsI	TGGCCA	1 cut(s)	29
MluCI	AATT	5 cut(s)	239, 581, 736, 748, 932
MluNI	TGGCCA	1 cut(s)	29
MlyI	GAGTC	1 cut(s)	120
Mox20I	TGGCCA	1 cut(s)	29
MscI	TGGCCA	1 cut(s)	29
MslI	CAYNNNNRTG	1 cut(s)	656
Msp20I	TGGCCA	1 cut(s)	29
MspA1I	CMGCKG	3 cut(s)	36, 173, 706
MspI	CCGG	2 cut(s)	863, 928
MspR9I	CCNGG	1 cut(s)	696
MunI	CAATTG	1 cut(s)	239
MvaI	CCWGG	1 cut(s)	696
MwoI	GCNNNNNNNGC	2 cut(s)	46, 176
NdeI	CATATG	2 cut(s)	561, 910
NdeII	GATC	3 cut(s)	126, 231, 375
NlaIII	CATG	8 cut(s)	80, 149, 260, 359, 604, 615, 661, 811
NlaIV	GGNNCC	1 cut(s)	120
NmuCI	GTSAC	2 cut(s)	112, 222
NsbI	TGCGCA	1 cut(s)	806
NspI	RCATGY	3 cut(s)	604, 661, 811
PagI	TCATGA	1 cut(s)	145
PceI	AGGCCT	3 cut(s)	23, 293, 699
PciI	ACATGT	2 cut(s)	600, 657
PcsI	WCGNNNNNNNCGW	3 cut(s)	321, 366, 375
PflMI	CCANNNNNTGG	1 cut(s)	186
PkrI	GCNGC	4 cut(s)	84, 172, 175, 178
PleI	GAGTC	1 cut(s)	119
PpsI	GAGTC	1 cut(s)	119
PscI	ACATGT	2 cut(s)	600, 657
Psp6I	CCWGG	1 cut(s)	694
PspFI	CCCAGC	1 cut(s)	307
PspGI	CCWGG	1 cut(s)	694
PspN4I	GGNNCC	1 cut(s)	120
PspPI	GGNCC	3 cut(s)	100, 631, 854
PstNI	CAGNNNCTG	1 cut(s)	182
PvuII	CAGCTG	1 cut(s)	706
RsaI	GTAC	1 cut(s)	605
RsaNI	GTAC	1 cut(s)	604
RseI	CAYNNNNRTG	1 cut(s)	656
SatI	GCNGC	4 cut(s)	83, 171, 174, 177
Sau3AI	GATC	3 cut(s)	126, 231, 375
Sau96I	GGNCC	3 cut(s)	100, 631, 854
SchI	GAGTC	1 cut(s)	120
ScrFI	CCNGG	1 cut(s)	696
SfaNI	GCATC	1 cut(s)	474
SmiMI	CAYNNNNRTG	1 cut(s)	656
Sse9I	AATT	5 cut(s)	239, 581, 736, 748, 932
SseBI	AGGCCT	3 cut(s)	23, 293, 699
SsiI	CCGC	4 cut(s)	36, 173, 836, 947
SspMI	CTAG	4 cut(s)	104, 530, 635, 677
StuI	AGGCCT	3 cut(s)	23, 293, 699
StyD4I	CCNGG	1 cut(s)	694
StyI	CCWWGG	2 cut(s)	24, 634
TaaI	ACNGT	3 cut(s)	118, 184, 222
TaiI	ACGT	1 cut(s)	802
TaqI	TCGA	4 cut(s)	67, 324, 369, 378
TasI	AATT	5 cut(s)	239, 581, 736, 748, 932
TauI	GCSGC	1 cut(s)	176
TscAI	CASTG	2 cut(s)	187, 658
TseFI	GTSAC	2 cut(s)	112, 222
TseI	GCWGC	3 cut(s)	82, 170, 176
Tsp45I	GTSAC	2 cut(s)	112, 222
TspDTI	ATGAA	3 cut(s)	438, 585, 605
TspRI	CASTG	2 cut(s)	187, 658
Van91I	CCANNNNNTGG	1 cut(s)	186
XapI	RAATTY	2 cut(s)	748, 932
XceI	RCATGY	3 cut(s)	604, 661, 811
XmaJI	CCTAGG	1 cut(s)	634
XspI	CTAG	4 cut(s)	104, 530, 635, 677

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.