Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0008121

Physical Location & Seq

Genomic Coordinates Forward (+)

39592869 .. 39596549

Gene Structure 3681 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0249900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGAGGGGTGCCGAGGGAAGAAGGCTGTGTGAGGAGTTCTCGCCTGCGTATTATGGGCTGTGCACTGCGGGTGGAATGCTGAGTGCTGGCGCTACCCATCTTGCAATCACGCCTCTCGATGTTTTGAAAGTTAATATGCAGGTCAATCCAGTTAAATATAACAGGATGGCTTCAGGGTTTTCTATTCTCTGGAGAGAACAAGGCCCTTCTTCCCTTTGGAGAGGTTGGTCTGGAAAATTGTTTGGATATGGTGTTCAGGGTGGCTGCAGATTTGGTCTATACGAATACTTTAAGAAGCTTTACTCCGATGTATTGATAAATCAGAACAGGAGTACCATATTCTTTCTCGGCAGTGCCTCTGCTCAAGTATTTGCTGATATTGCTCTCTGTCCATTTGAAGCCGTCAAAGTTCGCGTTCAAACACAGCCCAGATTTGCAAAGGGCTTGGTTGATGGGTTTCCAAAACTATATTCAACTGAAGGGCTAGCTGGCTTTTACAAAGGACTTTTACCACTTTGGGGTCGAAATCTGCCATTCTCAATGATAATGTTCACGGCATTTGAGCATTCGGTGGATCTGATTTATCACAACTTTATTCAAAAAAGAAAAGAAGATTGCTCAATTGCCCAACAGCTTGGTGTGACATGTTTAGCGGGCTATGCAGCAGGAGCTGCTGGTACCGTTGTCTCTAACCCTGCAGACAATATCGTCTCCGCTTTGTACAATAAAAAGGCCGACAGTGTGATGCAGGCTGTGAGGAACATTGGCTTTGCTAACCTATTTACTAGAAGCCTTCCTGTTCGAATTACACTTGTTGGCCCTGTTGTTACTTTGCAGTGGTTTTTCTATGACACCATTAAAGTGCTAAGTGGATTGCCACCCAGTGGAGGGCTCAGCAGACGTCTCGAAGAAGCTAACCTATCGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00941 ko01100 ko01110 map00941 map01100 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

309

Amino Acids

33.92

Weight (kDa)

9.42

Isoelectric Point (pI)

40.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	22 - 103	9.7e-19	Mitochondrial carrier protein
Mito_carr	PF00153	115 - 196	1.1e-17	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008121)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g26480
malus_domestica	MD15G1353800.v1.1
prunus_persica	Prupe.1G502300_v2.0.a1 Prupe.1G502500_v2.0.a1 Prupe.I003900_v2.0.a1 Prupe.I003900_v2.0.a1
pyrus_communis	pycom15g31720
rosa_chinensis	RchiOBHm_Chr6g0295241
rosa_laevigata	RLG00000011816
rosa_multiflora	Rmu_sc0007232.1_g000003 Rmu_sc0007232.1_g000004 Rmu_sc0010768.1_g000002
rosa_roxburghii	Rroxscaffold_171G00441440 Rroxscaffold_7G00172630 Rroxscaffold_7G00172650
rosa_rugosa	Rorug06G0249700 Rorug06G0249800.1 Rorug06G0249900
rosa_samantha	Rh6AG362800 Rh6BG370800 Rh6CG377100 Rh6DG363600
rosa_wichuraiana	Rw6G031660 Rw7G022060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	707
AatII	GACGTC	1 cut(s)	904
Acc36I	ACCTGC	1 cut(s)	130
Acc65I	GGTACC	1 cut(s)	677
AccB1I	GGYRCC	2 cut(s)	8, 677
AccB7I	CCANNNNNTGG	1 cut(s)	884
AccII	CGCG	1 cut(s)	414
AciI	CCGC	3 cut(s)	68, 653, 714
AclWI	GGATC	1 cut(s)	582
AcuI	CTGAAG	2 cut(s)	156, 498
AcyI	GRCGYC	1 cut(s)	901
AdeI	CACNNNGTG	1 cut(s)	884
AfaI	GTAC	3 cut(s)	334, 679, 722
AfiI	CCNNNNNNNGG	4 cut(s)	518, 884, 887, 888
AflIII	ACRYGT	1 cut(s)	644
AgsI	TTSAA	5 cut(s)	127, 398, 419, 474, 599
AjuI	GAANNNNNNNTTGG	2 cut(s)	454, 486
AloI	GAACNNNNNNTCC	2 cut(s)	237, 269
AluBI	AGCT	5 cut(s)	298, 488, 634, 671, 914
AluI	AGCT	5 cut(s)	298, 488, 634, 671, 914
Alw21I	GWGCWC	1 cut(s)	65
Alw26I	GTCTC	3 cut(s)	691, 715, 908
Alw44I	GTGCAC	1 cut(s)	61
AlwI	GGATC	1 cut(s)	582
AlwNI	CAGNNNCTG	1 cut(s)	671
AoxI	GGCC	3 cut(s)	202, 732, 817
ApaLI	GTGCAC	1 cut(s)	61
ApeKI	GCWGC	3 cut(s)	264, 662, 671
Asp718I	GGTACC	1 cut(s)	677
AspLEI	GCGC	1 cut(s)	92
AspS9I	GGNCC	2 cut(s)	203, 818
AsuII	TTCGAA	1 cut(s)	802
AsuNHI	GCTAGC	1 cut(s)	484
BaeGI	GKGCMC	1 cut(s)	65
BaeI	ACNNNNGTAYC	4 cut(s)	316, 349, 669, 702
BanI	GGYRCC	2 cut(s)	8, 677
BanII	GRGCYC	1 cut(s)	894
Bbv12I	GWGCWC	1 cut(s)	65
BbvI	GCAGC	3 cut(s)	251, 658, 674
BccI	CCATC	3 cut(s)	105, 160, 446
BceAI	ACGGC	2 cut(s)	386, 570
BcgI	CGANNNNNNTGC	2 cut(s)	886, 920
BcoDI	GTCTC	3 cut(s)	691, 715, 908
BfaI	CTAG	2 cut(s)	485, 786
BfmI	CTRYAG	2 cut(s)	265, 696
BfoI	RGCGCY	1 cut(s)	93
BfuAI	ACCTGC	1 cut(s)	130
BisI	GCNGC	3 cut(s)	265, 663, 672
BlpI	GCTNAGC	1 cut(s)	893
BlsI	GCNGC	3 cut(s)	266, 664, 673
BmgT120I	GGNCC	2 cut(s)	203, 818
BmiI	GGNNCC	2 cut(s)	10, 679
BmrI	ACTGGG	1 cut(s)	876
BmsI	GCATC	1 cut(s)	735
BmtI	GCTAGC	1 cut(s)	488
BmuI	ACTGGG	1 cut(s)	876
BplI	GAGNNNNNCTC	2 cut(s)	23, 55
BpmI	CTGGAG	1 cut(s)	211
Bpu1102I	GCTNAGC	1 cut(s)	893
Bpu14I	TTCGAA	1 cut(s)	802
BpuEI	CTTGAG	1 cut(s)	348
BsaHI	GRCGYC	1 cut(s)	901
BsaJI	CCNNGG	1 cut(s)	12
Bsc4I	CCNNNNNNNGG	4 cut(s)	518, 884, 887, 888
Bse1I	ACTGG	2 cut(s)	149, 882
BseDI	CCNNGG	1 cut(s)	12
BseGI	GGATG	1 cut(s)	171
BseLI	CCNNNNNNNGG	4 cut(s)	518, 884, 887, 888
BseMII	CTCAG	2 cut(s)	71, 907
BseNI	ACTGG	2 cut(s)	149, 882
BseRI	GAGGAG	1 cut(s)	47
BseSI	GKGCMC	1 cut(s)	65
BseXI	GCAGC	3 cut(s)	251, 658, 674
Bsh1236I	CGCG	1 cut(s)	414
BshFI	GGCC	3 cut(s)	204, 734, 819
BshNI	GGYRCC	2 cut(s)	8, 677
BsiHKAI	GWGCWC	1 cut(s)	65
BslI	CCNNNNNNNGG	4 cut(s)	518, 884, 887, 888
BsmAI	GTCTC	3 cut(s)	691, 715, 908
BsmBI	CGTCTC	2 cut(s)	715, 908
BsmI	GAATGC	2 cut(s)	81, 565
BsnI	GGCC	3 cut(s)	204, 734, 819
Bsp119I	TTCGAA	1 cut(s)	802
Bsp1286I	GDGCHC	2 cut(s)	65, 894
Bsp1407I	TGTACA	1 cut(s)	720
Bsp143I	GATC	1 cut(s)	574
Bsp1720I	GCTNAGC	1 cut(s)	893
BspACI	CCGC	3 cut(s)	68, 653, 714
BspANI	GGCC	3 cut(s)	204, 734, 819
BspCNI	CTCAG	2 cut(s)	72, 906
BspFNI	CGCG	1 cut(s)	414
BspLI	GGNNCC	2 cut(s)	10, 679
BspMAI	CTGCAG	2 cut(s)	269, 700
BspMI	ACCTGC	1 cut(s)	130
BspOI	GCTAGC	1 cut(s)	488
BspPI	GGATC	1 cut(s)	582
BspT104I	TTCGAA	1 cut(s)	802
BspT107I	GGYRCC	2 cut(s)	8, 677
BsrGI	TGTACA	1 cut(s)	720
BsrI	ACTGG	2 cut(s)	149, 882
BssECI	CCNNGG	1 cut(s)	12
BssMI	GATC	1 cut(s)	574
BssNI	GRCGYC	1 cut(s)	901
Bst4CI	ACNGT	2 cut(s)	682, 740
BstACI	GRCGYC	1 cut(s)	901
BstAPI	GCANNNNNTGC	1 cut(s)	671
BstAUI	TGTACA	1 cut(s)	720
BstBI	TTCGAA	1 cut(s)	802
BstC8I	GCNNGC	6 cut(s)	45, 88, 486, 490, 655, 750
BstDEI	CTNAG	3 cut(s)	80, 866, 893
BstF5I	GGATG	1 cut(s)	171
BstFNI	CGCG	1 cut(s)	414
BstH2I	RGCGCY	1 cut(s)	93
BstHHI	GCGC	1 cut(s)	92
BstKTI	GATC	1 cut(s)	577
BstMAI	GTCTC	3 cut(s)	691, 715, 908
BstMBI	GATC	1 cut(s)	574
BstMWI	GCNNNNNNNGC	4 cut(s)	380, 659, 668, 671
BstNSI	RCATGY	1 cut(s)	648
BstSFI	CTRYAG	2 cut(s)	265, 696
BstSLI	GKGCMC	1 cut(s)	65
BstUI	CGCG	1 cut(s)	414
BstV1I	GCAGC	3 cut(s)	251, 658, 674
BstX2I	RGATCY	1 cut(s)	574
BstXI	CCANNNNNNTGG	1 cut(s)	635
BstYI	RGATCY	1 cut(s)	574
BsuRI	GGCC	3 cut(s)	204, 734, 819
BtsCI	GGATG	1 cut(s)	171
BtsI	GCAGTG	3 cut(s)	63, 358, 842
BtsIMutI	CAGTG	5 cut(s)	63, 358, 745, 842, 889
BveI	ACCTGC	1 cut(s)	130
Cac8I	GCNNGC	6 cut(s)	45, 88, 486, 490, 655, 750
CaiI	CAGNNNCTG	1 cut(s)	671
CfoI	GCGC	1 cut(s)	92
Cfr13I	GGNCC	2 cut(s)	203, 818
Csp6I	GTAC	3 cut(s)	333, 678, 721
CviAII	CATG	1 cut(s)	645
CviQI	GTAC	3 cut(s)	333, 678, 721
DdeI	CTNAG	3 cut(s)	80, 866, 893
DpnI	GATC	1 cut(s)	576
DpnII	GATC	1 cut(s)	574
DraIII	CACNNNGTG	1 cut(s)	884
DrdI	GACNNNNNNGTC	1 cut(s)	707
DseDI	GACNNNNNNGTC	1 cut(s)	707
Eco24I	GRGCYC	1 cut(s)	894
Eco57I	CTGAAG	2 cut(s)	156, 498
EcoO109I	RGGNCCY	1 cut(s)	203
EcoT38I	GRGCYC	1 cut(s)	894
Esp3I	CGTCTC	2 cut(s)	715, 908
FaeI	CATG	1 cut(s)	648
FatI	CATG	1 cut(s)	644
FauI	CCCGC	2 cut(s)	61, 646
Fnu4HI	GCNGC	3 cut(s)	265, 663, 672
FokI	GGATG	1 cut(s)	178
FriOI	GRGCYC	1 cut(s)	894
Fsp4HI	GCNGC	3 cut(s)	265, 663, 672
FspBI	CTAG	2 cut(s)	485, 786
GlaI	GCGC	1 cut(s)	91
GluI	GCNGC	3 cut(s)	265, 663, 672
GsuI	CTGGAG	1 cut(s)	211
HaeII	RGCGCY	1 cut(s)	93
HaeIII	GGCC	3 cut(s)	204, 734, 819
HhaI	GCGC	1 cut(s)	92
Hin1I	GRCGYC	1 cut(s)	901
Hin1II	CATG	1 cut(s)	648
Hin6I	GCGC	1 cut(s)	90
HinP1I	GCGC	1 cut(s)	90
HindIII	AAGCTT	1 cut(s)	296
Hpy166II	GTNNAC	2 cut(s)	63, 552
Hpy188I	TCNGA	3 cut(s)	307, 324, 579
Hpy188III	TCNNGA	4 cut(s)	116, 190, 231, 905
Hpy8I	GTNNAC	2 cut(s)	63, 552
HpyAV	CCTTC	4 cut(s)	15, 216, 473, 803
HpyCH4III	ACNGT	2 cut(s)	682, 740
HpyCH4IV	ACGT	1 cut(s)	901
HpyCH4V	TGCA	9 cut(s)	63, 104, 139, 267, 437, 662, 698, 748, 835
HpyF10VI	GCNNNNNNNGC	4 cut(s)	380, 659, 668, 671
HpyF3I	CTNAG	3 cut(s)	80, 866, 893
HpySE526I	ACGT	1 cut(s)	901
Hsp92I	GRCGYC	1 cut(s)	901
Hsp92II	CATG	1 cut(s)	648
HspAI	GCGC	1 cut(s)	90
KpnI	GGTACC	1 cut(s)	681
Kzo9I	GATC	1 cut(s)	574
LmnI	GCTCC	1 cut(s)	668
Lsp1109I	GCAGC	3 cut(s)	251, 658, 674
LweI	GCATC	1 cut(s)	735
MaeI	CTAG	2 cut(s)	485, 786
MaeII	ACGT	1 cut(s)	901
MaeIII	GTNAC	2 cut(s)	640, 826
MalI	GATC	1 cut(s)	576
MboI	GATC	1 cut(s)	574
MboII	GAAGA	4 cut(s)	30, 201, 623, 920
MfeI	CAATTG	1 cut(s)	621
MflI	RGATCY	1 cut(s)	574
MhlI	GDGCHC	2 cut(s)	65, 894
MluCI	AATT	3 cut(s)	236, 621, 804
MnlI	CCTC	7 cut(s)	7, 25, 123, 215, 367, 750, 881
MseI	TTAA	5 cut(s)	132, 153, 291, 858, 928
MslI	CAYNNNNRTG	1 cut(s)	860
MunI	CAATTG	1 cut(s)	621
Mva1269I	GAATGC	2 cut(s)	81, 565
MvnI	CGCG	1 cut(s)	414
MwoI	GCNNNNNNNGC	4 cut(s)	380, 659, 668, 671
NdeII	GATC	1 cut(s)	574
NheI	GCTAGC	1 cut(s)	484
NlaIII	CATG	1 cut(s)	648
NlaIV	GGNNCC	2 cut(s)	10, 679
NmeAIII	GCCGAG	2 cut(s)	37, 327
NmuCI	GTSAC	1 cut(s)	640
NspI	RCATGY	1 cut(s)	648
NspV	TTCGAA	1 cut(s)	802
PciI	ACATGT	1 cut(s)	644
PctI	GAATGC	2 cut(s)	81, 565
PflMI	CCANNNNNTGG	1 cut(s)	884
PkrI	GCNGC	3 cut(s)	266, 664, 673
PscI	ACATGT	1 cut(s)	644
PspN4I	GGNNCC	2 cut(s)	10, 679
PspPI	GGNCC	2 cut(s)	203, 818
PstI	CTGCAG	2 cut(s)	269, 700
PstNI	CAGNNNCTG	1 cut(s)	671
PsuI	RGATCY	1 cut(s)	574
RsaI	GTAC	3 cut(s)	334, 679, 722
RsaNI	GTAC	3 cut(s)	333, 678, 721
RseI	CAYNNNNRTG	1 cut(s)	860
SaqAI	TTAA	5 cut(s)	132, 153, 291, 858, 928
SatI	GCNGC	3 cut(s)	265, 663, 672
Sau3AI	GATC	1 cut(s)	574
Sau96I	GGNCC	2 cut(s)	203, 818
SduI	GDGCHC	2 cut(s)	65, 894
SfaNI	GCATC	1 cut(s)	735
SfcI	CTRYAG	2 cut(s)	265, 696
SfuI	TTCGAA	1 cut(s)	802
SmiMI	CAYNNNNRTG	1 cut(s)	860
SmlI	CTYRAG	1 cut(s)	363
SmoI	CTYRAG	1 cut(s)	363
Sse9I	AATT	3 cut(s)	236, 621, 804
SsiI	CCGC	3 cut(s)	68, 653, 714
SspMI	CTAG	2 cut(s)	485, 786
TaaI	ACNGT	2 cut(s)	682, 740
TaiI	ACGT	1 cut(s)	904
TaqI	TCGA	4 cut(s)	117, 523, 802, 906
TasI	AATT	3 cut(s)	236, 621, 804
TatI	WGTACW	1 cut(s)	720
Tru1I	TTAA	5 cut(s)	132, 153, 291, 858, 928
Tru9I	TTAA	5 cut(s)	132, 153, 291, 858, 928
TscAI	CASTG	5 cut(s)	70, 358, 745, 842, 889
TseFI	GTSAC	1 cut(s)	640
TseI	GCWGC	3 cut(s)	264, 662, 671
Tsp45I	GTSAC	1 cut(s)	640
TspRI	CASTG	5 cut(s)	70, 358, 745, 842, 889
Van91I	CCANNNNNTGG	1 cut(s)	884
VneI	GTGCAC	1 cut(s)	61
XceI	RCATGY	1 cut(s)	648
XspI	CTAG	2 cut(s)	485, 786
ZraI	GACGTC	1 cut(s)	902

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.