Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0008121

Physical Location & Seq

Genomic Coordinates Forward (+)

42426470 .. 42429601

Gene Structure 3132 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1353800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGGGGAAACGGAGGTGGAGAGAGTGCAGGCACTGGCTTTGGGCGGGTTGAACCAACTTCCGGCCAAGTTTGTTCGCCCCGCTCATGAGCAGCCTGAGAACAGCAAAGCCTTAGAGGGGGTCTCAGTGCCTGTTATCTCCCTAGCTCAGCCTCATGATGTTGTTGTGAAGAGGATGGCGGAGGCAGCCACCGAATGGGGTTTTTTTCTCATCACTGACCATGGCATACCATCGTCTTTGATCCAACGGTTGCAAAAAGTTGGTCAGGAGTTCTTCCTTCTCCCACAGGAGGAAAAGGAGGCTTATGCGAACGACCCTGCTAGTGGGAAGTTTGATGGATATGGCACTAAAATGACAAAGAACCATGACGAGAAGGTCGAATGGATCGACTATTTCTTCCATCTTACTGCGCCTCCATCAAAGGTCAACTATGAAATCTGGCCTAAGAACCCTCCATCTTACAGGGAAGTGAATGACGAATATAACAAGGAAATGCTAAGAGTGACAGACAAGTTACTGGAGGTGCTTTCAGAAGGTCTAGGGCTGGAAAGCAAGGTTCTGAAATCCCATGTGGGAGGTGAAGAAGTGGAACTGGAAATGAAAATCAACATGTACCCACCATGCCCTCAGCCCCAACTAGCCCTTGGAGTTGAGCCTCACACTGACATGTCAGCCCTAACCCTACTCGTCTCGAACGATGTTCCCGGCCTTCAGCTGTGGAAGGATGACAACTGGGTTGCTGTAGACTACCTGCCAAATGCGGTTTTTGTTCACATTGGTGATCAGATGGAGGTCTTGAGCAATGGCAAGTACAAGAGTGTTCTTCACAGAAGTTTGGTGAATAAGGAACGTACGCGCATGTCGTGGGCCGTGTTCATTGCTCCTCCACATGAGGCTGTGATCGGGCCTCTACAGGAGCTCTTGGATGAGCAAAATCCTGCCAAGTACTCGACCAAAACGTACGCCGAATACCGACACCGAAAGTTCAACAAGCTCCCACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00941 ko01100 ko01110 map00941 map01100 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

335

Amino Acids

37.83

Weight (kDa)

5.45

Isoelectric Point (pI)

43.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	43 - 150	3e-25	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	200 - 295	7.3e-32	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008121)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g26480
malus_domestica	MD15G1353800.v1.1
prunus_persica	Prupe.1G502300_v2.0.a1 Prupe.1G502500_v2.0.a1 Prupe.I003900_v2.0.a1 Prupe.I003900_v2.0.a1
pyrus_communis	pycom15g31720
rosa_chinensis	RchiOBHm_Chr6g0295241
rosa_laevigata	RLG00000011816
rosa_multiflora	Rmu_sc0007232.1_g000003 Rmu_sc0007232.1_g000004 Rmu_sc0010768.1_g000002
rosa_roxburghii	Rroxscaffold_171G00441440 Rroxscaffold_7G00172630 Rroxscaffold_7G00172650
rosa_rugosa	Rorug06G0249700 Rorug06G0249800.1 Rorug06G0249900
rosa_samantha	Rh6AG362800 Rh6BG370800 Rh6CG377100 Rh6DG363600
rosa_wichuraiana	Rw6G031660 Rw7G022060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	374
Acc36I	ACCTGC	1 cut(s)	759
AccB7I	CCANNNNNTGG	1 cut(s)	195
AccBSI	CCGCTC	1 cut(s)	83
AccI	GTMKAC	1 cut(s)	744
AccII	CGCG	1 cut(s)	856
AciI	CCGC	4 cut(s)	45, 81, 179, 761
AclWI	GGATC	2 cut(s)	235, 392
AcoI	YGGCCR	1 cut(s)	63
AcuI	CTGAAG	1 cut(s)	695
AfaI	GTAC	5 cut(s)	614, 812, 853, 947, 962
AfiI	CCNNNNNNNGG	5 cut(s)	61, 117, 195, 289, 323
AflIII	ACRYGT	2 cut(s)	609, 666
AgsI	TTSAA	2 cut(s)	52, 988
AleI	CACNNNNGTG	1 cut(s)	777
AluBI	AGCT	4 cut(s)	146, 715, 919, 994
AluI	AGCT	4 cut(s)	146, 715, 919, 994
Alw21I	GWGCWC	1 cut(s)	921
Alw26I	GTCTC	2 cut(s)	127, 694
AlwI	GGATC	2 cut(s)	235, 392
AlwNI	CAGNNNCTG	2 cut(s)	34, 131
AoxI	GGCC	5 cut(s)	63, 440, 706, 867, 905
ApeKI	GCWGC	2 cut(s)	91, 185
ArsI	GACNNNNNNTTYG	2 cut(s)	247, 279
AspLEI	GCGC	2 cut(s)	412, 858
AspS9I	GGNCC	2 cut(s)	867, 905
AsuC2I	CCSGG	1 cut(s)	705
AsuHPI	GGTGA	3 cut(s)	590, 791, 850
BanII	GRGCYC	1 cut(s)	921
Bbv12I	GWGCWC	1 cut(s)	921
BbvCI	CCTCAGC	1 cut(s)	627
BbvI	GCAGC	2 cut(s)	103, 197
BccI	CCATC	7 cut(s)	169, 238, 329, 408, 424, 463, 781
BceAI	ACGGC	1 cut(s)	854
BclI	TGATCA	1 cut(s)	781
BcnI	CCSGG	1 cut(s)	705
BcoDI	GTCTC	2 cut(s)	127, 694
BfaI	CTAG	4 cut(s)	143, 321, 539, 638
BfmI	CTRYAG	2 cut(s)	741, 911
BfuAI	ACCTGC	1 cut(s)	759
BisI	GCNGC	2 cut(s)	92, 186
BlpI	GCTNAGC	1 cut(s)	147
BlsI	GCNGC	2 cut(s)	93, 187
BmcAI	AGTACT	1 cut(s)	947
Bme1390I	CCNGG	1 cut(s)	705
BmgT120I	GGNCC	2 cut(s)	867, 905
BmrFI	CCNGG	1 cut(s)	705
BmrI	ACTGGG	1 cut(s)	742
BmuI	ACTGGG	1 cut(s)	742
BplI	GAGNNNNNCTC	2 cut(s)	107, 139
BpmI	CTGGAG	1 cut(s)	539
Bpu10I	CCTNAGC	1 cut(s)	627
Bpu1102I	GCTNAGC	1 cut(s)	147
BpuEI	CTTGAG	1 cut(s)	817
BpuMI	CCSGG	1 cut(s)	705
BsaI	GGTCTC	1 cut(s)	127
BsaJI	CCNNGG	2 cut(s)	220, 643
BsaXI	ACNNNNNCTCC	2 cut(s)	397, 427
Bsc4I	CCNNNNNNNGG	5 cut(s)	61, 117, 195, 289, 323
Bse1I	ACTGG	4 cut(s)	39, 522, 597, 737
Bse3DI	GCAATG	2 cut(s)	808, 876
BseDI	CCNNGG	2 cut(s)	220, 643
BseGI	GGATG	3 cut(s)	180, 730, 931
BseLI	CCNNNNNNNGG	5 cut(s)	61, 117, 195, 289, 323
BseMI	GCAATG	2 cut(s)	808, 876
BseMII	CTCAG	4 cut(s)	87, 138, 161, 641
BseNI	ACTGG	4 cut(s)	39, 522, 597, 737
BseRI	GAGGAG	1 cut(s)	873
BseXI	GCAGC	2 cut(s)	103, 197
BsgI	GTGCAG	1 cut(s)	47
Bsh1236I	CGCG	1 cut(s)	856
BshFI	GGCC	5 cut(s)	65, 442, 708, 869, 907
BsiHKAI	GWGCWC	1 cut(s)	921
BsiSI	CCGG	2 cut(s)	62, 705
BsiWI	CGTACG	2 cut(s)	851, 960
BslI	CCNNNNNNNGG	5 cut(s)	61, 117, 195, 289, 323
BsmAI	GTCTC	2 cut(s)	127, 694
BsmBI	CGTCTC	1 cut(s)	694
BsnI	GGCC	5 cut(s)	65, 442, 708, 869, 907
Bso31I	GGTCTC	1 cut(s)	127
Bsp1286I	GDGCHC	1 cut(s)	921
Bsp143I	GATC	4 cut(s)	240, 384, 781, 900
Bsp1720I	GCTNAGC	1 cut(s)	147
Bsp19I	CCATGG	1 cut(s)	220
BspACI	CCGC	4 cut(s)	45, 81, 179, 761
BspANI	GGCC	5 cut(s)	65, 442, 708, 869, 907
BspCNI	CTCAG	4 cut(s)	88, 137, 160, 640
BspFNI	CGCG	1 cut(s)	856
BspHI	TCATGA	2 cut(s)	85, 154
BspMI	ACCTGC	1 cut(s)	759
BspPI	GGATC	2 cut(s)	235, 392
BspTNI	GGTCTC	1 cut(s)	127
BsrBI	CCGCTC	1 cut(s)	83
BsrDI	GCAATG	2 cut(s)	808, 876
BsrI	ACTGG	4 cut(s)	39, 522, 597, 737
BssECI	CCNNGG	2 cut(s)	220, 643
BssMI	GATC	4 cut(s)	240, 384, 781, 900
BssT1I	CCWWGG	2 cut(s)	220, 643
Bst4CI	ACNGT	2 cut(s)	249, 1002
Bst6I	CTCTTC	1 cut(s)	164
BstC8I	GCNNGC	1 cut(s)	30
BstDEI	CTNAG	7 cut(s)	96, 112, 124, 147, 444, 497, 627
BstDSI	CCRYGG	1 cut(s)	220
BstF5I	GGATG	3 cut(s)	180, 730, 931
BstFNI	CGCG	1 cut(s)	856
BstHHI	GCGC	2 cut(s)	412, 858
BstKTI	GATC	4 cut(s)	243, 387, 784, 903
BstMAI	GTCTC	2 cut(s)	127, 694
BstMBI	GATC	4 cut(s)	240, 384, 781, 900
BstMWI	GCNNNNNNNGC	1 cut(s)	185
BstNSI	RCATGY	3 cut(s)	613, 670, 862
BstSCI	CCNGG	1 cut(s)	703
BstSFI	CTRYAG	2 cut(s)	741, 911
BstUI	CGCG	1 cut(s)	856
BstV1I	GCAGC	2 cut(s)	103, 197
BsuRI	GGCC	5 cut(s)	65, 442, 708, 869, 907
BtgI	CCRYGG	1 cut(s)	220
BtsCI	GGATG	3 cut(s)	180, 730, 931
BtsIMutI	CAGTG	4 cut(s)	32, 132, 213, 660
BveI	ACCTGC	1 cut(s)	759
Cac8I	GCNNGC	1 cut(s)	30
CaiI	CAGNNNCTG	2 cut(s)	34, 131
CciI	TCATGA	2 cut(s)	85, 154
CfoI	GCGC	2 cut(s)	412, 858
Cfr13I	GGNCC	2 cut(s)	867, 905
Csp6I	GTAC	5 cut(s)	613, 811, 852, 946, 961
CviQI	GTAC	5 cut(s)	613, 811, 852, 946, 961
DdeI	CTNAG	7 cut(s)	96, 112, 124, 147, 444, 497, 627
DpnI	GATC	4 cut(s)	242, 386, 783, 902
DpnII	GATC	4 cut(s)	240, 384, 781, 900
DrdI	GACNNNNNNGTC	1 cut(s)	374
DseDI	GACNNNNNNGTC	1 cut(s)	374
EaeI	YGGCCR	1 cut(s)	63
Eam1104I	CTCTTC	1 cut(s)	164
EarI	CTCTTC	1 cut(s)	164
EciI	GGCGGA	1 cut(s)	194
Ecl136II	GAGCTC	1 cut(s)	919
Eco130I	CCWWGG	2 cut(s)	220, 643
Eco24I	GRGCYC	1 cut(s)	921
Eco31I	GGTCTC	1 cut(s)	127
Eco53kI	GAGCTC	1 cut(s)	919
Eco57I	CTGAAG	1 cut(s)	695
EcoICRI	GAGCTC	1 cut(s)	919
EcoT14I	CCWWGG	2 cut(s)	220, 643
EcoT38I	GRGCYC	1 cut(s)	921
ErhI	CCWWGG	2 cut(s)	220, 643
Esp3I	CGTCTC	1 cut(s)	694
FauI	CCCGC	2 cut(s)	38, 88
FbaI	TGATCA	1 cut(s)	781
FblI	GTMKAC	1 cut(s)	744
Fnu4HI	GCNGC	2 cut(s)	92, 186
FokI	GGATG	3 cut(s)	187, 737, 938
FriOI	GRGCYC	1 cut(s)	921
Fsp4HI	GCNGC	2 cut(s)	92, 186
FspBI	CTAG	4 cut(s)	143, 321, 539, 638
GlaI	GCGC	2 cut(s)	411, 857
GluI	GCNGC	2 cut(s)	92, 186
GsuI	CTGGAG	1 cut(s)	539
HaeIII	GGCC	5 cut(s)	65, 442, 708, 869, 907
HapII	CCGG	2 cut(s)	62, 705
HhaI	GCGC	2 cut(s)	412, 858
Hin6I	GCGC	2 cut(s)	410, 856
HinP1I	GCGC	2 cut(s)	410, 856
HincII	GTYRAC	1 cut(s)	427
HindII	GTYRAC	1 cut(s)	427
HpaII	CCGG	2 cut(s)	62, 705
HphI	GGTGA	3 cut(s)	590, 791, 850
Hpy166II	GTNNAC	3 cut(s)	427, 745, 772
Hpy188I	TCNGA	3 cut(s)	532, 561, 786
Hpy188III	TCNNGA	5 cut(s)	86, 155, 266, 691, 796
Hpy8I	GTNNAC	3 cut(s)	427, 745, 772
HpyAV	CCTTC	5 cut(s)	287, 367, 527, 715, 719
HpyCH4III	ACNGT	2 cut(s)	249, 1002
HpyCH4IV	ACGT	2 cut(s)	850, 959
HpyCH4V	TGCA	2 cut(s)	28, 253
HpyF10VI	GCNNNNNNNGC	1 cut(s)	185
HpyF3I	CTNAG	7 cut(s)	96, 112, 124, 147, 444, 497, 627
HpySE526I	ACGT	2 cut(s)	850, 959
HspAI	GCGC	2 cut(s)	410, 856
Ksp22I	TGATCA	1 cut(s)	781
Kzo9I	GATC	4 cut(s)	240, 384, 781, 900
LmnI	GCTCC	3 cut(s)	886, 916, 999
Lsp1109I	GCAGC	2 cut(s)	103, 197
MaeI	CTAG	4 cut(s)	143, 321, 539, 638
MaeII	ACGT	2 cut(s)	850, 959
MaeIII	GTNAC	2 cut(s)	502, 513
MalI	GATC	4 cut(s)	242, 386, 783, 902
MbiI	CCGCTC	1 cut(s)	83
MboI	GATC	4 cut(s)	240, 384, 781, 900
MboII	GAAGA	5 cut(s)	181, 265, 388, 593, 815
MhlI	GDGCHC	1 cut(s)	921
MmeI	TCCRAC	1 cut(s)	268
MslI	CAYNNNNRTG	3 cut(s)	350, 665, 777
MspA1I	CMGCKG	1 cut(s)	715
MspI	CCGG	2 cut(s)	62, 705
MspR9I	CCNGG	1 cut(s)	705
MvnI	CGCG	1 cut(s)	856
MwoI	GCNNNNNNNGC	1 cut(s)	185
NciI	CCSGG	1 cut(s)	705
NcoI	CCATGG	1 cut(s)	220
NdeII	GATC	4 cut(s)	240, 384, 781, 900
NmuCI	GTSAC	1 cut(s)	502
NspI	RCATGY	3 cut(s)	613, 670, 862
OliI	CACNNNNGTG	1 cut(s)	777
PagI	TCATGA	2 cut(s)	85, 154
PciI	ACATGT	2 cut(s)	609, 666
PcsI	WCGNNNNNNNCGW	5 cut(s)	375, 384, 693, 860, 956
Pfl23II	CGTACG	2 cut(s)	851, 960
PflMI	CCANNNNNTGG	1 cut(s)	195
PkrI	GCNGC	2 cut(s)	93, 187
PscI	ACATGT	2 cut(s)	609, 666
Psp124BI	GAGCTC	1 cut(s)	921
PspLI	CGTACG	2 cut(s)	851, 960
PspPI	GGNCC	2 cut(s)	867, 905
PstNI	CAGNNNCTG	2 cut(s)	34, 131
PvuII	CAGCTG	1 cut(s)	715
RsaI	GTAC	5 cut(s)	614, 812, 853, 947, 962
RsaNI	GTAC	5 cut(s)	613, 811, 852, 946, 961
RseI	CAYNNNNRTG	3 cut(s)	350, 665, 777
SacI	GAGCTC	1 cut(s)	921
SatI	GCNGC	2 cut(s)	92, 186
Sau3AI	GATC	4 cut(s)	240, 384, 781, 900
Sau96I	GGNCC	2 cut(s)	867, 905
ScaI	AGTACT	1 cut(s)	947
ScrFI	CCNGG	1 cut(s)	705
SduI	GDGCHC	1 cut(s)	921
SfcI	CTRYAG	2 cut(s)	741, 911
SmiMI	CAYNNNNRTG	3 cut(s)	350, 665, 777
SmlI	CTYRAG	1 cut(s)	796
SmoI	CTYRAG	1 cut(s)	796
SsiI	CCGC	4 cut(s)	45, 81, 179, 761
SspMI	CTAG	4 cut(s)	143, 321, 539, 638
SstI	GAGCTC	1 cut(s)	921
StyD4I	CCNGG	1 cut(s)	703
StyI	CCWWGG	2 cut(s)	220, 643
TaaI	ACNGT	2 cut(s)	249, 1002
TaiI	ACGT	2 cut(s)	853, 962
TaqI	TCGA	4 cut(s)	378, 387, 692, 950
TatI	WGTACW	2 cut(s)	810, 945
TscAI	CASTG	4 cut(s)	39, 132, 220, 667
TseFI	GTSAC	1 cut(s)	502
TseI	GCWGC	2 cut(s)	91, 185
Tsp45I	GTSAC	1 cut(s)	502
TspDTI	ATGAA	3 cut(s)	447, 614, 865
TspGWI	ACGGA	1 cut(s)	26
TspRI	CASTG	4 cut(s)	39, 132, 220, 667
Van91I	CCANNNNNTGG	1 cut(s)	195
XceI	RCATGY	3 cut(s)	613, 670, 862
XcmI	CCANNNNNNNNNTGG	1 cut(s)	641
XmiI	GTMKAC	1 cut(s)	744
XspI	CTAG	4 cut(s)	143, 321, 539, 638
ZrmI	AGTACT	1 cut(s)	947

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.