Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0008121

Physical Location & Seq

Genomic Coordinates Reverse (-)

25840217 .. 25853934

Gene Structure 13718 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G022060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGACGTAGAGAGAGTCCAAGCCTTGGCCTTGAGTGGGCTCAACGAGCTCCCAGCGAAGTTCATCCGCCCGACTCATGAGCAACCCGAGAACAGCAAGGCCTTGGAGGGAGTCACCGTGCCGGTGATCTCCCTGGCTAAACCACATGACATTGTCGTGAAGGAAGTGGCTGAGGCAGCCTCCGAGTGGGGCTTCTTTCTCATCACTGACCATGGCATACCGGCTTCTTTGATAGAGCAGTTACAGAAGGTGGGCAAAGAGTTCTTTATGCTGCCACAGGAGGAAAAAGAGGCTTATGCGAATGACCCTTGGATTGACTATTTCTTTCACGTCACTGCTCCTCCATATAAGGTTAACTATGAAATTTGGCCTAGGAATCCTCCATCATACAGGTACCATTTAACCATATACATATATAACAACACATACGGGGAAGTAAATGAAGAATATAATAGGGAAATGCTGAGGGTAACAGACAAGCTACTGGAGTTGCTTTCTGAGAGTCTAAGCCTGGACAAGCAGGTACTAAAATCACATGTCGGAGGTGACAAAATAGAGCTGGAAATGAAGATAAACATGTACCCGCCATGCCCACAGCCGCAACTGGCTCTCGGAGTTGAGCCTCACACAGACATGTCGGCCCTCACCTTGCTGGTTTCGAATGATGTTCCTGGTCTTCAGCTGTGGAAAGATGGCAACTGGGTTTCAGTAAATTACCTAACCAAGACAGGCGCAATCTTCGTTCACATTGGTGATCAGATGGAGGTGTTGAGCAATGGCAAGTACAAGAGTGTTCTTCACAGGAGCTTGGTGAACAAGGAACGGTTGCGCATGTCGTGGGCTGTGTTCGTTGCACCGCCGCATGAGGCGGTCATTGGGCCTCTGCCAGAGCTTTTGGATGAACAAAACCCTGCCAAATACTCTACCAAAACATATGCTGAATACCGACACCGCAAATTCAACAAAATCCCACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00941 ko01100 ko01110 map00941 map01100 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

325

Amino Acids

37.17

Weight (kDa)

5.7

Isoelectric Point (pI)

38.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	40 - 104	2.7e-18	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	189 - 286	4e-29	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008121)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g26480
malus_domestica	MD15G1353800.v1.1
prunus_persica	Prupe.1G502300_v2.0.a1 Prupe.1G502500_v2.0.a1 Prupe.I003900_v2.0.a1 Prupe.I003900_v2.0.a1
pyrus_communis	pycom15g31720
rosa_chinensis	RchiOBHm_Chr6g0295241
rosa_laevigata	RLG00000011816
rosa_multiflora	Rmu_sc0007232.1_g000003 Rmu_sc0007232.1_g000004 Rmu_sc0010768.1_g000002
rosa_roxburghii	Rroxscaffold_171G00441440 Rroxscaffold_7G00172630 Rroxscaffold_7G00172650
rosa_rugosa	Rorug06G0249700 Rorug06G0249800.1 Rorug06G0249900
rosa_samantha	Rh6AG362800 Rh6BG370800 Rh6CG377100 Rh6DG363600
rosa_wichuraiana	Rw6G031660 Rw7G022060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	830
Acc36I	ACCTGC	1 cut(s)	511
Acc65I	GGTACC	1 cut(s)	393
AccB1I	GGYRCC	1 cut(s)	393
AccB7I	CCANNNNNTGG	1 cut(s)	25
AciI	CCGC	7 cut(s)	67, 584, 599, 857, 860, 869, 952
AcsI	RAATTY	2 cut(s)	363, 956
AcuI	CTGAAG	1 cut(s)	662
AfaI	GTAC	4 cut(s)	395, 525, 581, 785
AfiI	CCNNNNNNNGG	3 cut(s)	25, 36, 186
AflIII	ACRYGT	3 cut(s)	535, 576, 633
AgsI	TTSAA	1 cut(s)	961
AjiI	CACGTC	1 cut(s)	331
AjnI	CCWGG	3 cut(s)	132, 510, 670
AleI	CACNNNNGTG	1 cut(s)	750
AluBI	AGCT	6 cut(s)	49, 481, 559, 682, 807, 892
AluI	AGCT	6 cut(s)	49, 481, 559, 682, 807, 892
Alw21I	GWGCWC	1 cut(s)	51
Ama87I	CYCGRG	1 cut(s)	86
AoxI	GGCC	5 cut(s)	27, 99, 368, 639, 878
ApeKI	GCWGC	2 cut(s)	176, 271
ApoI	RAATTY	2 cut(s)	363, 956
Asp718I	GGTACC	1 cut(s)	393
AspA2I	CCTAGG	1 cut(s)	371
AspLEI	GCGC	2 cut(s)	734, 831
AspS9I	GGNCC	2 cut(s)	640, 878
AsuHPI	GGTGA	6 cut(s)	106, 136, 557, 637, 764, 823
AsuII	TTCGAA	1 cut(s)	659
AvaI	CYCGRG	1 cut(s)	86
AvrII	CCTAGG	1 cut(s)	371
BanI	GGYRCC	1 cut(s)	393
BanII	GRGCYC	2 cut(s)	42, 51
BbsI	GAAGAC	1 cut(s)	668
Bbv12I	GWGCWC	1 cut(s)	51
BbvCI	CCTCAGC	2 cut(s)	171, 464
BbvI	GCAGC	2 cut(s)	188, 258
BccI	CCATC	3 cut(s)	391, 686, 754
BciT130I	CCWGG	3 cut(s)	134, 512, 672
BclI	TGATCA	1 cut(s)	754
BfaI	CTAG	1 cut(s)	372
BfuAI	ACCTGC	1 cut(s)	511
BisI	GCNGC	4 cut(s)	177, 272, 599, 860
BlnI	CCTAGG	1 cut(s)	371
BlsI	GCNGC	4 cut(s)	178, 273, 600, 861
Bme1390I	CCNGG	3 cut(s)	134, 512, 672
BmeT110I	CYCGRG	1 cut(s)	86
BmgBI	CACGTC	1 cut(s)	331
BmgT120I	GGNCC	2 cut(s)	640, 878
BmiI	GGNNCC	1 cut(s)	395
BmrFI	CCNGG	3 cut(s)	134, 512, 672
BmrI	ACTGGG	1 cut(s)	709
BmuI	ACTGGG	1 cut(s)	709
BpiI	GAAGAC	1 cut(s)	668
BplI	GAGNNNNNCTC	2 cut(s)	164, 196
BpmI	CTGGAG	1 cut(s)	506
Bpu10I	CCTNAGC	2 cut(s)	171, 464
Bpu14I	TTCGAA	1 cut(s)	659
BpuEI	CTTGAG	1 cut(s)	52
BsaJI	CCNNGG	6 cut(s)	24, 102, 132, 211, 308, 371
BsaXI	ACNNNNNCTCC	4 cut(s)	102, 132, 325, 355
Bsc4I	CCNNNNNNNGG	3 cut(s)	25, 36, 186
Bse118I	RCCGGY	2 cut(s)	121, 220
Bse1I	ACTGG	3 cut(s)	489, 609, 704
Bse3DI	GCAATG	1 cut(s)	781
BseBI	CCWGG	3 cut(s)	134, 512, 672
BseDI	CCNNGG	6 cut(s)	24, 102, 132, 211, 308, 371
BseGI	GGATG	2 cut(s)	63, 904
BseLI	CCNNNNNNNGG	3 cut(s)	25, 36, 186
BseMI	GCAATG	1 cut(s)	781
BseMII	CTCAG	3 cut(s)	162, 455, 489
BseNI	ACTGG	3 cut(s)	489, 609, 704
BseRI	GAGGAG	1 cut(s)	330
BseXI	GCAGC	2 cut(s)	188, 258
BseYI	CCCAGC	1 cut(s)	52
BshFI	GGCC	5 cut(s)	29, 101, 370, 641, 880
BshNI	GGYRCC	1 cut(s)	393
BsiHKAI	GWGCWC	1 cut(s)	51
BsiHKCI	CYCGRG	1 cut(s)	86
BsiSI	CCGG	2 cut(s)	122, 221
BslI	CCNNNNNNNGG	3 cut(s)	25, 36, 186
BsnI	GGCC	5 cut(s)	29, 101, 370, 641, 880
BsoBI	CYCGRG	1 cut(s)	86
Bsp119I	TTCGAA	1 cut(s)	659
Bsp1286I	GDGCHC	2 cut(s)	42, 51
Bsp143I	GATC	2 cut(s)	126, 754
Bsp19I	CCATGG	1 cut(s)	211
BspACI	CCGC	7 cut(s)	67, 584, 599, 857, 860, 869, 952
BspANI	GGCC	5 cut(s)	29, 101, 370, 641, 880
BspCNI	CTCAG	3 cut(s)	163, 456, 490
BspHI	TCATGA	1 cut(s)	76
BspLI	GGNNCC	1 cut(s)	395
BspMI	ACCTGC	1 cut(s)	511
BspT104I	TTCGAA	1 cut(s)	659
BspT107I	GGYRCC	1 cut(s)	393
BsrDI	GCAATG	1 cut(s)	781
BsrFI	RCCGGY	2 cut(s)	121, 220
BsrI	ACTGG	3 cut(s)	489, 609, 704
BssAI	RCCGGY	2 cut(s)	121, 220
BssECI	CCNNGG	6 cut(s)	24, 102, 132, 211, 308, 371
BssMI	GATC	2 cut(s)	126, 754
BssT1I	CCWWGG	5 cut(s)	24, 102, 211, 308, 371
Bst2UI	CCWGG	3 cut(s)	134, 512, 672
Bst4CI	ACNGT	3 cut(s)	118, 825, 975
BstBI	TTCGAA	1 cut(s)	659
BstDEI	CTNAG	4 cut(s)	171, 464, 498, 506
BstDSI	CCRYGG	1 cut(s)	211
BstF5I	GGATG	2 cut(s)	63, 904
BstHHI	GCGC	2 cut(s)	734, 831
BstKTI	GATC	2 cut(s)	129, 757
BstMBI	GATC	2 cut(s)	126, 754
BstMWI	GCNNNNNNNGC	2 cut(s)	46, 176
BstNI	CCWGG	3 cut(s)	134, 512, 672
BstNSI	RCATGY	4 cut(s)	539, 580, 637, 835
BstSCI	CCNGG	3 cut(s)	132, 510, 670
BstV1I	GCAGC	2 cut(s)	188, 258
BstV2I	GAAGAC	1 cut(s)	668
BsuRI	GGCC	5 cut(s)	29, 101, 370, 641, 880
BtgI	CCRYGG	1 cut(s)	211
BtrI	CACGTC	1 cut(s)	331
BtsCI	GGATG	2 cut(s)	63, 904
BtsI	GCAGTG	1 cut(s)	333
BtsIMutI	CAGTG	2 cut(s)	204, 333
BveI	ACCTGC	1 cut(s)	511
CciI	TCATGA	1 cut(s)	76
CfoI	GCGC	2 cut(s)	734, 831
Cfr10I	RCCGGY	2 cut(s)	121, 220
Cfr13I	GGNCC	2 cut(s)	640, 878
Csp6I	GTAC	4 cut(s)	394, 524, 580, 784
CviAII	CATG	9 cut(s)	77, 146, 212, 536, 577, 588, 634, 832, 863
CviQI	GTAC	4 cut(s)	394, 524, 580, 784
DdeI	CTNAG	4 cut(s)	171, 464, 498, 506
DpnI	GATC	2 cut(s)	128, 756
DpnII	GATC	2 cut(s)	126, 754
EciI	GGCGGA	1 cut(s)	56
Ecl136II	GAGCTC	1 cut(s)	49
Eco130I	CCWWGG	5 cut(s)	24, 102, 211, 308, 371
Eco147I	AGGCCT	1 cut(s)	101
Eco24I	GRGCYC	2 cut(s)	42, 51
Eco53kI	GAGCTC	1 cut(s)	49
Eco57I	CTGAAG	1 cut(s)	662
Eco88I	CYCGRG	1 cut(s)	86
EcoICRI	GAGCTC	1 cut(s)	49
EcoRII	CCWGG	3 cut(s)	132, 510, 670
EcoT14I	CCWWGG	5 cut(s)	24, 102, 211, 308, 371
EcoT38I	GRGCYC	2 cut(s)	42, 51
ErhI	CCWWGG	5 cut(s)	24, 102, 211, 308, 371
FaeI	CATG	9 cut(s)	80, 149, 215, 539, 580, 591, 637, 835, 866
FatI	CATG	9 cut(s)	76, 145, 211, 535, 576, 587, 633, 831, 862
FauI	CCCGC	1 cut(s)	591
FauNDI	CATATG	1 cut(s)	934
FbaI	TGATCA	1 cut(s)	754
Fnu4HI	GCNGC	4 cut(s)	177, 272, 599, 860
FokI	GGATG	2 cut(s)	50, 911
FriOI	GRGCYC	2 cut(s)	42, 51
Fsp4HI	GCNGC	4 cut(s)	177, 272, 599, 860
FspBI	CTAG	1 cut(s)	372
FspI	TGCGCA	1 cut(s)	830
GlaI	GCGC	2 cut(s)	733, 830
GluI	GCNGC	4 cut(s)	177, 272, 599, 860
GsaI	CCCAGC	1 cut(s)	56
GsuI	CTGGAG	1 cut(s)	506
HaeIII	GGCC	5 cut(s)	29, 101, 370, 641, 880
HapII	CCGG	2 cut(s)	122, 221
HhaI	GCGC	2 cut(s)	734, 831
Hin1II	CATG	9 cut(s)	80, 149, 215, 539, 580, 591, 637, 835, 866
Hin6I	GCGC	2 cut(s)	732, 829
HinP1I	GCGC	2 cut(s)	732, 829
HincII	GTYRAC	1 cut(s)	355
HindII	GTYRAC	1 cut(s)	355
HinfI	GANTC	5 cut(s)	15, 73, 111, 376, 502
HpaI	GTTAAC	1 cut(s)	355
HpaII	CCGG	2 cut(s)	122, 221
HphI	GGTGA	6 cut(s)	106, 136, 557, 637, 764, 823
Hpy166II	GTNNAC	3 cut(s)	355, 745, 814
Hpy188I	TCNGA	5 cut(s)	184, 499, 542, 614, 759
Hpy188III	TCNNGA	2 cut(s)	77, 157
Hpy8I	GTNNAC	3 cut(s)	355, 745, 814
HpyAV	CCTTC	2 cut(s)	154, 241
HpyCH4III	ACNGT	3 cut(s)	118, 825, 975
HpyCH4IV	ACGT	2 cut(s)	6, 330
HpyCH4V	TGCA	1 cut(s)	854
HpyF10VI	GCNNNNNNNGC	2 cut(s)	46, 176
HpyF3I	CTNAG	4 cut(s)	171, 464, 498, 506
HpySE526I	ACGT	2 cut(s)	6, 330
Hsp92II	CATG	9 cut(s)	80, 149, 215, 539, 580, 591, 637, 835, 866
HspAI	GCGC	2 cut(s)	732, 829
KpnI	GGTACC	1 cut(s)	397
Ksp22I	TGATCA	1 cut(s)	754
KspAI	GTTAAC	1 cut(s)	355
Kzo9I	GATC	2 cut(s)	126, 754
LmnI	GCTCC	3 cut(s)	54, 343, 804
Lsp1109I	GCAGC	2 cut(s)	188, 258
MaeI	CTAG	1 cut(s)	372
MaeII	ACGT	2 cut(s)	6, 330
MaeIII	GTNAC	5 cut(s)	112, 240, 331, 469, 545
MalI	GATC	2 cut(s)	128, 756
MboI	GATC	2 cut(s)	126, 754
MboII	GAAGA	5 cut(s)	455, 580, 668, 730, 788
MhlI	GDGCHC	2 cut(s)	42, 51
MluCI	AATT	3 cut(s)	363, 712, 956
MlyI	GAGTC	4 cut(s)	24, 67, 120, 511
MmeI	TCCRAC	1 cut(s)	520
MseI	TTAA	2 cut(s)	354, 401
MslI	CAYNNNNRTG	3 cut(s)	155, 632, 750
MspA1I	CMGCKG	1 cut(s)	682
MspI	CCGG	2 cut(s)	122, 221
MspR9I	CCNGG	3 cut(s)	134, 512, 672
MvaI	CCWGG	3 cut(s)	134, 512, 672
MwoI	GCNNNNNNNGC	2 cut(s)	46, 176
NcoI	CCATGG	1 cut(s)	211
NdeI	CATATG	1 cut(s)	934
NdeII	GATC	2 cut(s)	126, 754
NlaIII	CATG	9 cut(s)	80, 149, 215, 539, 580, 591, 637, 835, 866
NlaIV	GGNNCC	1 cut(s)	395
NmuCI	GTSAC	3 cut(s)	112, 331, 545
NsbI	TGCGCA	1 cut(s)	830
NspI	RCATGY	4 cut(s)	539, 580, 637, 835
NspV	TTCGAA	1 cut(s)	659
OliI	CACNNNNGTG	1 cut(s)	750
PagI	TCATGA	1 cut(s)	76
PceI	AGGCCT	1 cut(s)	101
PciI	ACATGT	3 cut(s)	535, 576, 633
PfeI	GAWTC	1 cut(s)	376
PflFI	GACNNNGTC	1 cut(s)	152
PflMI	CCANNNNNTGG	1 cut(s)	25
PkrI	GCNGC	4 cut(s)	178, 273, 600, 861
PleI	GAGTC	4 cut(s)	23, 67, 119, 510
PpsI	GAGTC	4 cut(s)	23, 67, 119, 510
PscI	ACATGT	3 cut(s)	535, 576, 633
Psp124BI	GAGCTC	1 cut(s)	51
Psp6I	CCWGG	3 cut(s)	132, 510, 670
PspFI	CCCAGC	1 cut(s)	52
PspGI	CCWGG	3 cut(s)	132, 510, 670
PspN4I	GGNNCC	1 cut(s)	395
PspPI	GGNCC	2 cut(s)	640, 878
PsyI	GACNNNGTC	1 cut(s)	152
PvuII	CAGCTG	1 cut(s)	682
RsaI	GTAC	4 cut(s)	395, 525, 581, 785
RsaNI	GTAC	4 cut(s)	394, 524, 580, 784
RseI	CAYNNNNRTG	3 cut(s)	155, 632, 750
SacI	GAGCTC	1 cut(s)	51
SaqAI	TTAA	2 cut(s)	354, 401
SatI	GCNGC	4 cut(s)	177, 272, 599, 860
Sau3AI	GATC	2 cut(s)	126, 754
Sau96I	GGNCC	2 cut(s)	640, 878
SchI	GAGTC	4 cut(s)	24, 67, 120, 511
ScrFI	CCNGG	3 cut(s)	134, 512, 672
SduI	GDGCHC	2 cut(s)	42, 51
SfuI	TTCGAA	1 cut(s)	659
SmiMI	CAYNNNNRTG	3 cut(s)	155, 632, 750
SmlI	CTYRAG	1 cut(s)	31
SmoI	CTYRAG	1 cut(s)	31
Sse9I	AATT	3 cut(s)	363, 712, 956
SseBI	AGGCCT	1 cut(s)	101
SsiI	CCGC	7 cut(s)	67, 584, 599, 857, 860, 869, 952
SspMI	CTAG	1 cut(s)	372
SstI	GAGCTC	1 cut(s)	51
StuI	AGGCCT	1 cut(s)	101
StyD4I	CCNGG	3 cut(s)	132, 510, 670
StyI	CCWWGG	5 cut(s)	24, 102, 211, 308, 371
TaaI	ACNGT	3 cut(s)	118, 825, 975
TaiI	ACGT	2 cut(s)	9, 333
TaqI	TCGA	1 cut(s)	659
TasI	AATT	3 cut(s)	363, 712, 956
TatI	WGTACW	1 cut(s)	783
TauI	GCSGC	2 cut(s)	601, 862
TfiI	GAWTC	1 cut(s)	376
Tru1I	TTAA	2 cut(s)	354, 401
Tru9I	TTAA	2 cut(s)	354, 401
TscAI	CASTG	2 cut(s)	211, 340
TseFI	GTSAC	3 cut(s)	112, 331, 545
TseI	GCWGC	2 cut(s)	176, 271
Tsp45I	GTSAC	3 cut(s)	112, 331, 545
TspDTI	ATGAA	5 cut(s)	52, 375, 456, 581, 915
TspRI	CASTG	2 cut(s)	211, 340
Tth111I	GACNNNGTC	1 cut(s)	152
Van91I	CCANNNNNTGG	1 cut(s)	25
XapI	RAATTY	2 cut(s)	363, 956
XceI	RCATGY	4 cut(s)	539, 580, 637, 835
XmaJI	CCTAGG	1 cut(s)	371
XspI	CTAG	1 cut(s)	372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.