Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000171

Orthogroup ID

OG0008121

Physical Location & Seq

Genomic Coordinates Forward (+)

72162 .. 73997

Gene Structure 1836 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_171G00441440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGCAGGTAGAGAGAGTTCAGGCATTGGCCCTTGGCAGGCTCAGCGAGTTACCGGAAAAGTTCATCCGCCCCGCGCACGAGCAGCCCTTGAACACCAGGGCCGTGGAGGGAATAGCCGTGCCGGTAATTTCCCTAGCAAAGCCACACAACGTCATCGTCGAGGAAGTTTCCGAGGCAGCTGCCCAATGGGGCTTCTTTCTGATCACTGACCATGGGATACCAGCTTCATTGATAGAGGAGTTACATAAGGTTGGCAACGAGTTTTATATGCTGCCACAGGAGGAAAAAGAGGCCTATGCAAATGACCCCGCTAGTGGCAGATTTGATGGGTATGGGACTAGGATGACCAAGAACCATGATGACAAGGTTGAGTGGATTGACTATTTCTTTCACCACACTGCTCCTCCATCTAAGGTTAACTATGATATCTGGCCTAAGAATCCTCCATCATACAGGCAAGTAAATGAAGAGTACAAGAAGGAAATGCTGAGAGTAACGGACAAGCTATTGGAGGTGCTTTCGGAGGGTCTAGGCCTGGATAGGAAGGTATTGAAATCCCATATGGGAGATGGAGAAGTGGAATTGGAAATGAAGATAAATATGTACCCGCCATGCCCACAACCCCAACTAGCCCTTGGCGTTGAGCCTCACACCGACATGTCCGCCCTCACCTTACTGGTTTCGAACGATGTTCCTGGTCTTCAGCTGTGGAAAGATGACAATTGGGTTGCTGTGAATTACCTGCCAAATGCAGTCTTTGTTAACATTGGTGATCAGATGGAGGTCTTGAGCAATGGTAAGTACAAGAGTGTTCTTCACAGGAGCTTGGTGAACAAGGAACGGTTGCGCATGTCATGGGCTGTGTTCATTGCGCCACCACATGAGGCTGTGATTGGGCCTCTTCCGGAGCTTGTGGACGAGCAAAATCCTGCCAAATACTCAACCAAAACATATGGTGAATACCGACACAGCAAATTCAACAAGATCCCACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00941 ko01100 ko01110 map00941 map01100 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

331

Amino Acids

37.63

Weight (kDa)

5.59

Isoelectric Point (pI)

40.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	40 - 147	1.3e-23	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	197 - 292	1.4e-31	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008121)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g26480
malus_domestica	MD15G1353800.v1.1
prunus_persica	Prupe.1G502300_v2.0.a1 Prupe.1G502500_v2.0.a1 Prupe.I003900_v2.0.a1 Prupe.I003900_v2.0.a1
pyrus_communis	pycom15g31720
rosa_chinensis	RchiOBHm_Chr6g0295241
rosa_laevigata	RLG00000011816
rosa_multiflora	Rmu_sc0007232.1_g000003 Rmu_sc0007232.1_g000004 Rmu_sc0010768.1_g000002
rosa_roxburghii	Rroxscaffold_171G00441440 Rroxscaffold_7G00172630 Rroxscaffold_7G00172650
rosa_rugosa	Rorug06G0249700 Rorug06G0249800.1 Rorug06G0249900
rosa_samantha	Rh6AG362800 Rh6BG370800 Rh6CG377100 Rh6DG363600
rosa_wichuraiana	Rw6G031660 Rw7G022060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	848
Acc36I	ACCTGC	1 cut(s)	750
AccII	CGCG	1 cut(s)	74
AccIII	TCCGGA	1 cut(s)	904
AciI	CCGC	5 cut(s)	67, 72, 309, 608, 663
AclWI	GGATC	1 cut(s)	979
AcsI	RAATTY	1 cut(s)	974
AcuI	CTGAAG	1 cut(s)	686
AfaI	GTAC	3 cut(s)	473, 605, 803
AfiI	CCNNNNNNNGG	2 cut(s)	36, 314
AflIII	ACRYGT	1 cut(s)	657
AgsI	TTSAA	3 cut(s)	91, 553, 979
AjnI	CCWGG	3 cut(s)	95, 534, 694
AluBI	AGCT	6 cut(s)	179, 224, 505, 706, 825, 910
AluI	AGCT	6 cut(s)	179, 224, 505, 706, 825, 910
AlwI	GGATC	1 cut(s)	979
Aor13HI	TCCGGA	1 cut(s)	904
AoxI	GGCC	6 cut(s)	27, 99, 291, 431, 532, 896
ApeKI	GCWGC	4 cut(s)	82, 176, 179, 271
ApoI	RAATTY	1 cut(s)	974
AspLEI	GCGC	3 cut(s)	76, 849, 874
AspS9I	GGNCC	3 cut(s)	28, 99, 896
AsuHPI	GGTGA	5 cut(s)	383, 661, 782, 841, 968
AsuII	TTCGAA	1 cut(s)	683
BauI	CACGAG	1 cut(s)	77
BbsI	GAAGAC	1 cut(s)	692
BbvI	GCAGC	4 cut(s)	94, 166, 188, 258
BccI	CCATC	5 cut(s)	320, 415, 454, 563, 772
BceAI	ACGGC	2 cut(s)	86, 101
BcgI	CGANNNNNNTGC	2 cut(s)	161, 195
BciT130I	CCWGG	3 cut(s)	97, 536, 696
BciVI	GTATCC	1 cut(s)	210
BclI	TGATCA	2 cut(s)	201, 772
BfaI	CTAG	5 cut(s)	134, 312, 339, 530, 629
BfuAI	ACCTGC	1 cut(s)	750
BfuI	GTATCC	1 cut(s)	210
BisI	GCNGC	4 cut(s)	83, 177, 180, 272
BlpI	GCTNAGC	1 cut(s)	41
BlsI	GCNGC	4 cut(s)	84, 178, 181, 273
Bme1390I	CCNGG	3 cut(s)	97, 536, 696
BmgT120I	GGNCC	3 cut(s)	28, 99, 896
BmrFI	CCNGG	3 cut(s)	97, 536, 696
BpiI	GAAGAC	1 cut(s)	692
Bpu1102I	GCTNAGC	1 cut(s)	41
Bpu14I	TTCGAA	1 cut(s)	683
BpuEI	CTTGAG	1 cut(s)	808
BsaJI	CCNNGG	6 cut(s)	31, 96, 102, 171, 211, 634
BsaWI	WCCGGW	2 cut(s)	52, 904
BsaXI	ACNNNNNCTCC	2 cut(s)	388, 418
Bsc4I	CCNNNNNNNGG	2 cut(s)	36, 314
Bse118I	RCCGGY	1 cut(s)	121
Bse1I	ACTGG	1 cut(s)	681
Bse3DI	GCAATG	2 cut(s)	799, 867
BseAI	TCCGGA	1 cut(s)	904
BseBI	CCWGG	3 cut(s)	97, 536, 696
BseDI	CCNNGG	6 cut(s)	31, 96, 102, 171, 211, 634
BseGI	GGATG	2 cut(s)	63, 348
BseLI	CCNNNNNNNGG	2 cut(s)	36, 314
BseMI	GCAATG	2 cut(s)	799, 867
BseMII	CTCAG	2 cut(s)	55, 479
BseNI	ACTGG	1 cut(s)	681
BseRI	GAGGAG	2 cut(s)	251, 393
BseXI	GCAGC	4 cut(s)	94, 166, 188, 258
Bsh1236I	CGCG	1 cut(s)	74
BshFI	GGCC	6 cut(s)	29, 101, 293, 433, 534, 898
BsiSI	CCGG	3 cut(s)	53, 122, 905
BslFI	GGGAC	1 cut(s)	349
BslI	CCNNNNNNNGG	2 cut(s)	36, 314
BsmFI	GGGAC	1 cut(s)	349
BsnI	GGCC	6 cut(s)	29, 101, 293, 433, 534, 898
Bsp119I	TTCGAA	1 cut(s)	683
Bsp13I	TCCGGA	1 cut(s)	904
Bsp143I	GATC	3 cut(s)	201, 772, 984
Bsp1720I	GCTNAGC	1 cut(s)	41
Bsp19I	CCATGG	1 cut(s)	211
BspACI	CCGC	5 cut(s)	67, 72, 309, 608, 663
BspANI	GGCC	6 cut(s)	29, 101, 293, 433, 534, 898
BspCNI	CTCAG	2 cut(s)	54, 480
BspEI	TCCGGA	1 cut(s)	904
BspFNI	CGCG	1 cut(s)	74
BspMI	ACCTGC	1 cut(s)	750
BspPI	GGATC	1 cut(s)	979
BspT104I	TTCGAA	1 cut(s)	683
BsrDI	GCAATG	2 cut(s)	799, 867
BsrFI	RCCGGY	1 cut(s)	121
BsrI	ACTGG	1 cut(s)	681
BssAI	RCCGGY	1 cut(s)	121
BssECI	CCNNGG	6 cut(s)	31, 96, 102, 171, 211, 634
BssMI	GATC	3 cut(s)	201, 772, 984
BssSI	CACGAG	1 cut(s)	77
BssT1I	CCWWGG	3 cut(s)	31, 211, 634
Bst2BI	CACGAG	1 cut(s)	77
Bst2UI	CCWGG	3 cut(s)	97, 536, 696
Bst4CI	ACNGT	2 cut(s)	843, 993
Bst6I	CTCTTC	2 cut(s)	462, 906
BstBI	TTCGAA	1 cut(s)	683
BstC8I	GCNNGC	1 cut(s)	38
BstDEI	CTNAG	4 cut(s)	41, 411, 435, 488
BstDSI	CCRYGG	2 cut(s)	102, 211
BstF5I	GGATG	2 cut(s)	63, 348
BstFNI	CGCG	1 cut(s)	74
BstHHI	GCGC	3 cut(s)	76, 849, 874
BstKTI	GATC	3 cut(s)	204, 775, 987
BstMBI	GATC	3 cut(s)	201, 772, 984
BstMWI	GCNNNNNNNGC	2 cut(s)	42, 82
BstNI	CCWGG	3 cut(s)	97, 536, 696
BstNSI	RCATGY	2 cut(s)	661, 853
BstSCI	CCNGG	3 cut(s)	95, 534, 694
BstUI	CGCG	1 cut(s)	74
BstV1I	GCAGC	4 cut(s)	94, 166, 188, 258
BstV2I	GAAGAC	1 cut(s)	692
BstX2I	RGATCY	1 cut(s)	984
BstXI	CCANNNNNNTGG	1 cut(s)	103
BstYI	RGATCY	1 cut(s)	984
BsuI	GTATCC	1 cut(s)	210
BsuRI	GGCC	6 cut(s)	29, 101, 293, 433, 534, 898
BtgI	CCRYGG	2 cut(s)	102, 211
BtsCI	GGATG	2 cut(s)	63, 348
BtsI	GCAGTG	1 cut(s)	396
BtsIMutI	CAGTG	2 cut(s)	204, 396
BveI	ACCTGC	1 cut(s)	750
Cac8I	GCNNGC	1 cut(s)	38
CfoI	GCGC	3 cut(s)	76, 849, 874
Cfr10I	RCCGGY	1 cut(s)	121
Cfr13I	GGNCC	3 cut(s)	28, 99, 896
Csp6I	GTAC	3 cut(s)	472, 604, 802
CviAII	CATG	7 cut(s)	212, 356, 612, 658, 850, 855, 881
CviQI	GTAC	3 cut(s)	472, 604, 802
DdeI	CTNAG	4 cut(s)	41, 411, 435, 488
DpnI	GATC	3 cut(s)	203, 774, 986
DpnII	GATC	3 cut(s)	201, 772, 984
Eam1104I	CTCTTC	2 cut(s)	462, 906
EarI	CTCTTC	2 cut(s)	462, 906
EciI	GGCGGA	2 cut(s)	56, 652
Eco130I	CCWWGG	3 cut(s)	31, 211, 634
Eco147I	AGGCCT	2 cut(s)	293, 534
Eco32I	GATATC	1 cut(s)	427
Eco57I	CTGAAG	1 cut(s)	686
EcoRII	CCWGG	3 cut(s)	95, 534, 694
EcoRV	GATATC	1 cut(s)	427
EcoT14I	CCWWGG	3 cut(s)	31, 211, 634
ErhI	CCWWGG	3 cut(s)	31, 211, 634
FaeI	CATG	7 cut(s)	215, 359, 615, 661, 853, 858, 884
FaqI	GGGAC	1 cut(s)	349
FatI	CATG	7 cut(s)	211, 355, 611, 657, 849, 854, 880
FauI	CCCGC	3 cut(s)	79, 316, 615
FauNDI	CATATG	2 cut(s)	561, 952
FbaI	TGATCA	2 cut(s)	201, 772
Fnu4HI	GCNGC	4 cut(s)	83, 177, 180, 272
FokI	GGATG	2 cut(s)	50, 355
Fsp4HI	GCNGC	4 cut(s)	83, 177, 180, 272
FspBI	CTAG	5 cut(s)	134, 312, 339, 530, 629
FspI	TGCGCA	1 cut(s)	848
GlaI	GCGC	3 cut(s)	75, 848, 873
GluI	GCNGC	4 cut(s)	83, 177, 180, 272
HaeIII	GGCC	6 cut(s)	29, 101, 293, 433, 534, 898
HapII	CCGG	3 cut(s)	53, 122, 905
HhaI	GCGC	3 cut(s)	76, 849, 874
Hin1II	CATG	7 cut(s)	215, 359, 615, 661, 853, 858, 884
Hin6I	GCGC	3 cut(s)	74, 847, 872
HinP1I	GCGC	3 cut(s)	74, 847, 872
HincII	GTYRAC	2 cut(s)	418, 763
HindII	GTYRAC	2 cut(s)	418, 763
HinfI	GANTC	1 cut(s)	439
HpaI	GTTAAC	2 cut(s)	418, 763
HpaII	CCGG	3 cut(s)	53, 122, 905
HphI	GGTGA	5 cut(s)	383, 661, 782, 841, 968
Hpy166II	GTNNAC	4 cut(s)	418, 763, 832, 916
Hpy188I	TCNGA	4 cut(s)	172, 201, 523, 777
Hpy188III	TCNNGA	2 cut(s)	787, 905
Hpy8I	GTNNAC	4 cut(s)	418, 763, 832, 916
Hpy99I	CGWCG	1 cut(s)	161
HpyAV	CCTTC	2 cut(s)	472, 538
HpyCH4III	ACNGT	2 cut(s)	843, 993
HpyCH4IV	ACGT	1 cut(s)	150
HpyCH4V	TGCA	3 cut(s)	4, 299, 752
HpyF10VI	GCNNNNNNNGC	2 cut(s)	42, 82
HpyF3I	CTNAG	4 cut(s)	41, 411, 435, 488
HpySE526I	ACGT	1 cut(s)	150
Hsp92II	CATG	7 cut(s)	215, 359, 615, 661, 853, 858, 884
HspAI	GCGC	3 cut(s)	74, 847, 872
Kpn2I	TCCGGA	1 cut(s)	904
Ksp22I	TGATCA	2 cut(s)	201, 772
KspAI	GTTAAC	2 cut(s)	418, 763
Kzo9I	GATC	3 cut(s)	201, 772, 984
LmnI	GCTCC	3 cut(s)	406, 822, 907
Lsp1109I	GCAGC	4 cut(s)	94, 166, 188, 258
MaeI	CTAG	5 cut(s)	134, 312, 339, 530, 629
MaeII	ACGT	1 cut(s)	150
MaeIII	GTNAC	3 cut(s)	48, 240, 493
MalI	GATC	3 cut(s)	203, 774, 986
MboI	GATC	3 cut(s)	201, 772, 984
MboII	GAAGA	5 cut(s)	479, 604, 692, 806, 893
MfeI	CAATTG	1 cut(s)	721
MflI	RGATCY	1 cut(s)	984
MluCI	AATT	5 cut(s)	126, 581, 721, 736, 974
MroI	TCCGGA	1 cut(s)	904
MseI	TTAA	2 cut(s)	417, 762
MslI	CAYNNNNRTG	1 cut(s)	656
MspA1I	CMGCKG	2 cut(s)	179, 706
MspI	CCGG	3 cut(s)	53, 122, 905
MspR9I	CCNGG	3 cut(s)	97, 536, 696
MunI	CAATTG	1 cut(s)	721
MvaI	CCWGG	3 cut(s)	97, 536, 696
MvnI	CGCG	1 cut(s)	74
MwoI	GCNNNNNNNGC	2 cut(s)	42, 82
NcoI	CCATGG	1 cut(s)	211
NdeI	CATATG	2 cut(s)	561, 952
NdeII	GATC	3 cut(s)	201, 772, 984
NlaIII	CATG	7 cut(s)	215, 359, 615, 661, 853, 858, 884
NsbI	TGCGCA	1 cut(s)	848
NspI	RCATGY	2 cut(s)	661, 853
NspV	TTCGAA	1 cut(s)	683
PceI	AGGCCT	2 cut(s)	293, 534
PciI	ACATGT	1 cut(s)	657
PcsI	WCGNNNNNNNCGW	1 cut(s)	156
PfeI	GAWTC	1 cut(s)	439
PkrI	GCNGC	4 cut(s)	84, 178, 181, 273
PscI	ACATGT	1 cut(s)	657
Psp6I	CCWGG	3 cut(s)	95, 534, 694
PspGI	CCWGG	3 cut(s)	95, 534, 694
PspPI	GGNCC	3 cut(s)	28, 99, 896
PsrI	GAACNNNNNNTAC	1 cut(s)	32
PsuI	RGATCY	1 cut(s)	984
PvuII	CAGCTG	2 cut(s)	179, 706
RsaI	GTAC	3 cut(s)	473, 605, 803
RsaNI	GTAC	3 cut(s)	472, 604, 802
RseI	CAYNNNNRTG	1 cut(s)	656
SaqAI	TTAA	2 cut(s)	417, 762
SatI	GCNGC	4 cut(s)	83, 177, 180, 272
Sau3AI	GATC	3 cut(s)	201, 772, 984
Sau96I	GGNCC	3 cut(s)	28, 99, 896
ScrFI	CCNGG	3 cut(s)	97, 536, 696
SfuI	TTCGAA	1 cut(s)	683
SmiMI	CAYNNNNRTG	1 cut(s)	656
SmlI	CTYRAG	1 cut(s)	787
SmoI	CTYRAG	1 cut(s)	787
Sse9I	AATT	5 cut(s)	126, 581, 721, 736, 974
SseBI	AGGCCT	2 cut(s)	293, 534
SsiI	CCGC	5 cut(s)	67, 72, 309, 608, 663
SspMI	CTAG	5 cut(s)	134, 312, 339, 530, 629
StuI	AGGCCT	2 cut(s)	293, 534
StyD4I	CCNGG	3 cut(s)	95, 534, 694
StyI	CCWWGG	3 cut(s)	31, 211, 634
TaaI	ACNGT	2 cut(s)	843, 993
TaiI	ACGT	1 cut(s)	153
TaqI	TCGA	2 cut(s)	159, 683
TasI	AATT	5 cut(s)	126, 581, 721, 736, 974
TatI	WGTACW	2 cut(s)	471, 801
TfiI	GAWTC	1 cut(s)	439
Tru1I	TTAA	2 cut(s)	417, 762
Tru9I	TTAA	2 cut(s)	417, 762
TscAI	CASTG	2 cut(s)	211, 403
TseI	GCWGC	4 cut(s)	82, 176, 179, 271
TspDTI	ATGAA	5 cut(s)	52, 216, 480, 605, 856
TspGWI	ACGGA	1 cut(s)	512
TspRI	CASTG	2 cut(s)	211, 403
XapI	RAATTY	1 cut(s)	974
XceI	RCATGY	2 cut(s)	661, 853
XcmI	CCANNNNNNNNNTGG	2 cut(s)	566, 632
XspI	CTAG	5 cut(s)	134, 312, 339, 530, 629

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.