Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0008121

Physical Location & Seq

Genomic Coordinates Reverse (-)

30282779 .. 30287901

Gene Structure 5123 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g31720.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGGGGGAACGGAGGTGGAGAGAGTACAGGCACTGGCTTTGGGCGGGTTGAACCAACTTCCGGCCAAGTTTGTTCGCCCAGCCCATGAGCAGCCTGAGAACAGCAAAGCCTTAGAGGGGGTCTCAGTGCCTGTTATCTCCCTAGCTCAGCCTCATGATGTTGTTGTGAAGAGGGTGGCGGAGGCAGCCACCGAATGGGGTTTTTTTCTCATCACTGACCATGGCATACCGTCGTCTTTGATCCAACGGTTGCAAAAAGTTGGTCAGGAGTTCTTCCTCCTCACTCAGGAGGAAAAGGAGGCCTATGCGAACGACCCTGCGAATGGGAAGTTTGATGGATATGGCACTAAAATGACAAAGAACCATGACGAGAAGGTCGAATGGATCGACTATTTCTTCCATCTTACAGCGCCTCCATCAAAGGTCAACTATGAAATCTGGCCTAAGAACCCTCCATCTTACAGGGAAGTGAATGACGCATATAACAAGGAAATGCTAAGAGTGACAGACAAGTTACTGGAGGTGCTTTCAGAAGGTCTAGGGCTGGAAAGCAAGGTTCTGAAATCCCATGTGGGAGGTGAAGAAGTGGAACTGGAAATGAAAATCAACATGTACCCACCATGCCCTCAGCCCCAACTAGCCCTTGGAGTTGAGCCTCACACTGACATGTCAGCCCTAACCCTACTTGTCTCGAACAATGTTCCCGGCCTTCAGCTGTGGAAAGATGACAACTGGGTTGCTGTCGACTACCTGCCAAATGCGGTTTTTGTTCACATTGGTGATCAGATGGAGATCTTGAGCAATGGCAAGTACAAGAGTGTTCTCCACAGAAGTTTGGTGAATAAGGAACGTATGCGCATGTCGTGGGCCGTGTTCATTGCTCCTCCACATGAGGCTGTGATCGGACCTCTACAGGAGCTCTTGGACGAGCAAAATCCTGCCAAATACTCGACCAAAACATACGCGGAATACCGACACCGAAAGTTCAACAAGCTCCCACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00941 ko01100 ko01110 map00941 map01100 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

335

Amino Acids

37.74

Weight (kDa)

5.71

Isoelectric Point (pI)

42.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008121)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g26480
malus_domestica	MD15G1353800.v1.1
prunus_persica	Prupe.1G502300_v2.0.a1 Prupe.1G502500_v2.0.a1 Prupe.I003900_v2.0.a1 Prupe.I003900_v2.0.a1
pyrus_communis	pycom15g31720
rosa_chinensis	RchiOBHm_Chr6g0295241
rosa_laevigata	RLG00000011816
rosa_multiflora	Rmu_sc0007232.1_g000003 Rmu_sc0007232.1_g000004 Rmu_sc0010768.1_g000002
rosa_roxburghii	Rroxscaffold_171G00441440 Rroxscaffold_7G00172630 Rroxscaffold_7G00172650
rosa_rugosa	Rorug06G0249700 Rorug06G0249800.1 Rorug06G0249900
rosa_samantha	Rh6AG362800 Rh6BG370800 Rh6CG377100 Rh6DG363600
rosa_wichuraiana	Rw6G031660 Rw7G022060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	374
Acc16I	TGCGCA	1 cut(s)	857
Acc36I	ACCTGC	1 cut(s)	759
AccB7I	CCANNNNNTGG	1 cut(s)	195
AccI	GTMKAC	1 cut(s)	744
AccII	CGCG	1 cut(s)	965
AciI	CCGC	4 cut(s)	45, 179, 761, 965
AclWI	GGATC	2 cut(s)	235, 392
AcoI	YGGCCR	1 cut(s)	63
AcuI	CTGAAG	1 cut(s)	695
AfaI	GTAC	3 cut(s)	27, 614, 812
AfiI	CCNNNNNNNGG	5 cut(s)	61, 117, 195, 286, 323
AflIII	ACRYGT	2 cut(s)	609, 666
AgsI	TTSAA	2 cut(s)	52, 988
AleI	CACNNNNGTG	1 cut(s)	777
AluBI	AGCT	4 cut(s)	146, 715, 919, 994
AluI	AGCT	4 cut(s)	146, 715, 919, 994
Alw21I	GWGCWC	1 cut(s)	921
Alw26I	GTCTC	2 cut(s)	127, 694
AlwI	GGATC	2 cut(s)	235, 392
AlwNI	CAGNNNCTG	2 cut(s)	34, 131
AoxI	GGCC	5 cut(s)	63, 300, 440, 706, 867
ApeKI	GCWGC	2 cut(s)	91, 185
ArsI	GACNNNNNNTTYG	2 cut(s)	247, 279
AspLEI	GCGC	2 cut(s)	412, 858
AspS9I	GGNCC	2 cut(s)	867, 905
AsuC2I	CCSGG	1 cut(s)	705
AsuHPI	GGTGA	3 cut(s)	590, 791, 850
AvaII	GGWCC	1 cut(s)	905
BanII	GRGCYC	1 cut(s)	921
Bbv12I	GWGCWC	1 cut(s)	921
BbvCI	CCTCAGC	1 cut(s)	627
BbvI	GCAGC	2 cut(s)	103, 197
BccI	CCATC	5 cut(s)	329, 408, 424, 463, 781
BceAI	ACGGC	1 cut(s)	854
BclI	TGATCA	1 cut(s)	781
BcnI	CCSGG	1 cut(s)	705
BcoDI	GTCTC	2 cut(s)	127, 694
BfaI	CTAG	3 cut(s)	143, 539, 638
BfmI	CTRYAG	1 cut(s)	911
BfoI	RGCGCY	1 cut(s)	413
BfuAI	ACCTGC	1 cut(s)	759
BglII	AGATCT	1 cut(s)	792
BisI	GCNGC	2 cut(s)	92, 186
BlpI	GCTNAGC	1 cut(s)	147
BlsI	GCNGC	2 cut(s)	93, 187
Bme1390I	CCNGG	1 cut(s)	705
Bme18I	GGWCC	1 cut(s)	905
BmgT120I	GGNCC	2 cut(s)	867, 905
BmrFI	CCNGG	1 cut(s)	705
BmrI	ACTGGG	1 cut(s)	742
BmuI	ACTGGG	1 cut(s)	742
BplI	GAGNNNNNCTC	2 cut(s)	107, 139
BpmI	CTGGAG	1 cut(s)	539
Bpu10I	CCTNAGC	1 cut(s)	627
Bpu1102I	GCTNAGC	1 cut(s)	147
BpuEI	CTTGAG	1 cut(s)	817
BpuMI	CCSGG	1 cut(s)	705
BsaBI	GATNNNNATC	1 cut(s)	791
BsaI	GGTCTC	1 cut(s)	127
BsaJI	CCNNGG	2 cut(s)	220, 643
BsaXI	ACNNNNNCTCC	2 cut(s)	397, 427
Bsc4I	CCNNNNNNNGG	5 cut(s)	61, 117, 195, 286, 323
Bse1I	ACTGG	4 cut(s)	39, 522, 597, 737
Bse3DI	GCAATG	2 cut(s)	808, 876
Bse8I	GATNNNNATC	1 cut(s)	791
BseDI	CCNNGG	2 cut(s)	220, 643
BseJI	GATNNNNATC	1 cut(s)	791
BseLI	CCNNNNNNNGG	5 cut(s)	61, 117, 195, 286, 323
BseMI	GCAATG	2 cut(s)	808, 876
BseMII	CTCAG	5 cut(s)	87, 138, 161, 299, 641
BseNI	ACTGG	4 cut(s)	39, 522, 597, 737
BseRI	GAGGAG	2 cut(s)	269, 873
BseXI	GCAGC	2 cut(s)	103, 197
BseYI	CCCAGC	1 cut(s)	79
Bsh1236I	CGCG	1 cut(s)	965
BshFI	GGCC	5 cut(s)	65, 302, 442, 708, 869
BsiHKAI	GWGCWC	1 cut(s)	921
BsiSI	CCGG	2 cut(s)	62, 705
BslI	CCNNNNNNNGG	5 cut(s)	61, 117, 195, 286, 323
BsmAI	GTCTC	2 cut(s)	127, 694
BsnI	GGCC	5 cut(s)	65, 302, 442, 708, 869
Bso31I	GGTCTC	1 cut(s)	127
Bsp1286I	GDGCHC	1 cut(s)	921
Bsp143I	GATC	5 cut(s)	240, 384, 781, 792, 900
Bsp1720I	GCTNAGC	1 cut(s)	147
Bsp19I	CCATGG	1 cut(s)	220
BspACI	CCGC	4 cut(s)	45, 179, 761, 965
BspANI	GGCC	5 cut(s)	65, 302, 442, 708, 869
BspCNI	CTCAG	5 cut(s)	88, 137, 160, 298, 640
BspFNI	CGCG	1 cut(s)	965
BspHI	TCATGA	1 cut(s)	154
BspMI	ACCTGC	1 cut(s)	759
BspPI	GGATC	2 cut(s)	235, 392
BspTNI	GGTCTC	1 cut(s)	127
BsrDI	GCAATG	2 cut(s)	808, 876
BsrI	ACTGG	4 cut(s)	39, 522, 597, 737
BssECI	CCNNGG	2 cut(s)	220, 643
BssMI	GATC	5 cut(s)	240, 384, 781, 792, 900
BssT1I	CCWWGG	2 cut(s)	220, 643
Bst4CI	ACNGT	3 cut(s)	231, 249, 1002
Bst6I	CTCTTC	1 cut(s)	164
BstDEI	CTNAG	8 cut(s)	96, 112, 124, 147, 285, 444, 497, 627
BstDSI	CCRYGG	1 cut(s)	220
BstENI	CCTNNNNNAGG	1 cut(s)	284
BstFNI	CGCG	1 cut(s)	965
BstH2I	RGCGCY	1 cut(s)	413
BstHHI	GCGC	2 cut(s)	412, 858
BstKTI	GATC	5 cut(s)	243, 387, 784, 795, 903
BstMAI	GTCTC	2 cut(s)	127, 694
BstMBI	GATC	5 cut(s)	240, 384, 781, 792, 900
BstMWI	GCNNNNNNNGC	1 cut(s)	185
BstNSI	RCATGY	3 cut(s)	613, 670, 862
BstSCI	CCNGG	1 cut(s)	703
BstSFI	CTRYAG	1 cut(s)	911
BstUI	CGCG	1 cut(s)	965
BstV1I	GCAGC	2 cut(s)	103, 197
BstX2I	RGATCY	1 cut(s)	792
BstYI	RGATCY	1 cut(s)	792
BsuRI	GGCC	5 cut(s)	65, 302, 442, 708, 869
BtgI	CCRYGG	1 cut(s)	220
BtsIMutI	CAGTG	4 cut(s)	32, 132, 213, 660
BveI	ACCTGC	1 cut(s)	759
CaiI	CAGNNNCTG	2 cut(s)	34, 131
CciI	TCATGA	1 cut(s)	154
CfoI	GCGC	2 cut(s)	412, 858
Cfr13I	GGNCC	2 cut(s)	867, 905
CseI	GACGC	1 cut(s)	485
Csp6I	GTAC	3 cut(s)	26, 613, 811
CviQI	GTAC	3 cut(s)	26, 613, 811
DdeI	CTNAG	8 cut(s)	96, 112, 124, 147, 285, 444, 497, 627
DpnI	GATC	5 cut(s)	242, 386, 783, 794, 902
DpnII	GATC	5 cut(s)	240, 384, 781, 792, 900
DrdI	GACNNNNNNGTC	1 cut(s)	374
DseDI	GACNNNNNNGTC	1 cut(s)	374
EaeI	YGGCCR	1 cut(s)	63
Eam1104I	CTCTTC	1 cut(s)	164
EarI	CTCTTC	1 cut(s)	164
EciI	GGCGGA	1 cut(s)	194
Ecl136II	GAGCTC	1 cut(s)	919
Eco130I	CCWWGG	2 cut(s)	220, 643
Eco147I	AGGCCT	1 cut(s)	302
Eco24I	GRGCYC	1 cut(s)	921
Eco31I	GGTCTC	1 cut(s)	127
Eco47I	GGWCC	1 cut(s)	905
Eco53kI	GAGCTC	1 cut(s)	919
Eco57I	CTGAAG	1 cut(s)	695
EcoICRI	GAGCTC	1 cut(s)	919
EcoNI	CCTNNNNNAGG	1 cut(s)	284
EcoT14I	CCWWGG	2 cut(s)	220, 643
EcoT38I	GRGCYC	1 cut(s)	921
ErhI	CCWWGG	2 cut(s)	220, 643
FauI	CCCGC	1 cut(s)	38
FbaI	TGATCA	1 cut(s)	781
FblI	GTMKAC	1 cut(s)	744
Fnu4HI	GCNGC	2 cut(s)	92, 186
FriOI	GRGCYC	1 cut(s)	921
Fsp4HI	GCNGC	2 cut(s)	92, 186
FspAI	RTGCGCAY	1 cut(s)	857
FspBI	CTAG	3 cut(s)	143, 539, 638
FspI	TGCGCA	1 cut(s)	857
GlaI	GCGC	2 cut(s)	411, 857
GluI	GCNGC	2 cut(s)	92, 186
GsaI	CCCAGC	1 cut(s)	83
GsuI	CTGGAG	1 cut(s)	539
HaeII	RGCGCY	1 cut(s)	413
HaeIII	GGCC	5 cut(s)	65, 302, 442, 708, 869
HapII	CCGG	2 cut(s)	62, 705
HgaI	GACGC	1 cut(s)	485
HhaI	GCGC	2 cut(s)	412, 858
Hin6I	GCGC	2 cut(s)	410, 856
HinP1I	GCGC	2 cut(s)	410, 856
HincII	GTYRAC	2 cut(s)	427, 745
HindII	GTYRAC	2 cut(s)	427, 745
HpaII	CCGG	2 cut(s)	62, 705
HphI	GGTGA	3 cut(s)	590, 791, 850
Hpy166II	GTNNAC	3 cut(s)	427, 745, 772
Hpy188I	TCNGA	4 cut(s)	532, 561, 786, 905
Hpy188III	TCNNGA	5 cut(s)	155, 266, 287, 691, 796
Hpy8I	GTNNAC	3 cut(s)	427, 745, 772
Hpy99I	CGWCG	1 cut(s)	235
HpyAV	CCTTC	3 cut(s)	367, 527, 719
HpyCH4III	ACNGT	3 cut(s)	231, 249, 1002
HpyCH4IV	ACGT	1 cut(s)	850
HpyCH4V	TGCA	1 cut(s)	253
HpyF10VI	GCNNNNNNNGC	1 cut(s)	185
HpyF3I	CTNAG	8 cut(s)	96, 112, 124, 147, 285, 444, 497, 627
HpySE526I	ACGT	1 cut(s)	850
HspAI	GCGC	2 cut(s)	410, 856
Ksp22I	TGATCA	1 cut(s)	781
Kzo9I	GATC	5 cut(s)	240, 384, 781, 792, 900
LmnI	GCTCC	3 cut(s)	886, 916, 999
Lsp1109I	GCAGC	2 cut(s)	103, 197
MaeI	CTAG	3 cut(s)	143, 539, 638
MaeII	ACGT	1 cut(s)	850
MaeIII	GTNAC	2 cut(s)	502, 513
MalI	GATC	5 cut(s)	242, 386, 783, 794, 902
MboI	GATC	5 cut(s)	240, 384, 781, 792, 900
MboII	GAAGA	4 cut(s)	181, 265, 388, 593
MflI	RGATCY	1 cut(s)	792
MhlI	GDGCHC	1 cut(s)	921
MmeI	TCCRAC	1 cut(s)	268
MslI	CAYNNNNRTG	3 cut(s)	350, 665, 777
MspA1I	CMGCKG	1 cut(s)	715
MspI	CCGG	2 cut(s)	62, 705
MspR9I	CCNGG	1 cut(s)	705
MvnI	CGCG	1 cut(s)	965
MwoI	GCNNNNNNNGC	1 cut(s)	185
NciI	CCSGG	1 cut(s)	705
NcoI	CCATGG	1 cut(s)	220
NdeII	GATC	5 cut(s)	240, 384, 781, 792, 900
NmuCI	GTSAC	1 cut(s)	502
NsbI	TGCGCA	1 cut(s)	857
NspI	RCATGY	3 cut(s)	613, 670, 862
OliI	CACNNNNGTG	1 cut(s)	777
PagI	TCATGA	1 cut(s)	154
PceI	AGGCCT	1 cut(s)	302
PciI	ACATGT	2 cut(s)	609, 666
PcsI	WCGNNNNNNNCGW	2 cut(s)	375, 384
PflMI	CCANNNNNTGG	1 cut(s)	195
PkrI	GCNGC	2 cut(s)	93, 187
PscI	ACATGT	2 cut(s)	609, 666
Psp124BI	GAGCTC	1 cut(s)	921
PspFI	CCCAGC	1 cut(s)	79
PspPI	GGNCC	2 cut(s)	867, 905
PstNI	CAGNNNCTG	2 cut(s)	34, 131
PsuI	RGATCY	1 cut(s)	792
PvuII	CAGCTG	1 cut(s)	715
RsaI	GTAC	3 cut(s)	27, 614, 812
RsaNI	GTAC	3 cut(s)	26, 613, 811
RseI	CAYNNNNRTG	3 cut(s)	350, 665, 777
SacI	GAGCTC	1 cut(s)	921
SalI	GTCGAC	1 cut(s)	743
SatI	GCNGC	2 cut(s)	92, 186
Sau3AI	GATC	5 cut(s)	240, 384, 781, 792, 900
Sau96I	GGNCC	2 cut(s)	867, 905
ScrFI	CCNGG	1 cut(s)	705
SduI	GDGCHC	1 cut(s)	921
SfcI	CTRYAG	1 cut(s)	911
SinI	GGWCC	1 cut(s)	905
SmiMI	CAYNNNNRTG	3 cut(s)	350, 665, 777
SmlI	CTYRAG	1 cut(s)	796
SmoI	CTYRAG	1 cut(s)	796
SseBI	AGGCCT	1 cut(s)	302
SsiI	CCGC	4 cut(s)	45, 179, 761, 965
SspMI	CTAG	3 cut(s)	143, 539, 638
SstI	GAGCTC	1 cut(s)	921
StuI	AGGCCT	1 cut(s)	302
StyD4I	CCNGG	1 cut(s)	703
StyI	CCWWGG	2 cut(s)	220, 643
TaaI	ACNGT	3 cut(s)	231, 249, 1002
TaiI	ACGT	1 cut(s)	853
TaqI	TCGA	5 cut(s)	378, 387, 692, 744, 950
TatI	WGTACW	2 cut(s)	25, 810
TscAI	CASTG	4 cut(s)	39, 132, 220, 667
TseFI	GTSAC	1 cut(s)	502
TseI	GCWGC	2 cut(s)	91, 185
Tsp45I	GTSAC	1 cut(s)	502
TspDTI	ATGAA	3 cut(s)	447, 614, 865
TspGWI	ACGGA	1 cut(s)	26
TspRI	CASTG	4 cut(s)	39, 132, 220, 667
Van91I	CCANNNNNTGG	1 cut(s)	195
VpaK11BI	GGWCC	1 cut(s)	905
XagI	CCTNNNNNAGG	1 cut(s)	284
XceI	RCATGY	3 cut(s)	613, 670, 862
XcmI	CCANNNNNNNNNTGG	1 cut(s)	641
XmiI	GTMKAC	1 cut(s)	744
XspI	CTAG	3 cut(s)	143, 539, 638

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.