Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0008121

Physical Location & Seq

Genomic Coordinates Reverse (-)

41551821 .. 41553302

Gene Structure 1482 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G502300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGGAGGTGGAGAGAGTGCAGGCCTTGGCCATCAGCGGGCTGAACGAGCTTCCAGCGAAGTTCGTTCGACCAGCCCATGAGCAGCCCGAGAATAGCAAGGCCCTAGAGGGAGTCACGGTGCCTGTTATCTCCCTAGCTCAGCCTCATGATGTTGTGGTCAAGGAGGTGGCAGCGGCAGCCACTGCATGGGGCTTCTTTCTCATTACTGACCACGGCATACCGTCACCTTTGATCCAGCAATTGCAGAAGGTAGGGCATGAGTTCTTTTTGCTCCCACAGCAGGAGAAAGAGGCCTATGCAAATGACCCAGCCAATGGGAGGTTTGATGGATATGGGACTAAGATGACCAAGAACCATGACGAGAAGGTCGAGTGGATCGACTATTTTTTCCATCTGACTGCCCCTCCATCTAAGGTCAACTATGAAATCTGGCCTAAGAACCCTCCATCTTACAGGGAAGTGAATGACCAATACAACAAGGAGATGCTAAGAGTAACAGACGAGTTACTGGAGGTGCTTTCAGAGGGTCTAGGGCTGGAAGCAAAGGTTCTGAAATCTCATGTCGGAAATGAAGAAGTAGAATTGGAAATGAAAATCAACATGTACCCTCCATGCCCACAACCCCAACTGGCCCTAGGAGTTGAGCCTCACACTGACATGTCAGCCCTAACCCTGCTAGTCTCCAATGATGTTCCAGGCCTTCAGCTGTGGGAAGATGACAACTGGGTTGCTGTCAATTACTTGTCAAATGCAGTTTTTGTTCACATTGGTGATCAGATGGAGGTCTTGAGCAATGGCAAGTACAAGAGTGTTCTTCACAGAAGCTTGGTGAACAAGGAACGTATGCGCATGTCGTGGGCTGTTTTTGTTGCTCCTCCTCACGAGGCTGTGATTGGGCCTCTGCCGGAGCTTCTGGACGAGAAAAACCCTGCCAAATACTCAACCAAGACATATGCTGAATACCGACACCGGAAATTCAACAAGCTCCCACAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00941 ko01100 ko01110 map00941 map01100 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

332

Amino Acids

37.47

Weight (kDa)

5.42

Isoelectric Point (pI)

39.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008121)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g26480
malus_domestica	MD15G1353800.v1.1
prunus_persica	Prupe.1G502300_v2.0.a1 Prupe.1G502500_v2.0.a1 Prupe.I003900_v2.0.a1 Prupe.I003900_v2.0.a1
pyrus_communis	pycom15g31720
rosa_chinensis	RchiOBHm_Chr6g0295241
rosa_laevigata	RLG00000011816
rosa_multiflora	Rmu_sc0007232.1_g000003 Rmu_sc0007232.1_g000004 Rmu_sc0010768.1_g000002
rosa_roxburghii	Rroxscaffold_171G00441440 Rroxscaffold_7G00172630 Rroxscaffold_7G00172650
rosa_rugosa	Rorug06G0249700 Rorug06G0249800.1 Rorug06G0249900
rosa_samantha	Rh6AG362800 Rh6BG370800 Rh6CG377100 Rh6DG363600
rosa_wichuraiana	Rw6G031660 Rw7G022060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	365
Acc16I	TGCGCA	1 cut(s)	848
AccB1I	GGYRCC	1 cut(s)	118
AccB7I	CCANNNNNTGG	2 cut(s)	186, 314
AciI	CCGC	2 cut(s)	36, 173
AclWI	GGATC	2 cut(s)	226, 383
AcoI	YGGCCR	1 cut(s)	27
AcsI	RAATTY	1 cut(s)	974
AcuI	CTGAAG	1 cut(s)	686
AfaI	GTAC	2 cut(s)	605, 803
AfiI	CCNNNNNNNGG	5 cut(s)	36, 186, 280, 314, 318
AflIII	ACRYGT	2 cut(s)	600, 657
AgsI	TTSAA	1 cut(s)	979
AjnI	CCWGG	1 cut(s)	694
AleI	CACNNNNGTG	1 cut(s)	768
AluBI	AGCT	6 cut(s)	49, 137, 706, 825, 910, 985
AluI	AGCT	6 cut(s)	49, 137, 706, 825, 910, 985
Alw26I	GTCTC	1 cut(s)	685
AlwI	GGATC	2 cut(s)	226, 383
AlwNI	CAGNNNCTG	1 cut(s)	182
Ama87I	CYCGRG	1 cut(s)	86
AoxI	GGCC	8 cut(s)	21, 27, 99, 291, 431, 630, 697, 896
ApeKI	GCWGC	3 cut(s)	82, 170, 176
ApoI	RAATTY	1 cut(s)	974
AspA2I	CCTAGG	1 cut(s)	634
AspLEI	GCGC	1 cut(s)	849
AspS9I	GGNCC	3 cut(s)	100, 631, 896
AsuHPI	GGTGA	3 cut(s)	216, 782, 841
AvaI	CYCGRG	1 cut(s)	86
AvrII	CCTAGG	1 cut(s)	634
BalI	TGGCCA	1 cut(s)	29
BanI	GGYRCC	1 cut(s)	118
BauI	CACGAG	1 cut(s)	881
BbvI	GCAGC	3 cut(s)	94, 182, 188
BccI	CCATC	6 cut(s)	38, 320, 399, 415, 454, 772
BceAI	ACGGC	1 cut(s)	229
BciT130I	CCWGG	1 cut(s)	696
BclI	TGATCA	1 cut(s)	772
BcoDI	GTCTC	1 cut(s)	685
BfaI	CTAG	5 cut(s)	104, 134, 530, 635, 677
BisI	GCNGC	4 cut(s)	83, 171, 174, 177
BlnI	CCTAGG	1 cut(s)	634
BlpI	GCTNAGC	1 cut(s)	138
BlsI	GCNGC	4 cut(s)	84, 172, 175, 178
Bme1390I	CCNGG	1 cut(s)	696
BmeT110I	CYCGRG	1 cut(s)	86
BmgT120I	GGNCC	3 cut(s)	100, 631, 896
BmiI	GGNNCC	1 cut(s)	120
BmrFI	CCNGG	1 cut(s)	696
BmrI	ACTGGG	1 cut(s)	733
BmsI	GCATC	1 cut(s)	474
BmuI	ACTGGG	1 cut(s)	733
BpmI	CTGGAG	1 cut(s)	530
Bpu1102I	GCTNAGC	1 cut(s)	138
BpuEI	CTTGAG	1 cut(s)	808
BsaJI	CCNNGG	3 cut(s)	24, 211, 634
BsaWI	WCCGGW	1 cut(s)	969
BsaXI	ACNNNNNCTCC	4 cut(s)	102, 132, 388, 418
Bsc4I	CCNNNNNNNGG	5 cut(s)	36, 186, 280, 314, 318
Bse1I	ACTGG	3 cut(s)	513, 633, 728
Bse3DI	GCAATG	1 cut(s)	799
BseBI	CCWGG	1 cut(s)	696
BseDI	CCNNGG	3 cut(s)	24, 211, 634
BseLI	CCNNNNNNNGG	5 cut(s)	36, 186, 280, 314, 318
BseMI	GCAATG	1 cut(s)	799
BseMII	CTCAG	1 cut(s)	152
BseNI	ACTGG	3 cut(s)	513, 633, 728
BseRI	GAGGAG	2 cut(s)	864, 867
BseXI	GCAGC	3 cut(s)	94, 182, 188
BseYI	CCCAGC	1 cut(s)	307
BsgI	GTGCAG	1 cut(s)	38
BshFI	GGCC	8 cut(s)	23, 29, 101, 293, 433, 632, 699, 898
BshNI	GGYRCC	1 cut(s)	118
BsiHKCI	CYCGRG	1 cut(s)	86
BsiSI	CCGG	2 cut(s)	905, 970
BslFI	GGGAC	1 cut(s)	349
BslI	CCNNNNNNNGG	5 cut(s)	36, 186, 280, 314, 318
BsmAI	GTCTC	1 cut(s)	685
BsmFI	GGGAC	1 cut(s)	349
BsnI	GGCC	8 cut(s)	23, 29, 101, 293, 433, 632, 699, 898
BsoBI	CYCGRG	1 cut(s)	86
Bsp143I	GATC	3 cut(s)	231, 375, 772
Bsp1720I	GCTNAGC	1 cut(s)	138
BspACI	CCGC	2 cut(s)	36, 173
BspANI	GGCC	8 cut(s)	23, 29, 101, 293, 433, 632, 699, 898
BspCNI	CTCAG	1 cut(s)	151
BspHI	TCATGA	1 cut(s)	145
BspLI	GGNNCC	1 cut(s)	120
BspPI	GGATC	2 cut(s)	226, 383
BspT107I	GGYRCC	1 cut(s)	118
BsrDI	GCAATG	1 cut(s)	799
BsrI	ACTGG	3 cut(s)	513, 633, 728
BssECI	CCNNGG	3 cut(s)	24, 211, 634
BssMI	GATC	3 cut(s)	231, 375, 772
BssSI	CACGAG	1 cut(s)	881
BssT1I	CCWWGG	2 cut(s)	24, 634
Bst2BI	CACGAG	1 cut(s)	881
Bst2UI	CCWGG	1 cut(s)	696
Bst4CI	ACNGT	2 cut(s)	118, 222
BstAPI	GCANNNNNTGC	1 cut(s)	182
BstC8I	GCNNGC	2 cut(s)	21, 38
BstDEI	CTNAG	5 cut(s)	138, 339, 411, 435, 488
BstDSI	CCRYGG	1 cut(s)	211
BstHHI	GCGC	1 cut(s)	849
BstKTI	GATC	3 cut(s)	234, 378, 775
BstMAI	GTCTC	1 cut(s)	685
BstMBI	GATC	3 cut(s)	231, 375, 772
BstMWI	GCNNNNNNNGC	4 cut(s)	46, 176, 182, 277
BstNI	CCWGG	1 cut(s)	696
BstNSI	RCATGY	3 cut(s)	604, 661, 853
BstSCI	CCNGG	1 cut(s)	694
BstV1I	GCAGC	3 cut(s)	94, 182, 188
BsuRI	GGCC	8 cut(s)	23, 29, 101, 293, 433, 632, 699, 898
BtgI	CCRYGG	1 cut(s)	211
BtsI	GCAGTG	1 cut(s)	180
BtsIMutI	CAGTG	2 cut(s)	180, 651
Cac8I	GCNNGC	2 cut(s)	21, 38
CaiI	CAGNNNCTG	1 cut(s)	182
CciI	TCATGA	1 cut(s)	145
CfoI	GCGC	1 cut(s)	849
Cfr13I	GGNCC	3 cut(s)	100, 631, 896
Csp6I	GTAC	2 cut(s)	604, 802
CviQI	GTAC	2 cut(s)	604, 802
DdeI	CTNAG	5 cut(s)	138, 339, 411, 435, 488
DpnI	GATC	3 cut(s)	233, 377, 774
DpnII	GATC	3 cut(s)	231, 375, 772
DrdI	GACNNNNNNGTC	1 cut(s)	365
DseDI	GACNNNNNNGTC	1 cut(s)	365
EaeI	YGGCCR	1 cut(s)	27
Eco130I	CCWWGG	2 cut(s)	24, 634
Eco147I	AGGCCT	3 cut(s)	23, 293, 699
Eco57I	CTGAAG	1 cut(s)	686
Eco88I	CYCGRG	1 cut(s)	86
EcoO109I	RGGNCCY	1 cut(s)	100
EcoRII	CCWGG	1 cut(s)	694
EcoT14I	CCWWGG	2 cut(s)	24, 634
ErhI	CCWWGG	2 cut(s)	24, 634
FaqI	GGGAC	1 cut(s)	349
FauI	CCCGC	1 cut(s)	29
FauNDI	CATATG	1 cut(s)	952
FbaI	TGATCA	1 cut(s)	772
Fnu4HI	GCNGC	4 cut(s)	83, 171, 174, 177
Fsp4HI	GCNGC	4 cut(s)	83, 171, 174, 177
FspAI	RTGCGCAY	1 cut(s)	848
FspBI	CTAG	5 cut(s)	104, 134, 530, 635, 677
FspI	TGCGCA	1 cut(s)	848
GlaI	GCGC	1 cut(s)	848
GluI	GCNGC	4 cut(s)	83, 171, 174, 177
GsaI	CCCAGC	1 cut(s)	311
GsuI	CTGGAG	1 cut(s)	530
HaeIII	GGCC	8 cut(s)	23, 29, 101, 293, 433, 632, 699, 898
HapII	CCGG	2 cut(s)	905, 970
HhaI	GCGC	1 cut(s)	849
Hin6I	GCGC	1 cut(s)	847
HinP1I	GCGC	1 cut(s)	847
HincII	GTYRAC	1 cut(s)	418
HindII	GTYRAC	1 cut(s)	418
HindIII	AAGCTT	1 cut(s)	823
HinfI	GANTC	1 cut(s)	111
HpaII	CCGG	2 cut(s)	905, 970
HphI	GGTGA	3 cut(s)	216, 782, 841
Hpy166II	GTNNAC	3 cut(s)	418, 763, 832
Hpy188I	TCNGA	5 cut(s)	396, 523, 552, 566, 777
Hpy188III	TCNNGA	4 cut(s)	146, 787, 881, 914
Hpy8I	GTNNAC	3 cut(s)	418, 763, 832
HpyAV	CCTTC	3 cut(s)	241, 358, 710
HpyCH4III	ACNGT	2 cut(s)	118, 222
HpyCH4IV	ACGT	1 cut(s)	841
HpyCH4V	TGCA	5 cut(s)	19, 185, 244, 299, 752
HpyF10VI	GCNNNNNNNGC	4 cut(s)	46, 176, 182, 277
HpyF3I	CTNAG	5 cut(s)	138, 339, 411, 435, 488
HpySE526I	ACGT	1 cut(s)	841
HspAI	GCGC	1 cut(s)	847
Ksp22I	TGATCA	1 cut(s)	772
Kzo9I	GATC	3 cut(s)	231, 375, 772
LmnI	GCTCC	4 cut(s)	276, 877, 907, 990
Lsp1109I	GCAGC	3 cut(s)	94, 182, 188
LweI	GCATC	1 cut(s)	474
MaeI	CTAG	5 cut(s)	104, 134, 530, 635, 677
MaeII	ACGT	1 cut(s)	841
MaeIII	GTNAC	4 cut(s)	112, 222, 493, 504
MalI	GATC	3 cut(s)	233, 377, 774
MboI	GATC	3 cut(s)	231, 375, 772
MboII	GAAGA	3 cut(s)	584, 725, 806
MfeI	CAATTG	1 cut(s)	239
MlsI	TGGCCA	1 cut(s)	29
MluCI	AATT	4 cut(s)	239, 581, 736, 974
MluNI	TGGCCA	1 cut(s)	29
MlyI	GAGTC	1 cut(s)	120
MmeI	TCCRAC	1 cut(s)	544
Mox20I	TGGCCA	1 cut(s)	29
MscI	TGGCCA	1 cut(s)	29
MslI	CAYNNNNRTG	2 cut(s)	656, 768
Msp20I	TGGCCA	1 cut(s)	29
MspA1I	CMGCKG	3 cut(s)	36, 173, 706
MspI	CCGG	2 cut(s)	905, 970
MspR9I	CCNGG	1 cut(s)	696
MunI	CAATTG	1 cut(s)	239
MvaI	CCWGG	1 cut(s)	696
MwoI	GCNNNNNNNGC	4 cut(s)	46, 176, 182, 277
NdeI	CATATG	1 cut(s)	952
NdeII	GATC	3 cut(s)	231, 375, 772
NlaIV	GGNNCC	1 cut(s)	120
NmuCI	GTSAC	2 cut(s)	112, 222
NsbI	TGCGCA	1 cut(s)	848
NspI	RCATGY	3 cut(s)	604, 661, 853
OliI	CACNNNNGTG	1 cut(s)	768
PagI	TCATGA	1 cut(s)	145
PceI	AGGCCT	3 cut(s)	23, 293, 699
PciI	ACATGT	2 cut(s)	600, 657
PcsI	WCGNNNNNNNCGW	2 cut(s)	366, 375
PflMI	CCANNNNNTGG	2 cut(s)	186, 314
PkrI	GCNGC	4 cut(s)	84, 172, 175, 178
PleI	GAGTC	1 cut(s)	119
PpsI	GAGTC	1 cut(s)	119
PscI	ACATGT	2 cut(s)	600, 657
Psp6I	CCWGG	1 cut(s)	694
PspFI	CCCAGC	1 cut(s)	307
PspGI	CCWGG	1 cut(s)	694
PspN4I	GGNNCC	1 cut(s)	120
PspPI	GGNCC	3 cut(s)	100, 631, 896
PstNI	CAGNNNCTG	1 cut(s)	182
PvuII	CAGCTG	1 cut(s)	706
RsaI	GTAC	2 cut(s)	605, 803
RsaNI	GTAC	2 cut(s)	604, 802
RseI	CAYNNNNRTG	2 cut(s)	656, 768
SatI	GCNGC	4 cut(s)	83, 171, 174, 177
Sau3AI	GATC	3 cut(s)	231, 375, 772
Sau96I	GGNCC	3 cut(s)	100, 631, 896
SchI	GAGTC	1 cut(s)	120
ScrFI	CCNGG	1 cut(s)	696
SfaNI	GCATC	1 cut(s)	474
SmiMI	CAYNNNNRTG	2 cut(s)	656, 768
SmlI	CTYRAG	1 cut(s)	787
SmoI	CTYRAG	1 cut(s)	787
Sse9I	AATT	4 cut(s)	239, 581, 736, 974
SseBI	AGGCCT	3 cut(s)	23, 293, 699
SsiI	CCGC	2 cut(s)	36, 173
SspMI	CTAG	5 cut(s)	104, 134, 530, 635, 677
StuI	AGGCCT	3 cut(s)	23, 293, 699
StyD4I	CCNGG	1 cut(s)	694
StyI	CCWWGG	2 cut(s)	24, 634
TaaI	ACNGT	2 cut(s)	118, 222
TaiI	ACGT	1 cut(s)	844
TaqI	TCGA	3 cut(s)	67, 369, 378
TasI	AATT	4 cut(s)	239, 581, 736, 974
TatI	WGTACW	1 cut(s)	801
TauI	GCSGC	1 cut(s)	176
TscAI	CASTG	2 cut(s)	187, 658
TseFI	GTSAC	2 cut(s)	112, 222
TseI	GCWGC	3 cut(s)	82, 170, 176
Tsp45I	GTSAC	2 cut(s)	112, 222
TspDTI	ATGAA	3 cut(s)	438, 585, 605
TspRI	CASTG	2 cut(s)	187, 658
Van91I	CCANNNNNTGG	2 cut(s)	186, 314
XapI	RAATTY	1 cut(s)	974
XceI	RCATGY	3 cut(s)	604, 661, 853
XmaJI	CCTAGG	1 cut(s)	634
XspI	CTAG	5 cut(s)	104, 134, 530, 635, 677

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.