Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0008121

Physical Location & Seq

Genomic Coordinates Reverse (-)

12910388 .. 12914412

Gene Structure 4025 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011816

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGCAGGTAGAGAGAGTTCAGGCATTGGCCCTTGGCAGGCTCAACGAGTTACCGGAAAAGTTCATCCGCCCCGCCCACGAGCAGCCGTTAAACACCAAGGCCGTGGAGGGAATAGCCGTGCCGGTAATTTCCCTAGCAAAGCCACACAACGTCATCGTCGAGGAAGTTTCCGAGGCAGCTGCCCAATGGGGCTTCTTTCTCATCATTGACCATGATATACCAGCTTCATTGATAGAGGAGTTACAGAAGGTTGGCAAGGAGTTTTATATGCTGCCACTGGAGGAGAAAGAGGCCTATGCAAATGACCCTGCTAGAGGCAGATTTGATGGGTATGGGACTCGGATGACCAAAAACCATGATGACAAGGTTGAGTGGATTGACTATTTCTTTCACCACACTGCTCCTCCATCCAAGGTTAACTATGATATCTGGCCTAAGAATCCTCCATCATACAGGCAAGTAAATGAAGAGTACAAGAAGGAAATGCTGAGAGTAACGGACAAGCTATTGGAGGTGCTTTCAGAGGGTCTAGGCCTGGATAGGAAGGTATTGAAATCCCATATGGGAGATGGAGAAGTGGAATTGGAAATGAAGATAAATATGTACCCGCCATGCGCACAACCCCAACTAGCCCTTGGCGTTGAGCCTCACACCGACATGTCCGCCCTCACCTTACTGGTTTCGAACGATGTTCCTGGCCTTCAGCTGTGGAAAGATGACAATTGGGTTGCTGTGAATTACCTGCCAAATGCAGTCTTTGTTAACATTGGTGATCAGATGGAGGTCTTGAGCAATGGTAAGTACAAGAGTGTTCTTCACAGGAGCTTGGTGAACAAGGAACGGTTGCGCATGTCATGGGCTGTGTTCATTGCGCCACCACATGAGGCTGTGATTGGGCCTCTGCCGGAGCTTGTGGACGAGCAAAATCCTGCCAAATACTCAACCAAAACATATGGTGAATACCAACACTGCAAATTCAACAAGATCCCACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00941 ko01100 ko01110 map00941 map01100 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

332

Amino Acids

37.72

Weight (kDa)

5.52

Isoelectric Point (pI)

38.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	40 - 147	3.9e-23	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	197 - 292	7.7e-31	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008121)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g26480
malus_domestica	MD15G1353800.v1.1
prunus_persica	Prupe.1G502300_v2.0.a1 Prupe.1G502500_v2.0.a1 Prupe.I003900_v2.0.a1 Prupe.I003900_v2.0.a1
pyrus_communis	pycom15g31720
rosa_chinensis	RchiOBHm_Chr6g0295241
rosa_laevigata	RLG00000011816
rosa_multiflora	Rmu_sc0007232.1_g000003 Rmu_sc0007232.1_g000004 Rmu_sc0010768.1_g000002
rosa_roxburghii	Rroxscaffold_171G00441440 Rroxscaffold_7G00172630 Rroxscaffold_7G00172650
rosa_rugosa	Rorug06G0249700 Rorug06G0249800.1 Rorug06G0249900
rosa_samantha	Rh6AG362800 Rh6BG370800 Rh6CG377100 Rh6DG363600
rosa_wichuraiana	Rw6G031660 Rw7G022060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	616, 848
Acc36I	ACCTGC	1 cut(s)	750
AciI	CCGC	4 cut(s)	67, 72, 608, 663
AclWI	GGATC	1 cut(s)	979
AcsI	RAATTY	1 cut(s)	974
AcuI	CTGAAG	1 cut(s)	686
AfaI	GTAC	3 cut(s)	473, 605, 803
AfiI	CCNNNNNNNGG	2 cut(s)	36, 314
AflIII	ACRYGT	1 cut(s)	657
AgsI	TTSAA	2 cut(s)	553, 979
AjnI	CCWGG	2 cut(s)	534, 694
AluBI	AGCT	6 cut(s)	179, 224, 505, 706, 825, 910
AluI	AGCT	6 cut(s)	179, 224, 505, 706, 825, 910
AlwI	GGATC	1 cut(s)	979
AoxI	GGCC	7 cut(s)	27, 99, 291, 431, 532, 697, 896
ApeKI	GCWGC	4 cut(s)	82, 176, 179, 271
ApoI	RAATTY	1 cut(s)	974
AspLEI	GCGC	3 cut(s)	617, 849, 874
AspS9I	GGNCC	2 cut(s)	28, 896
AsuHPI	GGTGA	5 cut(s)	383, 661, 782, 841, 968
AsuII	TTCGAA	1 cut(s)	683
BauI	CACGAG	1 cut(s)	77
BbvI	GCAGC	4 cut(s)	94, 166, 188, 258
BccI	CCATC	5 cut(s)	320, 415, 454, 563, 772
BceAI	ACGGC	3 cut(s)	70, 86, 101
BcgI	CGANNNNNNTGC	2 cut(s)	161, 195
BciT130I	CCWGG	2 cut(s)	536, 696
BclI	TGATCA	1 cut(s)	772
BfaI	CTAG	4 cut(s)	134, 312, 530, 629
BfuAI	ACCTGC	1 cut(s)	750
BisI	GCNGC	4 cut(s)	83, 177, 180, 272
BlsI	GCNGC	4 cut(s)	84, 178, 181, 273
Bme1390I	CCNGG	2 cut(s)	536, 696
BmgT120I	GGNCC	2 cut(s)	28, 896
BmrFI	CCNGG	2 cut(s)	536, 696
BpmI	CTGGAG	1 cut(s)	299
Bpu14I	TTCGAA	1 cut(s)	683
BpuEI	CTTGAG	1 cut(s)	808
BsaJI	CCNNGG	6 cut(s)	31, 96, 102, 171, 411, 634
BsaWI	WCCGGW	1 cut(s)	52
BsaXI	ACNNNNNCTCC	2 cut(s)	388, 418
Bsc4I	CCNNNNNNNGG	2 cut(s)	36, 314
Bse118I	RCCGGY	1 cut(s)	121
Bse1I	ACTGG	2 cut(s)	282, 681
Bse3DI	GCAATG	2 cut(s)	799, 867
BseBI	CCWGG	2 cut(s)	536, 696
BseDI	CCNNGG	6 cut(s)	31, 96, 102, 171, 411, 634
BseGI	GGATG	3 cut(s)	63, 348, 407
BseLI	CCNNNNNNNGG	2 cut(s)	36, 314
BseMI	GCAATG	2 cut(s)	799, 867
BseMII	CTCAG	1 cut(s)	479
BseNI	ACTGG	2 cut(s)	282, 681
BseRI	GAGGAG	3 cut(s)	251, 296, 393
BseXI	GCAGC	4 cut(s)	94, 166, 188, 258
BshFI	GGCC	7 cut(s)	29, 101, 293, 433, 534, 699, 898
BsiSI	CCGG	3 cut(s)	53, 122, 905
BslFI	GGGAC	1 cut(s)	349
BslI	CCNNNNNNNGG	2 cut(s)	36, 314
BsmFI	GGGAC	1 cut(s)	349
BsnI	GGCC	7 cut(s)	29, 101, 293, 433, 534, 699, 898
Bsp119I	TTCGAA	1 cut(s)	683
Bsp143I	GATC	2 cut(s)	772, 984
BspACI	CCGC	4 cut(s)	67, 72, 608, 663
BspANI	GGCC	7 cut(s)	29, 101, 293, 433, 534, 699, 898
BspCNI	CTCAG	1 cut(s)	480
BspMI	ACCTGC	1 cut(s)	750
BspPI	GGATC	1 cut(s)	979
BspT104I	TTCGAA	1 cut(s)	683
BsrDI	GCAATG	2 cut(s)	799, 867
BsrFI	RCCGGY	1 cut(s)	121
BsrI	ACTGG	2 cut(s)	282, 681
BssAI	RCCGGY	1 cut(s)	121
BssECI	CCNNGG	6 cut(s)	31, 96, 102, 171, 411, 634
BssMI	GATC	2 cut(s)	772, 984
BssSI	CACGAG	1 cut(s)	77
BssT1I	CCWWGG	4 cut(s)	31, 96, 411, 634
Bst2BI	CACGAG	1 cut(s)	77
Bst2UI	CCWGG	2 cut(s)	536, 696
Bst4CI	ACNGT	2 cut(s)	843, 993
Bst6I	CTCTTC	1 cut(s)	462
BstBI	TTCGAA	1 cut(s)	683
BstC8I	GCNNGC	1 cut(s)	38
BstDEI	CTNAG	2 cut(s)	435, 488
BstDSI	CCRYGG	1 cut(s)	102
BstENI	CCTNNNNNAGG	1 cut(s)	312
BstF5I	GGATG	3 cut(s)	63, 348, 407
BstHHI	GCGC	3 cut(s)	617, 849, 874
BstKTI	GATC	2 cut(s)	775, 987
BstMBI	GATC	2 cut(s)	772, 984
BstNI	CCWGG	2 cut(s)	536, 696
BstNSI	RCATGY	2 cut(s)	661, 853
BstSCI	CCNGG	2 cut(s)	534, 694
BstV1I	GCAGC	4 cut(s)	94, 166, 188, 258
BstX2I	RGATCY	1 cut(s)	984
BstXI	CCANNNNNNTGG	1 cut(s)	103
BstYI	RGATCY	1 cut(s)	984
BsuRI	GGCC	7 cut(s)	29, 101, 293, 433, 534, 699, 898
BtgI	CCRYGG	1 cut(s)	102
BtsCI	GGATG	3 cut(s)	63, 348, 407
BtsI	GCAGTG	2 cut(s)	396, 967
BtsIMutI	CAGTG	3 cut(s)	275, 396, 967
BveI	ACCTGC	1 cut(s)	750
Cac8I	GCNNGC	1 cut(s)	38
CfoI	GCGC	3 cut(s)	617, 849, 874
Cfr10I	RCCGGY	1 cut(s)	121
Cfr13I	GGNCC	2 cut(s)	28, 896
Csp6I	GTAC	3 cut(s)	472, 604, 802
CviAII	CATG	7 cut(s)	212, 356, 612, 658, 850, 855, 881
CviQI	GTAC	3 cut(s)	472, 604, 802
DdeI	CTNAG	2 cut(s)	435, 488
DpnI	GATC	2 cut(s)	774, 986
DpnII	GATC	2 cut(s)	772, 984
Eam1104I	CTCTTC	1 cut(s)	462
EarI	CTCTTC	1 cut(s)	462
EciI	GGCGGA	2 cut(s)	56, 652
Eco130I	CCWWGG	4 cut(s)	31, 96, 411, 634
Eco147I	AGGCCT	2 cut(s)	293, 534
Eco32I	GATATC	1 cut(s)	427
Eco57I	CTGAAG	1 cut(s)	686
EcoNI	CCTNNNNNAGG	1 cut(s)	312
EcoRII	CCWGG	2 cut(s)	534, 694
EcoRV	GATATC	1 cut(s)	427
EcoT14I	CCWWGG	4 cut(s)	31, 96, 411, 634
ErhI	CCWWGG	4 cut(s)	31, 96, 411, 634
FaeI	CATG	7 cut(s)	215, 359, 615, 661, 853, 858, 884
FaqI	GGGAC	1 cut(s)	349
FatI	CATG	7 cut(s)	211, 355, 611, 657, 849, 854, 880
FauI	CCCGC	2 cut(s)	79, 615
FauNDI	CATATG	2 cut(s)	561, 952
FbaI	TGATCA	1 cut(s)	772
Fnu4HI	GCNGC	4 cut(s)	83, 177, 180, 272
FokI	GGATG	3 cut(s)	50, 355, 394
Fsp4HI	GCNGC	4 cut(s)	83, 177, 180, 272
FspAI	RTGCGCAY	1 cut(s)	616
FspBI	CTAG	4 cut(s)	134, 312, 530, 629
FspI	TGCGCA	2 cut(s)	616, 848
GlaI	GCGC	3 cut(s)	616, 848, 873
GluI	GCNGC	4 cut(s)	83, 177, 180, 272
GsuI	CTGGAG	1 cut(s)	299
HaeIII	GGCC	7 cut(s)	29, 101, 293, 433, 534, 699, 898
HapII	CCGG	3 cut(s)	53, 122, 905
HhaI	GCGC	3 cut(s)	617, 849, 874
Hin1II	CATG	7 cut(s)	215, 359, 615, 661, 853, 858, 884
Hin6I	GCGC	3 cut(s)	615, 847, 872
HinP1I	GCGC	3 cut(s)	615, 847, 872
HincII	GTYRAC	2 cut(s)	418, 763
HindII	GTYRAC	2 cut(s)	418, 763
HinfI	GANTC	2 cut(s)	337, 439
HpaI	GTTAAC	2 cut(s)	418, 763
HpaII	CCGG	3 cut(s)	53, 122, 905
HphI	GGTGA	5 cut(s)	383, 661, 782, 841, 968
Hpy166II	GTNNAC	4 cut(s)	418, 763, 832, 916
Hpy188I	TCNGA	4 cut(s)	172, 342, 523, 777
Hpy188III	TCNNGA	1 cut(s)	787
Hpy8I	GTNNAC	4 cut(s)	418, 763, 832, 916
Hpy99I	CGWCG	1 cut(s)	161
HpyAV	CCTTC	4 cut(s)	241, 472, 538, 710
HpyCH4III	ACNGT	2 cut(s)	843, 993
HpyCH4IV	ACGT	1 cut(s)	150
HpyCH4V	TGCA	4 cut(s)	4, 299, 752, 972
HpyF3I	CTNAG	2 cut(s)	435, 488
HpySE526I	ACGT	1 cut(s)	150
Hsp92II	CATG	7 cut(s)	215, 359, 615, 661, 853, 858, 884
HspAI	GCGC	3 cut(s)	615, 847, 872
Ksp22I	TGATCA	1 cut(s)	772
KspAI	GTTAAC	2 cut(s)	418, 763
Kzo9I	GATC	2 cut(s)	772, 984
LmnI	GCTCC	3 cut(s)	406, 822, 907
Lsp1109I	GCAGC	4 cut(s)	94, 166, 188, 258
MaeI	CTAG	4 cut(s)	134, 312, 530, 629
MaeII	ACGT	1 cut(s)	150
MaeIII	GTNAC	3 cut(s)	48, 240, 493
MalI	GATC	2 cut(s)	774, 986
MboI	GATC	2 cut(s)	772, 984
MboII	GAAGA	3 cut(s)	479, 604, 806
MfeI	CAATTG	1 cut(s)	721
MflI	RGATCY	1 cut(s)	984
MluCI	AATT	5 cut(s)	126, 581, 721, 736, 974
MlyI	GAGTC	1 cut(s)	331
MseI	TTAA	3 cut(s)	89, 417, 762
MslI	CAYNNNNRTG	1 cut(s)	656
MspA1I	CMGCKG	2 cut(s)	179, 706
MspI	CCGG	3 cut(s)	53, 122, 905
MspR9I	CCNGG	2 cut(s)	536, 696
MunI	CAATTG	1 cut(s)	721
MvaI	CCWGG	2 cut(s)	536, 696
NdeI	CATATG	2 cut(s)	561, 952
NdeII	GATC	2 cut(s)	772, 984
NlaIII	CATG	7 cut(s)	215, 359, 615, 661, 853, 858, 884
NsbI	TGCGCA	2 cut(s)	616, 848
NspI	RCATGY	2 cut(s)	661, 853
NspV	TTCGAA	1 cut(s)	683
PceI	AGGCCT	2 cut(s)	293, 534
PciI	ACATGT	1 cut(s)	657
PcsI	WCGNNNNNNNCGW	1 cut(s)	156
PfeI	GAWTC	1 cut(s)	439
PkrI	GCNGC	4 cut(s)	84, 178, 181, 273
PleI	GAGTC	1 cut(s)	331
PpsI	GAGTC	1 cut(s)	331
PscI	ACATGT	1 cut(s)	657
Psp6I	CCWGG	2 cut(s)	534, 694
PspGI	CCWGG	2 cut(s)	534, 694
PspPI	GGNCC	2 cut(s)	28, 896
PsrI	GAACNNNNNNTAC	1 cut(s)	32
PsuI	RGATCY	1 cut(s)	984
PvuII	CAGCTG	2 cut(s)	179, 706
RsaI	GTAC	3 cut(s)	473, 605, 803
RsaNI	GTAC	3 cut(s)	472, 604, 802
RseI	CAYNNNNRTG	1 cut(s)	656
SaqAI	TTAA	3 cut(s)	89, 417, 762
SatI	GCNGC	4 cut(s)	83, 177, 180, 272
Sau3AI	GATC	2 cut(s)	772, 984
Sau96I	GGNCC	2 cut(s)	28, 896
SchI	GAGTC	1 cut(s)	331
ScrFI	CCNGG	2 cut(s)	536, 696
SfuI	TTCGAA	1 cut(s)	683
SmiMI	CAYNNNNRTG	1 cut(s)	656
SmlI	CTYRAG	1 cut(s)	787
SmoI	CTYRAG	1 cut(s)	787
Sse9I	AATT	5 cut(s)	126, 581, 721, 736, 974
SseBI	AGGCCT	2 cut(s)	293, 534
SsiI	CCGC	4 cut(s)	67, 72, 608, 663
SspMI	CTAG	4 cut(s)	134, 312, 530, 629
StuI	AGGCCT	2 cut(s)	293, 534
StyD4I	CCNGG	2 cut(s)	534, 694
StyI	CCWWGG	4 cut(s)	31, 96, 411, 634
TaaI	ACNGT	2 cut(s)	843, 993
TaiI	ACGT	1 cut(s)	153
TaqI	TCGA	2 cut(s)	159, 683
TasI	AATT	5 cut(s)	126, 581, 721, 736, 974
TatI	WGTACW	2 cut(s)	471, 801
TfiI	GAWTC	1 cut(s)	439
Tru1I	TTAA	3 cut(s)	89, 417, 762
Tru9I	TTAA	3 cut(s)	89, 417, 762
TscAI	CASTG	3 cut(s)	282, 403, 974
TseI	GCWGC	4 cut(s)	82, 176, 179, 271
TspDTI	ATGAA	5 cut(s)	52, 216, 480, 605, 856
TspGWI	ACGGA	1 cut(s)	512
TspRI	CASTG	3 cut(s)	282, 403, 974
XagI	CCTNNNNNAGG	1 cut(s)	312
XapI	RAATTY	1 cut(s)	974
XceI	RCATGY	2 cut(s)	661, 853
XcmI	CCANNNNNNNNNTGG	2 cut(s)	566, 632
XspI	CTAG	4 cut(s)	134, 312, 530, 629

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.