Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0008121

Physical Location & Seq

Genomic Coordinates Forward (+)

56095575 .. 56102066

Gene Structure 6492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG363600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGTACATGCACGTAGCACTACTTTGCTTAGTAATTGTCCTTGCAAAATTAATGGATGTAGAGAGAGTCCAAGCCTTGGCCTTGCGTAGGCTCAACGAGCTCCCAGCAAAGTTCATCCGCCCGACTCATGAGCAACCCGAGAACAGCAAGGCCTTGGAGGGAGTCACCGTGCCGGTGATCTCCCTGGCTAAACCACACGACATTGTCGTGAAGGAAGTGGCTGAGGCAGCCTTTGAGTGGGGCTTCTTTCTCATCACTGACCATGGCATACCGGCTTCTTTGATAGAGCAGTTACAGAAGGTGGGCAAAGAGTTCTTTATGCTGCCACAGGAGGAAAAAGAGGCTTATGCAAATGAACCTGCTAATGGCAAATTTGATGGGTATGGGACCACGATGACTAAGAACCTTGATGAAAAGGTTGAGTGGATTGACTATTTCTTTCACGTCATTGCTCCTCCATCTAAGGTTAACTATGAAATCTGGCCTAAGAATCCTCCATCATACAGGGAAGTAAATGAAGAATACAGTAGGGAAATGCTGAGAGTAACAGACAAGCTACTGGAGTTGCTTTCCGAGAGTCTAGGCCTGGACAAGAAGGTACTAAAATCCCATGTCGGAGGTGACAAAATAGAGCTGGAAATGAAGATAAACATGTACCCGCCATGCCCGCAGCCGCAACTGGCTCTCGGAGTTGAGCCTCACACAGACATGTCGGCCCTCACCTTGCTGGTTTCGAACGATGTTCCTGGTCTTCAGTTGTGGAAAGATGGCAACTGGGTTTCAGTAAATTACCTAACCAAGGCAGGCGCAATCTTCGTTCACATTGGTGATCAGATGGAGGTGTTGAGCAATGGCAAGTACAAGAGTGTTCTTCACCGGAGCTTGGTGAACAAGGAACGGTTGCGCATGTCGTGGGCTGTGTTCGTTGCGCCGCCGCATGAGGCGGTCATTGGGCCTCTGCCAGAGCTTTTGGATGAACAAAACCCTGCCAAATACTCTACCAAAACATATGCTGAATACCGGCACCGCAAATTCAACAAAATCCCACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00941 ko01100 ko01110 map00941 map01100 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

350

Amino Acids

39.83

Weight (kDa)

6.04

Isoelectric Point (pI)

42.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	57 - 164	1.9e-24	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	214 - 311	4.9e-29	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008121)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g26480
malus_domestica	MD15G1353800.v1.1
prunus_persica	Prupe.1G502300_v2.0.a1 Prupe.1G502500_v2.0.a1 Prupe.I003900_v2.0.a1 Prupe.I003900_v2.0.a1
pyrus_communis	pycom15g31720
rosa_chinensis	RchiOBHm_Chr6g0295241
rosa_laevigata	RLG00000011816
rosa_multiflora	Rmu_sc0007232.1_g000003 Rmu_sc0007232.1_g000004 Rmu_sc0010768.1_g000002
rosa_roxburghii	Rroxscaffold_171G00441440 Rroxscaffold_7G00172630 Rroxscaffold_7G00172650
rosa_rugosa	Rorug06G0249700 Rorug06G0249800.1 Rorug06G0249900
rosa_samantha	Rh6AG362800 Rh6BG370800 Rh6CG377100 Rh6DG363600
rosa_wichuraiana	Rw6G031660 Rw7G022060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	905
Acc36I	ACCTGC	1 cut(s)	367
AccB1I	GGYRCC	1 cut(s)	1023
AccB7I	CCANNNNNTGG	1 cut(s)	76
AciI	CCGC	8 cut(s)	118, 659, 668, 674, 932, 935, 944, 1027
AcsI	RAATTY	2 cut(s)	371, 1031
AcuI	CTGAAG	1 cut(s)	737
AfaI	GTAC	4 cut(s)	5, 600, 656, 860
AfiI	CCNNNNNNNGG	6 cut(s)	76, 87, 237, 365, 799, 883
AflIII	ACRYGT	2 cut(s)	651, 708
AgsI	TTSAA	1 cut(s)	1036
AjiI	CACGTC	1 cut(s)	445
AjnI	CCWGG	3 cut(s)	183, 585, 745
AleI	CACNNNNGTG	1 cut(s)	825
AluBI	AGCT	5 cut(s)	100, 556, 634, 882, 967
AluI	AGCT	5 cut(s)	100, 556, 634, 882, 967
Alw21I	GWGCWC	1 cut(s)	102
Ama87I	CYCGRG	1 cut(s)	137
AoxI	GGCC	6 cut(s)	78, 150, 482, 583, 714, 953
ApeKI	GCWGC	3 cut(s)	227, 322, 670
ApoI	RAATTY	2 cut(s)	371, 1031
AseI	ATTAAT	1 cut(s)	50
AspLEI	GCGC	3 cut(s)	809, 906, 931
AspS9I	GGNCC	3 cut(s)	387, 715, 953
AsuHPI	GGTGA	7 cut(s)	157, 187, 632, 712, 839, 866, 898
AsuII	TTCGAA	1 cut(s)	734
AvaI	CYCGRG	1 cut(s)	137
AvaII	GGWCC	1 cut(s)	387
BanI	GGYRCC	1 cut(s)	1023
BanII	GRGCYC	1 cut(s)	102
BbsI	GAAGAC	1 cut(s)	743
Bbv12I	GWGCWC	1 cut(s)	102
BbvCI	CCTCAGC	1 cut(s)	222
BbvI	GCAGC	3 cut(s)	239, 309, 682
BccI	CCATC	5 cut(s)	371, 466, 505, 761, 829
BciT130I	CCWGG	3 cut(s)	185, 587, 747
BclI	TGATCA	1 cut(s)	829
BfaI	CTAG	1 cut(s)	581
BfuAI	ACCTGC	1 cut(s)	367
BisI	GCNGC	6 cut(s)	228, 323, 671, 674, 932, 935
BlsI	GCNGC	6 cut(s)	229, 324, 672, 675, 933, 936
Bme1390I	CCNGG	3 cut(s)	185, 587, 747
Bme18I	GGWCC	1 cut(s)	387
BmeT110I	CYCGRG	1 cut(s)	137
BmgBI	CACGTC	1 cut(s)	445
BmgT120I	GGNCC	3 cut(s)	387, 715, 953
BmiI	GGNNCC	2 cut(s)	388, 1025
BmrFI	CCNGG	3 cut(s)	185, 587, 747
BmrI	ACTGGG	1 cut(s)	784
BmuI	ACTGGG	1 cut(s)	784
BpiI	GAAGAC	1 cut(s)	743
BpmI	CTGGAG	1 cut(s)	581
Bpu10I	CCTNAGC	1 cut(s)	222
Bpu14I	TTCGAA	1 cut(s)	734
BsaAI	YACGTR	1 cut(s)	13
BsaJI	CCNNGG	5 cut(s)	75, 153, 183, 262, 798
BsaWI	WCCGGW	1 cut(s)	876
BsaXI	ACNNNNNCTCC	2 cut(s)	153, 183
Bsc4I	CCNNNNNNNGG	6 cut(s)	76, 87, 237, 365, 799, 883
Bse118I	RCCGGY	3 cut(s)	172, 271, 1020
Bse1I	ACTGG	3 cut(s)	564, 684, 779
Bse3DI	GCAATG	2 cut(s)	447, 856
BseBI	CCWGG	3 cut(s)	185, 587, 747
BseDI	CCNNGG	5 cut(s)	75, 153, 183, 262, 798
BseGI	GGATG	3 cut(s)	61, 114, 979
BseLI	CCNNNNNNNGG	6 cut(s)	76, 87, 237, 365, 799, 883
BseMI	GCAATG	2 cut(s)	447, 856
BseMII	CTCAG	2 cut(s)	213, 530
BseNI	ACTGG	3 cut(s)	564, 684, 779
BseRI	GAGGAG	1 cut(s)	444
BseXI	GCAGC	3 cut(s)	239, 309, 682
BseYI	CCCAGC	1 cut(s)	103
BshFI	GGCC	6 cut(s)	80, 152, 484, 585, 716, 955
BshNI	GGYRCC	1 cut(s)	1023
BsiHKAI	GWGCWC	1 cut(s)	102
BsiHKCI	CYCGRG	1 cut(s)	137
BsiSI	CCGG	4 cut(s)	173, 272, 877, 1021
BslFI	GGGAC	1 cut(s)	400
BslI	CCNNNNNNNGG	6 cut(s)	76, 87, 237, 365, 799, 883
BsmFI	GGGAC	1 cut(s)	400
BsnI	GGCC	6 cut(s)	80, 152, 484, 585, 716, 955
BsoBI	CYCGRG	1 cut(s)	137
Bsp119I	TTCGAA	1 cut(s)	734
Bsp1286I	GDGCHC	1 cut(s)	102
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	2 cut(s)	177, 829
Bsp19I	CCATGG	1 cut(s)	262
BspACI	CCGC	8 cut(s)	118, 659, 668, 674, 932, 935, 944, 1027
BspANI	GGCC	6 cut(s)	80, 152, 484, 585, 716, 955
BspCNI	CTCAG	2 cut(s)	214, 531
BspHI	TCATGA	1 cut(s)	127
BspLI	GGNNCC	2 cut(s)	388, 1025
BspMI	ACCTGC	1 cut(s)	367
BspT104I	TTCGAA	1 cut(s)	734
BspT107I	GGYRCC	1 cut(s)	1023
BsrDI	GCAATG	2 cut(s)	447, 856
BsrFI	RCCGGY	3 cut(s)	172, 271, 1020
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	3 cut(s)	564, 684, 779
BssAI	RCCGGY	3 cut(s)	172, 271, 1020
BssECI	CCNNGG	5 cut(s)	75, 153, 183, 262, 798
BssMI	GATC	2 cut(s)	177, 829
BssT1I	CCWWGG	4 cut(s)	75, 153, 262, 798
Bst2UI	CCWGG	3 cut(s)	185, 587, 747
Bst4CI	ACNGT	4 cut(s)	169, 527, 900, 1050
BstAUI	TGTACA	1 cut(s)	3
BstBAI	YACGTR	1 cut(s)	13
BstBI	TTCGAA	1 cut(s)	734
BstC8I	GCNNGC	2 cut(s)	668, 805
BstDEI	CTNAG	6 cut(s)	28, 222, 399, 462, 486, 539
BstDSI	CCRYGG	1 cut(s)	262
BstENI	CCTNNNNNAGG	2 cut(s)	85, 797
BstF5I	GGATG	3 cut(s)	61, 114, 979
BstHHI	GCGC	3 cut(s)	809, 906, 931
BstKTI	GATC	2 cut(s)	180, 832
BstMBI	GATC	2 cut(s)	177, 829
BstMWI	GCNNNNNNNGC	3 cut(s)	97, 227, 667
BstNI	CCWGG	3 cut(s)	185, 587, 747
BstNSI	RCATGY	4 cut(s)	10, 655, 712, 910
BstSCI	CCNGG	3 cut(s)	183, 585, 745
BstV1I	GCAGC	3 cut(s)	239, 309, 682
BstV2I	GAAGAC	1 cut(s)	743
BsuRI	GGCC	6 cut(s)	80, 152, 484, 585, 716, 955
BtgI	CCRYGG	1 cut(s)	262
BtrI	CACGTC	1 cut(s)	445
BtsCI	GGATG	3 cut(s)	61, 114, 979
BtsIMutI	CAGTG	1 cut(s)	255
BveI	ACCTGC	1 cut(s)	367
Cac8I	GCNNGC	2 cut(s)	668, 805
CciI	TCATGA	1 cut(s)	127
CfoI	GCGC	3 cut(s)	809, 906, 931
Cfr10I	RCCGGY	3 cut(s)	172, 271, 1020
Cfr13I	GGNCC	3 cut(s)	387, 715, 953
Csp6I	GTAC	4 cut(s)	4, 599, 655, 859
CviAII	CATG	9 cut(s)	7, 128, 263, 611, 652, 663, 709, 907, 938
CviQI	GTAC	4 cut(s)	4, 599, 655, 859
DdeI	CTNAG	6 cut(s)	28, 222, 399, 462, 486, 539
DpnI	GATC	2 cut(s)	179, 831
DpnII	GATC	2 cut(s)	177, 829
EciI	GGCGGA	1 cut(s)	107
Ecl136II	GAGCTC	1 cut(s)	100
Eco130I	CCWWGG	4 cut(s)	75, 153, 262, 798
Eco147I	AGGCCT	2 cut(s)	152, 585
Eco24I	GRGCYC	1 cut(s)	102
Eco47I	GGWCC	1 cut(s)	387
Eco53kI	GAGCTC	1 cut(s)	100
Eco57I	CTGAAG	1 cut(s)	737
Eco88I	CYCGRG	1 cut(s)	137
EcoICRI	GAGCTC	1 cut(s)	100
EcoNI	CCTNNNNNAGG	2 cut(s)	85, 797
EcoRII	CCWGG	3 cut(s)	183, 585, 745
EcoT14I	CCWWGG	4 cut(s)	75, 153, 262, 798
EcoT38I	GRGCYC	1 cut(s)	102
ErhI	CCWWGG	4 cut(s)	75, 153, 262, 798
FaeI	CATG	9 cut(s)	10, 131, 266, 614, 655, 666, 712, 910, 941
FaqI	GGGAC	1 cut(s)	400
FatI	CATG	9 cut(s)	6, 127, 262, 610, 651, 662, 708, 906, 937
FauI	CCCGC	2 cut(s)	666, 675
FauNDI	CATATG	1 cut(s)	1009
FbaI	TGATCA	1 cut(s)	829
Fnu4HI	GCNGC	6 cut(s)	228, 323, 671, 674, 932, 935
FokI	GGATG	3 cut(s)	68, 101, 986
FriOI	GRGCYC	1 cut(s)	102
Fsp4HI	GCNGC	6 cut(s)	228, 323, 671, 674, 932, 935
FspBI	CTAG	1 cut(s)	581
FspI	TGCGCA	1 cut(s)	905
GlaI	GCGC	3 cut(s)	808, 905, 930
GluI	GCNGC	6 cut(s)	228, 323, 671, 674, 932, 935
GsaI	CCCAGC	1 cut(s)	107
GsuI	CTGGAG	1 cut(s)	581
HaeIII	GGCC	6 cut(s)	80, 152, 484, 585, 716, 955
HapII	CCGG	4 cut(s)	173, 272, 877, 1021
HhaI	GCGC	3 cut(s)	809, 906, 931
Hin1II	CATG	9 cut(s)	10, 131, 266, 614, 655, 666, 712, 910, 941
Hin6I	GCGC	3 cut(s)	807, 904, 929
HinP1I	GCGC	3 cut(s)	807, 904, 929
HincII	GTYRAC	1 cut(s)	469
HindII	GTYRAC	1 cut(s)	469
HinfI	GANTC	5 cut(s)	66, 124, 162, 490, 577
HpaI	GTTAAC	1 cut(s)	469
HpaII	CCGG	4 cut(s)	173, 272, 877, 1021
HphI	GGTGA	7 cut(s)	157, 187, 632, 712, 839, 866, 898
Hpy166II	GTNNAC	3 cut(s)	469, 820, 889
Hpy188I	TCNGA	4 cut(s)	574, 617, 689, 834
Hpy188III	TCNNGA	2 cut(s)	128, 208
Hpy8I	GTNNAC	3 cut(s)	469, 820, 889
HpyAV	CCTTC	3 cut(s)	205, 292, 589
HpyCH4III	ACNGT	4 cut(s)	169, 527, 900, 1050
HpyCH4IV	ACGT	2 cut(s)	12, 444
HpyCH4V	TGCA	3 cut(s)	10, 44, 350
HpyF10VI	GCNNNNNNNGC	3 cut(s)	97, 227, 667
HpyF3I	CTNAG	6 cut(s)	28, 222, 399, 462, 486, 539
HpySE526I	ACGT	2 cut(s)	12, 444
Hsp92II	CATG	9 cut(s)	10, 131, 266, 614, 655, 666, 712, 910, 941
HspAI	GCGC	3 cut(s)	807, 904, 929
Ksp22I	TGATCA	1 cut(s)	829
KspAI	GTTAAC	1 cut(s)	469
Kzo9I	GATC	2 cut(s)	177, 829
LmnI	GCTCC	3 cut(s)	105, 457, 879
Lsp1109I	GCAGC	3 cut(s)	239, 309, 682
MaeI	CTAG	1 cut(s)	581
MaeII	ACGT	2 cut(s)	12, 444
MaeIII	GTNAC	4 cut(s)	163, 291, 544, 620
MalI	GATC	2 cut(s)	179, 831
MboI	GATC	2 cut(s)	177, 829
MboII	GAAGA	5 cut(s)	530, 655, 743, 805, 863
MhlI	GDGCHC	1 cut(s)	102
MluCI	AATT	5 cut(s)	33, 47, 371, 787, 1031
MlyI	GAGTC	4 cut(s)	75, 118, 171, 586
MmeI	TCCRAC	1 cut(s)	595
MseI	TTAA	2 cut(s)	50, 468
MslI	CAYNNNNRTG	3 cut(s)	206, 707, 825
MspI	CCGG	4 cut(s)	173, 272, 877, 1021
MspR9I	CCNGG	3 cut(s)	185, 587, 747
MvaI	CCWGG	3 cut(s)	185, 587, 747
MwoI	GCNNNNNNNGC	3 cut(s)	97, 227, 667
NcoI	CCATGG	1 cut(s)	262
NdeI	CATATG	1 cut(s)	1009
NdeII	GATC	2 cut(s)	177, 829
NlaIII	CATG	9 cut(s)	10, 131, 266, 614, 655, 666, 712, 910, 941
NlaIV	GGNNCC	2 cut(s)	388, 1025
NmuCI	GTSAC	2 cut(s)	163, 620
NsbI	TGCGCA	1 cut(s)	905
NspI	RCATGY	4 cut(s)	10, 655, 712, 910
NspV	TTCGAA	1 cut(s)	734
OliI	CACNNNNGTG	1 cut(s)	825
PagI	TCATGA	1 cut(s)	127
PceI	AGGCCT	2 cut(s)	152, 585
PciI	ACATGT	2 cut(s)	651, 708
PcsI	WCGNNNNNNNCGW	1 cut(s)	204
PfeI	GAWTC	1 cut(s)	490
PflFI	GACNNNGTC	1 cut(s)	203
PflMI	CCANNNNNTGG	1 cut(s)	76
PkrI	GCNGC	6 cut(s)	229, 324, 672, 675, 933, 936
PleI	GAGTC	4 cut(s)	74, 118, 170, 585
PpsI	GAGTC	4 cut(s)	74, 118, 170, 585
Ppu21I	YACGTR	1 cut(s)	13
PscI	ACATGT	2 cut(s)	651, 708
PshBI	ATTAAT	1 cut(s)	50
Psp124BI	GAGCTC	1 cut(s)	102
Psp6I	CCWGG	3 cut(s)	183, 585, 745
PspFI	CCCAGC	1 cut(s)	103
PspGI	CCWGG	3 cut(s)	183, 585, 745
PspN4I	GGNNCC	2 cut(s)	388, 1025
PspPI	GGNCC	3 cut(s)	387, 715, 953
PsyI	GACNNNGTC	1 cut(s)	203
RsaI	GTAC	4 cut(s)	5, 600, 656, 860
RsaNI	GTAC	4 cut(s)	4, 599, 655, 859
RseI	CAYNNNNRTG	3 cut(s)	206, 707, 825
SacI	GAGCTC	1 cut(s)	102
SaqAI	TTAA	2 cut(s)	50, 468
SatI	GCNGC	6 cut(s)	228, 323, 671, 674, 932, 935
Sau3AI	GATC	2 cut(s)	177, 829
Sau96I	GGNCC	3 cut(s)	387, 715, 953
SchI	GAGTC	4 cut(s)	75, 118, 171, 586
ScrFI	CCNGG	3 cut(s)	185, 587, 747
SduI	GDGCHC	1 cut(s)	102
SfuI	TTCGAA	1 cut(s)	734
SinI	GGWCC	1 cut(s)	387
SmiMI	CAYNNNNRTG	3 cut(s)	206, 707, 825
Sse9I	AATT	5 cut(s)	33, 47, 371, 787, 1031
SseBI	AGGCCT	2 cut(s)	152, 585
SsiI	CCGC	8 cut(s)	118, 659, 668, 674, 932, 935, 944, 1027
SspMI	CTAG	1 cut(s)	581
SstI	GAGCTC	1 cut(s)	102
StuI	AGGCCT	2 cut(s)	152, 585
StyD4I	CCNGG	3 cut(s)	183, 585, 745
StyI	CCWWGG	4 cut(s)	75, 153, 262, 798
TaaI	ACNGT	4 cut(s)	169, 527, 900, 1050
TaiI	ACGT	2 cut(s)	15, 447
TaqI	TCGA	1 cut(s)	734
TasI	AATT	5 cut(s)	33, 47, 371, 787, 1031
TatI	WGTACW	2 cut(s)	3, 858
TauI	GCSGC	3 cut(s)	676, 934, 937
TfiI	GAWTC	1 cut(s)	490
Tru1I	TTAA	2 cut(s)	50, 468
Tru9I	TTAA	2 cut(s)	50, 468
TscAI	CASTG	1 cut(s)	262
TseFI	GTSAC	2 cut(s)	163, 620
TseI	GCWGC	3 cut(s)	227, 322, 670
Tsp45I	GTSAC	2 cut(s)	163, 620
TspDTI	ATGAA	7 cut(s)	103, 369, 426, 489, 531, 656, 990
TspRI	CASTG	1 cut(s)	262
Tth111I	GACNNNGTC	1 cut(s)	203
Van91I	CCANNNNNTGG	1 cut(s)	76
VpaK11BI	GGWCC	1 cut(s)	387
VspI	ATTAAT	1 cut(s)	50
XagI	CCTNNNNNAGG	2 cut(s)	85, 797
XapI	RAATTY	2 cut(s)	371, 1031
XceI	RCATGY	4 cut(s)	10, 655, 712, 910
XspI	CTAG	1 cut(s)	581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.