Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0008121

Physical Location & Seq

Genomic Coordinates Reverse (-)

12830874 .. 12834162

Gene Structure 3289 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00172650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGGACGTAGAGAGAGTTCAAACCTTGGCCTTGCGTGGGCTCAACGAGCTCCCAGCGAAGTTCATCCGCCCGACTCATGAGCAACCCGAGAACAGCAAGGCCTTGGAGGGAGTCATCGTGCCGGTGATCTCCCTAGCTAAACCACACGACATTGTCGTGAAGGAAGTGGCTGAGGCAGCCTTTGAGTGGGGCTTCTTTCTCATCACTGACCATGGCATACCGGCTTCTTTGATAGAGCAGTTACAGAAGGTGGGCAAAGAGTTCTCTACGCTGCCACAGGAGGAAAAAAAGGCTTATAAAAATGACCCTGCTAATGGCAAATTTGATGGGGAAGTAAATGAAGAATATAGCAGGGAAATGCTGAGAGTAACAGACAAGCTACTGGAGTTGCTTTCCGAGAGTCTAGGCCTGGACAAGAAGGAACTGAAATCCCATGTCGGAGGAGACAAAATAGAGCTGGAAATGAAGATAAACATGTACCCGCCATGCCCGCAGCCGCAACTGGCTCTCGGAGTTGAGCCTCACACAGACATGTCGGCCCTCACCTTGCTGGTTTCGAACGATGTTCCTGGTCTTCAGCTGTGGAAAGATGGCAACTGGGTTTCAGTAAATTACCTAACCAAGGCAGGCGCAATCTTCATTCACATTGGTGATCAGATGGAGGTGTTGAGCAATGGCAAGTACAAGAGTGTTCTTCACCGGAGCTTGGTGAACAAGGAACGGTTGCGCATGTCGTGGGCTGTGTTCGTTGCGCCGCCTCATGAGGCGGTCATTGGGCCTCTGCCGGAGCTTTTGGATGAACAAAACCCTGCCAAATACTCTACCAAAACATATGCTGAATACCGGCACCGCAAATTCAACAAGATCCCACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00941 ko01100 ko01110 map00941 map01100 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

291

Amino Acids

32.8

Weight (kDa)

5.9

Isoelectric Point (pI)

40.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	40 - 112	1.1e-16	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	155 - 252	7.9e-29	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008121)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g26480
malus_domestica	MD15G1353800.v1.1
prunus_persica	Prupe.1G502300_v2.0.a1 Prupe.1G502500_v2.0.a1 Prupe.I003900_v2.0.a1 Prupe.I003900_v2.0.a1
pyrus_communis	pycom15g31720
rosa_chinensis	RchiOBHm_Chr6g0295241
rosa_laevigata	RLG00000011816
rosa_multiflora	Rmu_sc0007232.1_g000003 Rmu_sc0007232.1_g000004 Rmu_sc0010768.1_g000002
rosa_roxburghii	Rroxscaffold_171G00441440 Rroxscaffold_7G00172630 Rroxscaffold_7G00172650
rosa_rugosa	Rorug06G0249700 Rorug06G0249800.1 Rorug06G0249900
rosa_samantha	Rh6AG362800 Rh6BG370800 Rh6CG377100 Rh6DG363600
rosa_wichuraiana	Rw6G031660 Rw7G022060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	297
Acc16I	TGCGCA	1 cut(s)	728
AccB1I	GGYRCC	1 cut(s)	846
AciI	CCGC	7 cut(s)	67, 482, 491, 497, 755, 767, 850
AclWI	GGATC	1 cut(s)	859
AcsI	RAATTY	2 cut(s)	320, 854
AcuI	CTGAAG	1 cut(s)	560
AfaI	GTAC	2 cut(s)	479, 683
AfiI	CCNNNNNNNGG	5 cut(s)	36, 186, 314, 622, 706
AflIII	ACRYGT	2 cut(s)	474, 531
AgsI	TTSAA	2 cut(s)	20, 859
AjnI	CCWGG	2 cut(s)	408, 568
AleI	CACNNNNGTG	1 cut(s)	648
AluBI	AGCT	7 cut(s)	49, 137, 379, 457, 580, 705, 790
AluI	AGCT	7 cut(s)	49, 137, 379, 457, 580, 705, 790
Alw21I	GWGCWC	1 cut(s)	51
Alw26I	GTCTC	1 cut(s)	438
AlwI	GGATC	1 cut(s)	859
Ama87I	CYCGRG	1 cut(s)	86
AoxI	GGCC	5 cut(s)	27, 99, 406, 537, 776
ApeKI	GCWGC	3 cut(s)	176, 271, 493
ApoI	RAATTY	2 cut(s)	320, 854
AspLEI	GCGC	3 cut(s)	632, 729, 754
AspS9I	GGNCC	2 cut(s)	538, 776
AsuHPI	GGTGA	5 cut(s)	136, 535, 662, 689, 721
AsuII	TTCGAA	1 cut(s)	557
AvaI	CYCGRG	1 cut(s)	86
BanI	GGYRCC	1 cut(s)	846
BanII	GRGCYC	2 cut(s)	42, 51
BbsI	GAAGAC	1 cut(s)	566
Bbv12I	GWGCWC	1 cut(s)	51
BbvCI	CCTCAGC	1 cut(s)	171
BbvI	GCAGC	3 cut(s)	188, 258, 505
BccI	CCATC	3 cut(s)	320, 584, 652
BciT130I	CCWGG	2 cut(s)	410, 570
BclI	TGATCA	1 cut(s)	652
BcoDI	GTCTC	1 cut(s)	438
BfaI	CTAG	2 cut(s)	134, 404
BisI	GCNGC	5 cut(s)	177, 272, 494, 497, 755
BlsI	GCNGC	5 cut(s)	178, 273, 495, 498, 756
Bme1390I	CCNGG	2 cut(s)	410, 570
BmeT110I	CYCGRG	1 cut(s)	86
BmgT120I	GGNCC	2 cut(s)	538, 776
BmiI	GGNNCC	1 cut(s)	848
BmrFI	CCNGG	2 cut(s)	410, 570
BmrI	ACTGGG	1 cut(s)	607
BmuI	ACTGGG	1 cut(s)	607
BpiI	GAAGAC	1 cut(s)	566
BpmI	CTGGAG	1 cut(s)	404
Bpu10I	CCTNAGC	1 cut(s)	171
Bpu14I	TTCGAA	1 cut(s)	557
BsaJI	CCNNGG	4 cut(s)	24, 102, 211, 621
BsaWI	WCCGGW	1 cut(s)	699
BsaXI	ACNNNNNCTCC	2 cut(s)	102, 132
Bsc4I	CCNNNNNNNGG	5 cut(s)	36, 186, 314, 622, 706
Bse118I	RCCGGY	3 cut(s)	121, 220, 843
Bse1I	ACTGG	3 cut(s)	387, 507, 602
Bse3DI	GCAATG	1 cut(s)	679
BseBI	CCWGG	2 cut(s)	410, 570
BseDI	CCNNGG	4 cut(s)	24, 102, 211, 621
BseGI	GGATG	2 cut(s)	63, 802
BseLI	CCNNNNNNNGG	5 cut(s)	36, 186, 314, 622, 706
BseMI	GCAATG	1 cut(s)	679
BseMII	CTCAG	2 cut(s)	162, 353
BseNI	ACTGG	3 cut(s)	387, 507, 602
BseRI	GAGGAG	1 cut(s)	456
BseXI	GCAGC	3 cut(s)	188, 258, 505
BseYI	CCCAGC	1 cut(s)	52
BshFI	GGCC	5 cut(s)	29, 101, 408, 539, 778
BshNI	GGYRCC	1 cut(s)	846
BsiHKAI	GWGCWC	1 cut(s)	51
BsiHKCI	CYCGRG	1 cut(s)	86
BsiSI	CCGG	5 cut(s)	122, 221, 700, 785, 844
BslI	CCNNNNNNNGG	5 cut(s)	36, 186, 314, 622, 706
BsmAI	GTCTC	1 cut(s)	438
BsnI	GGCC	5 cut(s)	29, 101, 408, 539, 778
BsoBI	CYCGRG	1 cut(s)	86
Bsp119I	TTCGAA	1 cut(s)	557
Bsp1286I	GDGCHC	2 cut(s)	42, 51
Bsp143I	GATC	3 cut(s)	126, 652, 864
Bsp19I	CCATGG	1 cut(s)	211
BspACI	CCGC	7 cut(s)	67, 482, 491, 497, 755, 767, 850
BspANI	GGCC	5 cut(s)	29, 101, 408, 539, 778
BspCNI	CTCAG	2 cut(s)	163, 354
BspHI	TCATGA	2 cut(s)	76, 760
BspLI	GGNNCC	1 cut(s)	848
BspPI	GGATC	1 cut(s)	859
BspT104I	TTCGAA	1 cut(s)	557
BspT107I	GGYRCC	1 cut(s)	846
BsrDI	GCAATG	1 cut(s)	679
BsrFI	RCCGGY	3 cut(s)	121, 220, 843
BsrI	ACTGG	3 cut(s)	387, 507, 602
BssAI	RCCGGY	3 cut(s)	121, 220, 843
BssECI	CCNNGG	4 cut(s)	24, 102, 211, 621
BssMI	GATC	3 cut(s)	126, 652, 864
BssT1I	CCWWGG	4 cut(s)	24, 102, 211, 621
Bst2UI	CCWGG	2 cut(s)	410, 570
Bst4CI	ACNGT	2 cut(s)	723, 873
BstBI	TTCGAA	1 cut(s)	557
BstC8I	GCNNGC	2 cut(s)	491, 628
BstDEI	CTNAG	2 cut(s)	171, 362
BstDSI	CCRYGG	1 cut(s)	211
BstENI	CCTNNNNNAGG	1 cut(s)	620
BstF5I	GGATG	2 cut(s)	63, 802
BstHHI	GCGC	3 cut(s)	632, 729, 754
BstKTI	GATC	3 cut(s)	129, 655, 867
BstMAI	GTCTC	1 cut(s)	438
BstMBI	GATC	3 cut(s)	126, 652, 864
BstMWI	GCNNNNNNNGC	3 cut(s)	46, 176, 490
BstNI	CCWGG	2 cut(s)	410, 570
BstNSI	RCATGY	3 cut(s)	478, 535, 733
BstSCI	CCNGG	2 cut(s)	408, 568
BstV1I	GCAGC	3 cut(s)	188, 258, 505
BstV2I	GAAGAC	1 cut(s)	566
BstX2I	RGATCY	1 cut(s)	864
BstYI	RGATCY	1 cut(s)	864
BsuRI	GGCC	5 cut(s)	29, 101, 408, 539, 778
BtgI	CCRYGG	1 cut(s)	211
BtsCI	GGATG	2 cut(s)	63, 802
BtsIMutI	CAGTG	1 cut(s)	204
Cac8I	GCNNGC	2 cut(s)	491, 628
CciI	TCATGA	2 cut(s)	76, 760
CfoI	GCGC	3 cut(s)	632, 729, 754
Cfr10I	RCCGGY	3 cut(s)	121, 220, 843
Cfr13I	GGNCC	2 cut(s)	538, 776
Csp6I	GTAC	2 cut(s)	478, 682
CviAII	CATG	8 cut(s)	77, 212, 434, 475, 486, 532, 730, 761
CviQI	GTAC	2 cut(s)	478, 682
DdeI	CTNAG	2 cut(s)	171, 362
DpnI	GATC	3 cut(s)	128, 654, 866
DpnII	GATC	3 cut(s)	126, 652, 864
EciI	GGCGGA	1 cut(s)	56
Ecl136II	GAGCTC	1 cut(s)	49
Eco130I	CCWWGG	4 cut(s)	24, 102, 211, 621
Eco147I	AGGCCT	2 cut(s)	101, 408
Eco24I	GRGCYC	2 cut(s)	42, 51
Eco53kI	GAGCTC	1 cut(s)	49
Eco57I	CTGAAG	1 cut(s)	560
Eco88I	CYCGRG	1 cut(s)	86
EcoICRI	GAGCTC	1 cut(s)	49
EcoNI	CCTNNNNNAGG	1 cut(s)	620
EcoRII	CCWGG	2 cut(s)	408, 568
EcoT14I	CCWWGG	4 cut(s)	24, 102, 211, 621
EcoT38I	GRGCYC	2 cut(s)	42, 51
ErhI	CCWWGG	4 cut(s)	24, 102, 211, 621
FaeI	CATG	8 cut(s)	80, 215, 437, 478, 489, 535, 733, 764
FatI	CATG	8 cut(s)	76, 211, 433, 474, 485, 531, 729, 760
FauI	CCCGC	2 cut(s)	489, 498
FauNDI	CATATG	1 cut(s)	832
FbaI	TGATCA	1 cut(s)	652
Fnu4HI	GCNGC	5 cut(s)	177, 272, 494, 497, 755
FokI	GGATG	2 cut(s)	50, 809
FriOI	GRGCYC	2 cut(s)	42, 51
Fsp4HI	GCNGC	5 cut(s)	177, 272, 494, 497, 755
FspBI	CTAG	2 cut(s)	134, 404
FspI	TGCGCA	1 cut(s)	728
GlaI	GCGC	3 cut(s)	631, 728, 753
GluI	GCNGC	5 cut(s)	177, 272, 494, 497, 755
GsaI	CCCAGC	1 cut(s)	56
GsuI	CTGGAG	1 cut(s)	404
HaeIII	GGCC	5 cut(s)	29, 101, 408, 539, 778
HapII	CCGG	5 cut(s)	122, 221, 700, 785, 844
HhaI	GCGC	3 cut(s)	632, 729, 754
Hin1II	CATG	8 cut(s)	80, 215, 437, 478, 489, 535, 733, 764
Hin6I	GCGC	3 cut(s)	630, 727, 752
HinP1I	GCGC	3 cut(s)	630, 727, 752
HinfI	GANTC	3 cut(s)	73, 111, 400
HpaII	CCGG	5 cut(s)	122, 221, 700, 785, 844
HphI	GGTGA	5 cut(s)	136, 535, 662, 689, 721
Hpy166II	GTNNAC	1 cut(s)	712
Hpy188I	TCNGA	4 cut(s)	397, 440, 512, 657
Hpy188III	TCNNGA	3 cut(s)	77, 157, 761
Hpy8I	GTNNAC	1 cut(s)	712
HpyAV	CCTTC	3 cut(s)	154, 241, 412
HpyCH4III	ACNGT	2 cut(s)	723, 873
HpyCH4IV	ACGT	1 cut(s)	6
HpyF10VI	GCNNNNNNNGC	3 cut(s)	46, 176, 490
HpyF3I	CTNAG	2 cut(s)	171, 362
HpySE526I	ACGT	1 cut(s)	6
Hsp92II	CATG	8 cut(s)	80, 215, 437, 478, 489, 535, 733, 764
HspAI	GCGC	3 cut(s)	630, 727, 752
Ksp22I	TGATCA	1 cut(s)	652
Kzo9I	GATC	3 cut(s)	126, 652, 864
LmnI	GCTCC	3 cut(s)	54, 702, 787
Lsp1109I	GCAGC	3 cut(s)	188, 258, 505
MaeI	CTAG	2 cut(s)	134, 404
MaeII	ACGT	1 cut(s)	6
MaeIII	GTNAC	2 cut(s)	240, 367
MalI	GATC	3 cut(s)	128, 654, 866
MboI	GATC	3 cut(s)	126, 652, 864
MboII	GAAGA	5 cut(s)	353, 478, 566, 628, 686
MflI	RGATCY	1 cut(s)	864
MhlI	GDGCHC	2 cut(s)	42, 51
MluCI	AATT	3 cut(s)	320, 610, 854
MlyI	GAGTC	3 cut(s)	67, 120, 409
MmeI	TCCRAC	1 cut(s)	418
MslI	CAYNNNNRTG	3 cut(s)	155, 530, 648
MspA1I	CMGCKG	1 cut(s)	580
MspI	CCGG	5 cut(s)	122, 221, 700, 785, 844
MspR9I	CCNGG	2 cut(s)	410, 570
MvaI	CCWGG	2 cut(s)	410, 570
MwoI	GCNNNNNNNGC	3 cut(s)	46, 176, 490
NcoI	CCATGG	1 cut(s)	211
NdeI	CATATG	1 cut(s)	832
NdeII	GATC	3 cut(s)	126, 652, 864
NlaIII	CATG	8 cut(s)	80, 215, 437, 478, 489, 535, 733, 764
NlaIV	GGNNCC	1 cut(s)	848
NsbI	TGCGCA	1 cut(s)	728
NspI	RCATGY	3 cut(s)	478, 535, 733
NspV	TTCGAA	1 cut(s)	557
OliI	CACNNNNGTG	1 cut(s)	648
PagI	TCATGA	2 cut(s)	76, 760
PceI	AGGCCT	2 cut(s)	101, 408
PciI	ACATGT	2 cut(s)	474, 531
PcsI	WCGNNNNNNNCGW	1 cut(s)	153
PflFI	GACNNNGTC	1 cut(s)	152
PkrI	GCNGC	5 cut(s)	178, 273, 495, 498, 756
PleI	GAGTC	3 cut(s)	67, 119, 408
PpsI	GAGTC	3 cut(s)	67, 119, 408
PscI	ACATGT	2 cut(s)	474, 531
PsiI	TTATAA	1 cut(s)	297
Psp124BI	GAGCTC	1 cut(s)	51
Psp6I	CCWGG	2 cut(s)	408, 568
PspFI	CCCAGC	1 cut(s)	52
PspGI	CCWGG	2 cut(s)	408, 568
PspN4I	GGNNCC	1 cut(s)	848
PspPI	GGNCC	2 cut(s)	538, 776
PsrI	GAACNNNNNNTAC	1 cut(s)	32
PsuI	RGATCY	1 cut(s)	864
PsyI	GACNNNGTC	1 cut(s)	152
PvuII	CAGCTG	1 cut(s)	580
RsaI	GTAC	2 cut(s)	479, 683
RsaNI	GTAC	2 cut(s)	478, 682
RseI	CAYNNNNRTG	3 cut(s)	155, 530, 648
SacI	GAGCTC	1 cut(s)	51
SatI	GCNGC	5 cut(s)	177, 272, 494, 497, 755
Sau3AI	GATC	3 cut(s)	126, 652, 864
Sau96I	GGNCC	2 cut(s)	538, 776
SchI	GAGTC	3 cut(s)	67, 120, 409
ScrFI	CCNGG	2 cut(s)	410, 570
SduI	GDGCHC	2 cut(s)	42, 51
SfuI	TTCGAA	1 cut(s)	557
SmiMI	CAYNNNNRTG	3 cut(s)	155, 530, 648
Sse9I	AATT	3 cut(s)	320, 610, 854
SseBI	AGGCCT	2 cut(s)	101, 408
SsiI	CCGC	7 cut(s)	67, 482, 491, 497, 755, 767, 850
SspMI	CTAG	2 cut(s)	134, 404
SstI	GAGCTC	1 cut(s)	51
StuI	AGGCCT	2 cut(s)	101, 408
StyD4I	CCNGG	2 cut(s)	408, 568
StyI	CCWWGG	4 cut(s)	24, 102, 211, 621
TaaI	ACNGT	2 cut(s)	723, 873
TaiI	ACGT	1 cut(s)	9
TaqI	TCGA	1 cut(s)	557
TasI	AATT	3 cut(s)	320, 610, 854
TatI	WGTACW	1 cut(s)	681
TauI	GCSGC	2 cut(s)	499, 757
TscAI	CASTG	1 cut(s)	211
TseI	GCWGC	3 cut(s)	176, 271, 493
TspDTI	ATGAA	5 cut(s)	52, 354, 479, 628, 813
TspRI	CASTG	1 cut(s)	211
Tth111I	GACNNNGTC	1 cut(s)	152
XagI	CCTNNNNNAGG	1 cut(s)	620
XapI	RAATTY	2 cut(s)	320, 854
XceI	RCATGY	3 cut(s)	478, 535, 733
XspI	CTAG	2 cut(s)	134, 404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.