Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0007578

Physical Location & Seq

Genomic Coordinates Forward (+)

22544818 .. 22545854

Gene Structure 1037 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g28920.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGCCTCTTCCAACAAGCTCTCTGCTGCCCTTCTCATCATCTCAGTCCTTCTCTACTCTTCCACATTCTCCATTGCCTGCGGTACATGCAAGCCTCACCCCAAGCCTACACCACCAACACCAGCAGCAACACCACCAGCTGCAGAAAAGTGCCCGAAAGACACGTTGAAGCTAGGAGTCTGTGCAGATCTTCTAGGGCTTGTGAACCTCCAAATCGGAAGTCCTCCAACGACTCCTTGCTGTTCATTGCTTAAAGGCCTCACTGATTTGGAGGCTGCGCTTTGTCTTTGCACTGCTCTCAAGGCCAATGTGCTCGGTATTAACTTAAATGTGCCAATCTCTTTGAGCGTGCTTGTTAGCGCCTGCCAGAAATCTGTGCCTTCTGGTTTTCAATGTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hydrophob_seed

Protein Analysis

134

Amino Acids

13.56

Weight (kDa)

8.35

Isoelectric Point (pI)

35.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	44 - 132	1.9e-07	Probable lipid transfer
Hydrophob_seed	PF14547	51 - 132	1.4e-26	Hydrophobic seed protein
Tryp_alpha_amyl	PF00234	51 - 132	3.6e-15	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007578)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g28920
malus_domestica	MD15G1126700.v1.1
prunus_persica	Prupe.1G482500_v2.0.a1
pyrus_communis	pycom15g11430
rosa_chinensis	RchiOBHm_Chr6g0297661 RchiOBHm_Chr6g0297721 RchiOBHm_Chr6g0297741
rosa_laevigata	RLG00000011567 RLG00000011572
rosa_multiflora	Rmu_co8194776.1_g000001 Rmu_sc0007683.1_g000005 Rmu_sc0007847.1_g000004
rosa_roxburghii	Rroxscaffold_7G00170240 Rroxscaffold_7G00170260 Rroxscaffold_7G00179090
rosa_rugosa	Rorug06G0274800 Rorug06G0275100
rosa_samantha	Rh6AG385400 Rh6AG385600 Rh6BG394100 Rh6CG399900 Rh6DG386300
rosa_wichuraiana	Rw6G033580 Rw6G033610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	81
AfaI	GTAC	1 cut(s)	85
AflIII	ACRYGT	1 cut(s)	162
AgsI	TTSAA	2 cut(s)	169, 392
AluBI	AGCT	3 cut(s)	19, 140, 172
AluI	AGCT	3 cut(s)	19, 140, 172
Alw21I	GWGCWC	1 cut(s)	315
AoxI	GGCC	3 cut(s)	3, 256, 303
ApeKI	GCWGC	4 cut(s)	26, 125, 140, 275
ArsI	GACNNNNNNTTYG	2 cut(s)	205, 237
AspLEI	GCGC	2 cut(s)	280, 362
AsuHPI	GGTGA	1 cut(s)	89
BaeGI	GKGCMC	1 cut(s)	155
Bbv12I	GWGCWC	1 cut(s)	315
BbvI	GCAGC	4 cut(s)	13, 127, 137, 262
BfaI	CTAG	2 cut(s)	173, 194
BfmI	CTRYAG	1 cut(s)	141
BfoI	RGCGCY	1 cut(s)	363
BglII	AGATCT	1 cut(s)	187
BisI	GCNGC	4 cut(s)	27, 126, 141, 276
BlsI	GCNGC	4 cut(s)	28, 127, 142, 277
BpuEI	CTTGAG	1 cut(s)	284
Bse3DI	GCAATG	2 cut(s)	72, 245
BseMI	GCAATG	2 cut(s)	72, 245
BseMII	CTCAG	1 cut(s)	57
BseSI	GKGCMC	1 cut(s)	155
BseXI	GCAGC	4 cut(s)	13, 127, 137, 262
BsgI	GTGCAG	1 cut(s)	204
BshFI	GGCC	3 cut(s)	5, 258, 305
BsiHKAI	GWGCWC	1 cut(s)	315
BsnI	GGCC	3 cut(s)	5, 258, 305
Bsp1286I	GDGCHC	2 cut(s)	155, 315
Bsp143I	GATC	1 cut(s)	187
BspACI	CCGC	1 cut(s)	81
BspANI	GGCC	3 cut(s)	5, 258, 305
BspCNI	CTCAG	1 cut(s)	56
BspMAI	CTGCAG	1 cut(s)	145
BsrDI	GCAATG	2 cut(s)	72, 245
BssMI	GATC	1 cut(s)	187
Bst6I	CTCTTC	2 cut(s)	13, 64
BstC8I	GCNNGC	4 cut(s)	79, 92, 350, 364
BstDEI	CTNAG	1 cut(s)	43
BstH2I	RGCGCY	1 cut(s)	363
BstHHI	GCGC	2 cut(s)	280, 362
BstKTI	GATC	1 cut(s)	190
BstMBI	GATC	1 cut(s)	187
BstMWI	GCNNNNNNNGC	2 cut(s)	87, 302
BstNSI	RCATGY	1 cut(s)	90
BstSFI	CTRYAG	1 cut(s)	141
BstSLI	GKGCMC	1 cut(s)	155
BstV1I	GCAGC	4 cut(s)	13, 127, 137, 262
BstX2I	RGATCY	1 cut(s)	187
BstYI	RGATCY	1 cut(s)	187
BsuRI	GGCC	3 cut(s)	5, 258, 305
BtsI	GCAGTG	1 cut(s)	291
BtsIMutI	CAGTG	2 cut(s)	261, 291
Cac8I	GCNNGC	4 cut(s)	79, 92, 350, 364
CfoI	GCGC	2 cut(s)	280, 362
Csp6I	GTAC	1 cut(s)	84
CviAII	CATG	1 cut(s)	87
CviQI	GTAC	1 cut(s)	84
DdeI	CTNAG	1 cut(s)	43
DpnI	GATC	1 cut(s)	189
DpnII	GATC	1 cut(s)	187
Eam1104I	CTCTTC	2 cut(s)	13, 64
EarI	CTCTTC	2 cut(s)	13, 64
Eco147I	AGGCCT	1 cut(s)	258
FaeI	CATG	1 cut(s)	90
FaiI	YATR	1 cut(s)	88
FatI	CATG	1 cut(s)	86
Fnu4HI	GCNGC	4 cut(s)	27, 126, 141, 276
Fsp4HI	GCNGC	4 cut(s)	27, 126, 141, 276
FspBI	CTAG	2 cut(s)	173, 194
GlaI	GCGC	2 cut(s)	279, 361
GluI	GCNGC	4 cut(s)	27, 126, 141, 276
HaeII	RGCGCY	1 cut(s)	363
HaeIII	GGCC	3 cut(s)	5, 258, 305
HhaI	GCGC	2 cut(s)	280, 362
Hin1II	CATG	1 cut(s)	90
Hin6I	GCGC	2 cut(s)	278, 360
HinP1I	GCGC	2 cut(s)	278, 360
HinfI	GANTC	2 cut(s)	177, 232
HphI	GGTGA	1 cut(s)	89
Hpy166II	GTNNAC	1 cut(s)	205
Hpy188I	TCNGA	1 cut(s)	218
Hpy8I	GTNNAC	1 cut(s)	205
HpyAV	CCTTC	3 cut(s)	41, 59, 390
HpyCH4IV	ACGT	1 cut(s)	164
HpyCH4V	TGCA	4 cut(s)	90, 143, 185, 291
HpyF10VI	GCNNNNNNNGC	2 cut(s)	87, 302
HpyF3I	CTNAG	1 cut(s)	43
HpySE526I	ACGT	1 cut(s)	164
Hsp92II	CATG	1 cut(s)	90
HspAI	GCGC	2 cut(s)	278, 360
Kzo9I	GATC	1 cut(s)	187
LpnPI	CCDG	6 cut(s)	91, 135, 150, 369, 376, 380
Lsp1109I	GCAGC	4 cut(s)	13, 127, 137, 262
MaeI	CTAG	2 cut(s)	173, 194
MaeII	ACGT	1 cut(s)	164
MalI	GATC	1 cut(s)	189
MboI	GATC	1 cut(s)	187
MboII	GAAGA	2 cut(s)	51, 182
MflI	RGATCY	1 cut(s)	187
MhlI	GDGCHC	2 cut(s)	155, 315
MlyI	GAGTC	2 cut(s)	186, 226
MmeI	TCCRAC	2 cut(s)	36, 251
MnlI	CCTC	6 cut(s)	16, 105, 218, 234, 265, 269
MseI	TTAA	3 cut(s)	252, 321, 326
MspA1I	CMGCKG	1 cut(s)	140
MwoI	GCNNNNNNNGC	2 cut(s)	87, 302
NdeII	GATC	1 cut(s)	187
NlaIII	CATG	1 cut(s)	90
NspI	RCATGY	1 cut(s)	90
PceI	AGGCCT	1 cut(s)	258
PkrI	GCNGC	4 cut(s)	28, 127, 142, 277
PleI	GAGTC	2 cut(s)	185, 226
PpsI	GAGTC	2 cut(s)	185, 226
PstI	CTGCAG	1 cut(s)	145
PsuI	RGATCY	1 cut(s)	187
PvuII	CAGCTG	1 cut(s)	140
RsaI	GTAC	1 cut(s)	85
RsaNI	GTAC	1 cut(s)	84
SaqAI	TTAA	3 cut(s)	252, 321, 326
SatI	GCNGC	4 cut(s)	27, 126, 141, 276
Sau3AI	GATC	1 cut(s)	187
SchI	GAGTC	2 cut(s)	186, 226
SduI	GDGCHC	2 cut(s)	155, 315
SetI	ASST	5 cut(s)	21, 142, 167, 174, 210
SfcI	CTRYAG	1 cut(s)	141
SmlI	CTYRAG	1 cut(s)	299
SmoI	CTYRAG	1 cut(s)	299
SseBI	AGGCCT	1 cut(s)	258
SsiI	CCGC	1 cut(s)	81
SspMI	CTAG	2 cut(s)	173, 194
StuI	AGGCCT	1 cut(s)	258
TaiI	ACGT	1 cut(s)	167
Tru1I	TTAA	3 cut(s)	252, 321, 326
Tru9I	TTAA	3 cut(s)	252, 321, 326
TscAI	CASTG	2 cut(s)	268, 298
TseI	GCWGC	4 cut(s)	26, 125, 140, 275
TspDTI	ATGAA	1 cut(s)	234
TspRI	CASTG	2 cut(s)	268, 298
XceI	RCATGY	1 cut(s)	90
XspI	CTAG	2 cut(s)	173, 194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.