Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0007578

Physical Location & Seq

Genomic Coordinates Forward (+)

58139338 .. 58140542

Gene Structure 1205 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G033580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGCTTCTTCTACCAATCTCTCTGCAACCCTTCTCGTCTTCTCAGTCCTTCTCTACTCTTCAACATTCTCCAGTGCTTGCGGCACATGCAACCCTGCACCAAAAACCCCAAAACCGGCTCCAACACCAATAACACCGGTACCAACAACACCAGCACCAGCACCAGCTATGGAAACTTGCCCGAGAGACACGTTGAAGTTAGGGGTTTGTGCAGACCTTCTGGGACTCGTGAACGCTCAAATTGGATCGCCAGTAACCAGTCCCTGCTGTGCACTGCTTGAAGGCTTGGCTGATTTGGAGGCTGCTCTTTGTCTTTGTACCGCGCTTAAGGCCAATGTGCTTGGTATTAACTTGGACGTGCCAATTGCTTTGAATTTGCTTGTTAGTGCTTGCCAGAAAACTGTCCCTCCTGGTTTTAAATGCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hydrophob_seed

Protein Analysis

142

Amino Acids

14.39

Weight (kDa)

7.42

Isoelectric Point (pI)

43.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	50 - 141	2.9e-08	Probable lipid transfer
Hydrophob_seed	PF14547	59 - 141	2.4e-27	Hydrophobic seed protein
Tryp_alpha_amyl	PF00234	60 - 141	1.9e-14	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007578)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g28920
malus_domestica	MD15G1126700.v1.1
prunus_persica	Prupe.1G482500_v2.0.a1
pyrus_communis	pycom15g11430
rosa_chinensis	RchiOBHm_Chr6g0297661 RchiOBHm_Chr6g0297721 RchiOBHm_Chr6g0297741
rosa_laevigata	RLG00000011567 RLG00000011572
rosa_multiflora	Rmu_co8194776.1_g000001 Rmu_sc0007683.1_g000005 Rmu_sc0007847.1_g000004
rosa_roxburghii	Rroxscaffold_7G00170240 Rroxscaffold_7G00170260 Rroxscaffold_7G00179090
rosa_rugosa	Rorug06G0274800 Rorug06G0275100
rosa_samantha	Rh6AG385400 Rh6AG385600 Rh6BG394100 Rh6CG399900 Rh6DG386300
rosa_wichuraiana	Rw6G033580 Rw6G033610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	139
AccB1I	GGYRCC	1 cut(s)	139
AccII	CGCG	1 cut(s)	323
AciI	CCGC	2 cut(s)	81, 321
AclWI	GGATC	1 cut(s)	253
AcsI	RAATTY	1 cut(s)	373
AfaI	GTAC	2 cut(s)	141, 319
AfiI	CCNNNNNNNGG	1 cut(s)	115
AflII	CTTAAG	1 cut(s)	326
AflIII	ACRYGT	1 cut(s)	189
AgeI	ACCGGT	1 cut(s)	136
AgsI	TTSAA	4 cut(s)	63, 196, 281, 373
AjiI	CACGTC	1 cut(s)	358
AjnI	CCWGG	1 cut(s)	409
AluBI	AGCT	1 cut(s)	167
AluI	AGCT	1 cut(s)	167
Alw21I	GWGCWC	1 cut(s)	274
Alw26I	GTCTC	1 cut(s)	180
Alw44I	GTGCAC	1 cut(s)	270
AlwI	GGATC	1 cut(s)	253
AlwNI	CAGNNNCTG	1 cut(s)	264
Ama87I	CYCGRG	1 cut(s)	181
AoxI	GGCC	1 cut(s)	330
ApaLI	GTGCAC	1 cut(s)	270
ApeKI	GCWGC	1 cut(s)	302
ApoI	RAATTY	1 cut(s)	373
AsiGI	ACCGGT	1 cut(s)	136
Asp718I	GGTACC	1 cut(s)	139
AspLEI	GCGC	1 cut(s)	325
AvaI	CYCGRG	1 cut(s)	181
BaeGI	GKGCMC	1 cut(s)	274
BaeI	ACNNNNGTAYC	2 cut(s)	123, 156
BanI	GGYRCC	1 cut(s)	139
BauI	CACGAG	1 cut(s)	227
BbsI	GAAGAC	1 cut(s)	31
Bbv12I	GWGCWC	1 cut(s)	274
BbvI	GCAGC	1 cut(s)	289
BciT130I	CCWGG	1 cut(s)	411
BcoDI	GTCTC	1 cut(s)	180
BfrI	CTTAAG	1 cut(s)	326
BisI	GCNGC	2 cut(s)	82, 303
BlsI	GCNGC	2 cut(s)	83, 304
Bme1390I	CCNGG	1 cut(s)	411
BmeT110I	CYCGRG	1 cut(s)	181
BmgBI	CACGTC	1 cut(s)	358
BmiI	GGNNCC	2 cut(s)	120, 141
BmrFI	CCNGG	1 cut(s)	411
BpiI	GAAGAC	1 cut(s)	31
BpmI	CTGGAG	1 cut(s)	55
BsaWI	WCCGGW	1 cut(s)	136
BsaXI	ACNNNNNCTCC	2 cut(s)	391, 421
Bsc4I	CCNNNNNNNGG	1 cut(s)	115
Bse118I	RCCGGY	2 cut(s)	115, 136
Bse1I	ACTGG	3 cut(s)	72, 251, 258
BseBI	CCWGG	1 cut(s)	411
BseLI	CCNNNNNNNGG	1 cut(s)	115
BseMII	CTCAG	1 cut(s)	57
BseNI	ACTGG	3 cut(s)	72, 251, 258
BseSI	GKGCMC	1 cut(s)	274
BseXI	GCAGC	1 cut(s)	289
BsgI	GTGCAG	2 cut(s)	81, 231
Bsh1236I	CGCG	1 cut(s)	323
BshFI	GGCC	1 cut(s)	332
BshNI	GGYRCC	1 cut(s)	139
BshTI	ACCGGT	1 cut(s)	136
BsiHKAI	GWGCWC	1 cut(s)	274
BsiHKCI	CYCGRG	1 cut(s)	181
BsiSI	CCGG	2 cut(s)	116, 137
BslFI	GGGAC	3 cut(s)	237, 246, 389
BslI	CCNNNNNNNGG	1 cut(s)	115
BsmAI	GTCTC	1 cut(s)	180
BsmFI	GGGAC	3 cut(s)	237, 246, 389
BsnI	GGCC	1 cut(s)	332
BsoBI	CYCGRG	1 cut(s)	181
Bsp1286I	GDGCHC	1 cut(s)	274
Bsp143I	GATC	1 cut(s)	245
BspACI	CCGC	2 cut(s)	81, 321
BspANI	GGCC	1 cut(s)	332
BspCNI	CTCAG	1 cut(s)	56
BspFNI	CGCG	1 cut(s)	323
BspLI	GGNNCC	2 cut(s)	120, 141
BspPI	GGATC	1 cut(s)	253
BspT107I	GGYRCC	1 cut(s)	139
BspTI	CTTAAG	1 cut(s)	326
BsrFI	RCCGGY	2 cut(s)	115, 136
BsrI	ACTGG	3 cut(s)	72, 251, 258
BssAI	RCCGGY	2 cut(s)	115, 136
BssMI	GATC	1 cut(s)	245
BssSI	CACGAG	1 cut(s)	227
Bst2BI	CACGAG	1 cut(s)	227
Bst2UI	CCWGG	1 cut(s)	411
Bst4CI	ACNGT	1 cut(s)	403
Bst6I	CTCTTC	1 cut(s)	64
BstAFI	CTTAAG	1 cut(s)	326
BstC8I	GCNNGC	2 cut(s)	79, 391
BstDEI	CTNAG	1 cut(s)	43
BstFNI	CGCG	1 cut(s)	323
BstHHI	GCGC	1 cut(s)	325
BstKTI	GATC	1 cut(s)	248
BstMAI	GTCTC	1 cut(s)	180
BstMBI	GATC	1 cut(s)	245
BstMWI	GCNNNNNNNGC	2 cut(s)	87, 329
BstNI	CCWGG	1 cut(s)	411
BstNSI	RCATGY	1 cut(s)	90
BstSCI	CCNGG	1 cut(s)	409
BstSLI	GKGCMC	1 cut(s)	274
BstUI	CGCG	1 cut(s)	323
BstV1I	GCAGC	1 cut(s)	289
BstV2I	GAAGAC	1 cut(s)	31
BsuRI	GGCC	1 cut(s)	332
BtrI	CACGTC	1 cut(s)	358
BtsI	GCAGTG	1 cut(s)	272
BtsIMutI	CAGTG	2 cut(s)	79, 272
Cac8I	GCNNGC	2 cut(s)	79, 391
CaiI	CAGNNNCTG	1 cut(s)	264
CfoI	GCGC	1 cut(s)	325
Cfr10I	RCCGGY	2 cut(s)	115, 136
Csp6I	GTAC	2 cut(s)	140, 318
CspAI	ACCGGT	1 cut(s)	136
CviAII	CATG	1 cut(s)	87
CviJI	RGCY	7 cut(s)	5, 119, 167, 285, 290, 302, 332
CviKI_1	RGCY	7 cut(s)	5, 119, 167, 285, 290, 302, 332
CviQI	GTAC	2 cut(s)	140, 318
DdeI	CTNAG	1 cut(s)	43
DpnI	GATC	1 cut(s)	247
DpnII	GATC	1 cut(s)	245
DraI	TTTAAA	1 cut(s)	418
Eam1104I	CTCTTC	1 cut(s)	64
EarI	CTCTTC	1 cut(s)	64
Eco88I	CYCGRG	1 cut(s)	181
EcoRII	CCWGG	1 cut(s)	409
FaeI	CATG	1 cut(s)	90
FaiI	YATR	2 cut(s)	88, 170
FaqI	GGGAC	3 cut(s)	237, 246, 389
FatI	CATG	1 cut(s)	86
Fnu4HI	GCNGC	2 cut(s)	82, 303
Fsp4HI	GCNGC	2 cut(s)	82, 303
GlaI	GCGC	1 cut(s)	324
GluI	GCNGC	2 cut(s)	82, 303
GsuI	CTGGAG	1 cut(s)	55
HaeIII	GGCC	1 cut(s)	332
HapII	CCGG	2 cut(s)	116, 137
HhaI	GCGC	1 cut(s)	325
Hin1II	CATG	1 cut(s)	90
Hin6I	GCGC	1 cut(s)	323
HinP1I	GCGC	1 cut(s)	323
HinfI	GANTC	1 cut(s)	225
HpaII	CCGG	2 cut(s)	116, 137
Hpy166II	GTNNAC	2 cut(s)	232, 272
Hpy188III	TCNNGA	1 cut(s)	229
Hpy8I	GTNNAC	2 cut(s)	232, 272
HpyAV	CCTTC	4 cut(s)	41, 59, 227, 275
HpyCH4III	ACNGT	1 cut(s)	403
HpyCH4IV	ACGT	2 cut(s)	191, 357
HpyCH4V	TGCA	6 cut(s)	26, 90, 98, 212, 272, 423
HpyF10VI	GCNNNNNNNGC	2 cut(s)	87, 329
HpyF3I	CTNAG	1 cut(s)	43
HpySE526I	ACGT	2 cut(s)	191, 357
Hsp92II	CATG	1 cut(s)	90
HspAI	GCGC	1 cut(s)	323
KpnI	GGTACC	1 cut(s)	143
Kzo9I	GATC	1 cut(s)	245
LmnI	GCTCC	1 cut(s)	124
Lsp1109I	GCAGC	1 cut(s)	289
MaeII	ACGT	2 cut(s)	191, 357
MaeIII	GTNAC	1 cut(s)	253
MalI	GATC	1 cut(s)	247
MboI	GATC	1 cut(s)	245
MboII	GAAGA	2 cut(s)	31, 51
MfeI	CAATTG	1 cut(s)	363
MhlI	GDGCHC	1 cut(s)	274
MluCI	AATT	3 cut(s)	240, 363, 373
MlyI	GAGTC	1 cut(s)	219
MmeI	TCCRAC	1 cut(s)	146
MnlI	CCTC	2 cut(s)	292, 417
MseI	TTAA	3 cut(s)	327, 348, 417
MspCI	CTTAAG	1 cut(s)	326
MspI	CCGG	2 cut(s)	116, 137
MspR9I	CCNGG	1 cut(s)	411
MunI	CAATTG	1 cut(s)	363
MvaI	CCWGG	1 cut(s)	411
MvnI	CGCG	1 cut(s)	323
MwoI	GCNNNNNNNGC	2 cut(s)	87, 329
NdeII	GATC	1 cut(s)	245
NlaIII	CATG	1 cut(s)	90
NlaIV	GGNNCC	2 cut(s)	120, 141
NspI	RCATGY	1 cut(s)	90
PinAI	ACCGGT	1 cut(s)	136
PkrI	GCNGC	2 cut(s)	83, 304
PleI	GAGTC	1 cut(s)	219
PpsI	GAGTC	1 cut(s)	219
Psp6I	CCWGG	1 cut(s)	409
PspGI	CCWGG	1 cut(s)	409
PspN4I	GGNNCC	2 cut(s)	120, 141
PstNI	CAGNNNCTG	1 cut(s)	264
RsaI	GTAC	2 cut(s)	141, 319
RsaNI	GTAC	2 cut(s)	140, 318
SaqAI	TTAA	3 cut(s)	327, 348, 417
SatI	GCNGC	2 cut(s)	82, 303
Sau3AI	GATC	1 cut(s)	245
SchI	GAGTC	1 cut(s)	219
ScrFI	CCNGG	1 cut(s)	411
SduI	GDGCHC	1 cut(s)	274
SetI	ASST	4 cut(s)	169, 194, 219, 360
SmlI	CTYRAG	1 cut(s)	326
SmoI	CTYRAG	1 cut(s)	326
Sse9I	AATT	3 cut(s)	240, 363, 373
SsiI	CCGC	2 cut(s)	81, 321
StyD4I	CCNGG	1 cut(s)	409
TaaI	ACNGT	1 cut(s)	403
TaiI	ACGT	2 cut(s)	194, 360
TasI	AATT	3 cut(s)	240, 363, 373
TauI	GCSGC	1 cut(s)	84
Tru1I	TTAA	3 cut(s)	327, 348, 417
Tru9I	TTAA	3 cut(s)	327, 348, 417
TscAI	CASTG	2 cut(s)	79, 279
TseI	GCWGC	1 cut(s)	302
TspRI	CASTG	2 cut(s)	79, 279
Vha464I	CTTAAG	1 cut(s)	326
VneI	GTGCAC	1 cut(s)	270
XapI	RAATTY	1 cut(s)	373
XceI	RCATGY	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.