Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007578

Physical Location & Seq

Genomic Coordinates Forward (+)

59390998 .. 59391562

Gene Structure 565 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26723

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGGAAACTTGCCCGAGAGACACGTTGAAGTTAGGGGTTTGCGCAAACCTTCTGGGGCTTGTGGACCTTCAAATTGGATCGCCAGAAACCAGTCCCTGCTGTGCACTGCTTGAAGGCTTGGCTGATTCACAGGCTGCTCTTTGTCTTTGCACCGCGCTTAAGGCCAATGTGCTTGGTATTAACTTGGACGTGCCAATTGCTTTAAGCTTACTTGTTAGTGCTTGCCAGAAAACTGTCCCTCCTGGTTTTCAATGTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hydrophob_seed

Protein Analysis

86

Amino Acids

8.8

Weight (kDa)

4.39

Isoelectric Point (pI)

38.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrophob_seed	PF14547	3 - 86	1.9e-28	Hydrophobic seed protein
LTP_2	PF14368	3 - 85	4e-06	Probable lipid transfer
Tryp_alpha_amyl	PF00234	4 - 85	6.4e-14	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0007578)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g28920
malus_domestica	MD15G1126700.v1.1
prunus_persica	Prupe.1G482500_v2.0.a1
pyrus_communis	pycom15g11430
rosa_chinensis	RchiOBHm_Chr6g0297661 RchiOBHm_Chr6g0297721 RchiOBHm_Chr6g0297741
rosa_laevigata	RLG00000011567 RLG00000011572
rosa_multiflora	Rmu_co8194776.1_g000001 Rmu_sc0007683.1_g000005 Rmu_sc0007847.1_g000004
rosa_roxburghii	Rroxscaffold_7G00170240 Rroxscaffold_7G00170260 Rroxscaffold_7G00179090
rosa_rugosa	Rorug06G0274800 Rorug06G0275100
rosa_samantha	Rh6AG385400 Rh6AG385600 Rh6BG394100 Rh6CG399900 Rh6DG386300
rosa_wichuraiana	Rw6G033580 Rw6G033610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	43
AccII	CGCG	1 cut(s)	155
AciI	CCGC	1 cut(s)	153
AclWI	GGATC	1 cut(s)	85
AflII	CTTAAG	1 cut(s)	158
AflIII	ACRYGT	1 cut(s)	21
AgsI	TTSAA	4 cut(s)	28, 71, 113, 251
AjiI	CACGTC	1 cut(s)	190
AjnI	CCWGG	1 cut(s)	241
AluBI	AGCT	1 cut(s)	207
AluI	AGCT	1 cut(s)	207
Alw21I	GWGCWC	1 cut(s)	106
Alw26I	GTCTC	1 cut(s)	12
Alw44I	GTGCAC	1 cut(s)	102
AlwI	GGATC	1 cut(s)	85
AlwNI	CAGNNNCTG	1 cut(s)	96
Ama87I	CYCGRG	1 cut(s)	13
AoxI	GGCC	1 cut(s)	162
ApaLI	GTGCAC	1 cut(s)	102
ApeKI	GCWGC	1 cut(s)	134
AspLEI	GCGC	2 cut(s)	44, 157
AspS9I	GGNCC	1 cut(s)	64
AvaI	CYCGRG	1 cut(s)	13
AvaII	GGWCC	1 cut(s)	64
BaeGI	GKGCMC	1 cut(s)	106
Bbv12I	GWGCWC	1 cut(s)	106
BbvI	GCAGC	1 cut(s)	121
BciT130I	CCWGG	1 cut(s)	243
BcoDI	GTCTC	1 cut(s)	12
BfrI	CTTAAG	1 cut(s)	158
BisI	GCNGC	1 cut(s)	135
BlsI	GCNGC	1 cut(s)	136
Bme1390I	CCNGG	1 cut(s)	243
Bme18I	GGWCC	1 cut(s)	64
BmeT110I	CYCGRG	1 cut(s)	13
BmgBI	CACGTC	1 cut(s)	190
BmgT120I	GGNCC	1 cut(s)	64
BmrFI	CCNGG	1 cut(s)	243
BsaXI	ACNNNNNCTCC	2 cut(s)	223, 253
Bse1I	ACTGG	1 cut(s)	90
BseBI	CCWGG	1 cut(s)	243
BseNI	ACTGG	1 cut(s)	90
BseSI	GKGCMC	1 cut(s)	106
BseXI	GCAGC	1 cut(s)	121
Bsh1236I	CGCG	1 cut(s)	155
BshFI	GGCC	1 cut(s)	164
BsiHKAI	GWGCWC	1 cut(s)	106
BsiHKCI	CYCGRG	1 cut(s)	13
BslFI	GGGAC	2 cut(s)	78, 221
BsmAI	GTCTC	1 cut(s)	12
BsmFI	GGGAC	2 cut(s)	78, 221
BsnI	GGCC	1 cut(s)	164
BsoBI	CYCGRG	1 cut(s)	13
Bsp1286I	GDGCHC	1 cut(s)	106
Bsp143I	GATC	1 cut(s)	77
BspACI	CCGC	1 cut(s)	153
BspANI	GGCC	1 cut(s)	164
BspFNI	CGCG	1 cut(s)	155
BspPI	GGATC	1 cut(s)	85
BspTI	CTTAAG	1 cut(s)	158
BsrI	ACTGG	1 cut(s)	90
BssMI	GATC	1 cut(s)	77
Bst2UI	CCWGG	1 cut(s)	243
Bst4CI	ACNGT	1 cut(s)	235
BstAFI	CTTAAG	1 cut(s)	158
BstC8I	GCNNGC	1 cut(s)	223
BstFNI	CGCG	1 cut(s)	155
BstHHI	GCGC	2 cut(s)	44, 157
BstKTI	GATC	1 cut(s)	80
BstMAI	GTCTC	1 cut(s)	12
BstMBI	GATC	1 cut(s)	77
BstMWI	GCNNNNNNNGC	1 cut(s)	161
BstNI	CCWGG	1 cut(s)	243
BstSCI	CCNGG	1 cut(s)	241
BstSLI	GKGCMC	1 cut(s)	106
BstUI	CGCG	1 cut(s)	155
BstV1I	GCAGC	1 cut(s)	121
BsuRI	GGCC	1 cut(s)	164
BtrI	CACGTC	1 cut(s)	190
BtsI	GCAGTG	1 cut(s)	104
BtsIMutI	CAGTG	1 cut(s)	104
Cac8I	GCNNGC	1 cut(s)	223
CaiI	CAGNNNCTG	1 cut(s)	96
CfoI	GCGC	2 cut(s)	44, 157
Cfr13I	GGNCC	1 cut(s)	64
CviJI	RGCY	6 cut(s)	58, 117, 122, 134, 164, 207
CviKI_1	RGCY	6 cut(s)	58, 117, 122, 134, 164, 207
DpnI	GATC	1 cut(s)	79
DpnII	GATC	1 cut(s)	77
Eco47I	GGWCC	1 cut(s)	64
Eco88I	CYCGRG	1 cut(s)	13
EcoRII	CCWGG	1 cut(s)	241
FaiI	YATR	1 cut(s)	259
FaqI	GGGAC	2 cut(s)	78, 221
Fnu4HI	GCNGC	1 cut(s)	135
Fsp4HI	GCNGC	1 cut(s)	135
FspI	TGCGCA	1 cut(s)	43
GlaI	GCGC	2 cut(s)	43, 156
GluI	GCNGC	1 cut(s)	135
HaeIII	GGCC	1 cut(s)	164
HhaI	GCGC	2 cut(s)	44, 157
Hin6I	GCGC	2 cut(s)	42, 155
HinP1I	GCGC	2 cut(s)	42, 155
HindIII	AAGCTT	1 cut(s)	205
HinfI	GANTC	1 cut(s)	125
Hpy166II	GTNNAC	2 cut(s)	64, 104
Hpy8I	GTNNAC	2 cut(s)	64, 104
HpyAV	CCTTC	3 cut(s)	59, 77, 107
HpyCH4III	ACNGT	1 cut(s)	235
HpyCH4IV	ACGT	2 cut(s)	23, 189
HpyCH4V	TGCA	3 cut(s)	104, 150, 257
HpyF10VI	GCNNNNNNNGC	1 cut(s)	161
HpySE526I	ACGT	2 cut(s)	23, 189
HspAI	GCGC	2 cut(s)	42, 155
Kzo9I	GATC	1 cut(s)	77
LpnPI	CCDG	8 cut(s)	38, 96, 103, 109, 116, 228, 239, 255
Lsp1109I	GCAGC	1 cut(s)	121
MaeII	ACGT	2 cut(s)	23, 189
MalI	GATC	1 cut(s)	79
MboI	GATC	1 cut(s)	77
MfeI	CAATTG	1 cut(s)	195
MhlI	GDGCHC	1 cut(s)	106
MluCI	AATT	2 cut(s)	72, 195
MnlI	CCTC	1 cut(s)	249
MseI	TTAA	3 cut(s)	159, 180, 203
MspCI	CTTAAG	1 cut(s)	158
MspR9I	CCNGG	1 cut(s)	243
MunI	CAATTG	1 cut(s)	195
MvaI	CCWGG	1 cut(s)	243
MvnI	CGCG	1 cut(s)	155
MwoI	GCNNNNNNNGC	1 cut(s)	161
NdeII	GATC	1 cut(s)	77
NsbI	TGCGCA	1 cut(s)	43
PfeI	GAWTC	1 cut(s)	125
PkrI	GCNGC	1 cut(s)	136
Psp6I	CCWGG	1 cut(s)	241
PspGI	CCWGG	1 cut(s)	241
PspPI	GGNCC	1 cut(s)	64
PstNI	CAGNNNCTG	1 cut(s)	96
SaqAI	TTAA	3 cut(s)	159, 180, 203
SatI	GCNGC	1 cut(s)	135
Sau3AI	GATC	1 cut(s)	77
Sau96I	GGNCC	1 cut(s)	64
ScrFI	CCNGG	1 cut(s)	243
SduI	GDGCHC	1 cut(s)	106
SetI	ASST	5 cut(s)	26, 51, 69, 192, 209
SinI	GGWCC	1 cut(s)	64
SmlI	CTYRAG	1 cut(s)	158
SmoI	CTYRAG	1 cut(s)	158
Sse9I	AATT	2 cut(s)	72, 195
SsiI	CCGC	1 cut(s)	153
StyD4I	CCNGG	1 cut(s)	241
TaaI	ACNGT	1 cut(s)	235
TaiI	ACGT	2 cut(s)	26, 192
TasI	AATT	2 cut(s)	72, 195
TfiI	GAWTC	1 cut(s)	125
Tru1I	TTAA	3 cut(s)	159, 180, 203
Tru9I	TTAA	3 cut(s)	159, 180, 203
TscAI	CASTG	1 cut(s)	111
TseI	GCWGC	1 cut(s)	134
TspRI	CASTG	1 cut(s)	111
Vha464I	CTTAAG	1 cut(s)	158
VneI	GTGCAC	1 cut(s)	102
VpaK11BI	GGWCC	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.