Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0007578

Physical Location & Seq

Genomic Coordinates Reverse (-)

9208073 .. 9208450

Gene Structure 378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1126700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGCCTTCTACCAAGCAGCTCTCAGCAACCCTCCTCATCTTCTCAATCCTTTTCTACTCATCCACATTCTCCATTGCTTGCGGCACATGCAAGCCTGCTCTAGCGCCCGCGCCTATGGCTGAAACCTGTCCTAAAGACACACTGAAGCTAGGGGCTTGTGTGGACCTTCTAGGACTTGTCAACCTCCAAATCGGAAGCCCGCCTACAAGTGGTTGCTGTGCGTTGCTTGAAGGGTTGTCCGATTTGGAGGCTGCTATTTGCCTCTGCACTGTGATCAAGGCCAATGCGCTAGGGCTCAACATGGAAGTGCCAGTAGCTTTGAGCTTGCTTGTTAGTGCCTGCCAGAAAACAGTCCCTCCTGGCTTCAAATGTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hydrophob_seed

Protein Analysis

126

Amino Acids

12.85

Weight (kDa)

5.29

Isoelectric Point (pI)

51.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	32 - 124	6.7e-09	Probable lipid transfer
Hydrophob_seed	PF14547	42 - 124	7.4e-27	Hydrophobic seed protein
Tryp_alpha_amyl	PF00234	43 - 124	7.3e-13	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007578)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g28920
malus_domestica	MD15G1126700.v1.1
prunus_persica	Prupe.1G482500_v2.0.a1
pyrus_communis	pycom15g11430
rosa_chinensis	RchiOBHm_Chr6g0297661 RchiOBHm_Chr6g0297721 RchiOBHm_Chr6g0297741
rosa_laevigata	RLG00000011567 RLG00000011572
rosa_multiflora	Rmu_co8194776.1_g000001 Rmu_sc0007683.1_g000005 Rmu_sc0007847.1_g000004
rosa_roxburghii	Rroxscaffold_7G00170240 Rroxscaffold_7G00170260 Rroxscaffold_7G00179090
rosa_rugosa	Rorug06G0274800 Rorug06G0275100
rosa_samantha	Rh6AG385400 Rh6AG385600 Rh6BG394100 Rh6CG399900 Rh6DG386300
rosa_wichuraiana	Rw6G033580 Rw6G033610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	110
AciI	CCGC	3 cut(s)	81, 108, 200
AcuI	CTGAAG	1 cut(s)	164
AfiI	CCNNNNNNNGG	1 cut(s)	209
AgsI	TTSAA	2 cut(s)	230, 367
AjnI	CCWGG	1 cut(s)	358
AluBI	AGCT	4 cut(s)	19, 148, 317, 324
AluI	AGCT	4 cut(s)	19, 148, 317, 324
AoxI	GGCC	1 cut(s)	279
ApeKI	GCWGC	2 cut(s)	16, 251
AspLEI	GCGC	3 cut(s)	106, 112, 289
AspS9I	GGNCC	1 cut(s)	163
AvaII	GGWCC	1 cut(s)	163
BanII	GRGCYC	1 cut(s)	297
BarI	GAAGNNNNNNTAC	2 cut(s)	187, 219
BbvI	GCAGC	2 cut(s)	28, 238
BciT130I	CCWGG	1 cut(s)	360
BclI	TGATCA	1 cut(s)	273
BfaI	CTAG	4 cut(s)	101, 149, 170, 290
BfoI	RGCGCY	1 cut(s)	107
BisI	GCNGC	3 cut(s)	17, 82, 252
BlsI	GCNGC	3 cut(s)	18, 83, 253
Bme1390I	CCNGG	1 cut(s)	360
Bme18I	GGWCC	1 cut(s)	163
BmgT120I	GGNCC	1 cut(s)	163
BmrFI	CCNGG	1 cut(s)	360
BsaXI	ACNNNNNCTCC	2 cut(s)	340, 370
Bsc4I	CCNNNNNNNGG	1 cut(s)	209
Bse1I	ACTGG	1 cut(s)	311
Bse3DI	GCAATG	1 cut(s)	72
BseBI	CCWGG	1 cut(s)	360
BseGI	GGATG	1 cut(s)	59
BseLI	CCNNNNNNNGG	1 cut(s)	209
BseMI	GCAATG	1 cut(s)	72
BseMII	CTCAG	1 cut(s)	36
BseNI	ACTGG	1 cut(s)	311
BseRI	GAGGAG	1 cut(s)	23
BseXI	GCAGC	2 cut(s)	28, 238
BsgI	GTGCAG	1 cut(s)	250
Bsh1236I	CGCG	1 cut(s)	110
BshFI	GGCC	1 cut(s)	281
BslFI	GGGAC	1 cut(s)	338
BslI	CCNNNNNNNGG	1 cut(s)	209
BsmFI	GGGAC	1 cut(s)	338
BsnI	GGCC	1 cut(s)	281
Bsp1286I	GDGCHC	1 cut(s)	297
Bsp143I	GATC	1 cut(s)	273
BspACI	CCGC	3 cut(s)	81, 108, 200
BspANI	GGCC	1 cut(s)	281
BspCNI	CTCAG	1 cut(s)	35
BspFNI	CGCG	1 cut(s)	110
BsrDI	GCAATG	1 cut(s)	72
BsrI	ACTGG	1 cut(s)	311
BssMI	GATC	1 cut(s)	273
Bst2UI	CCWGG	1 cut(s)	360
Bst4CI	ACNGT	2 cut(s)	271, 352
BstC8I	GCNNGC	7 cut(s)	79, 92, 96, 108, 200, 326, 340
BstDEI	CTNAG	1 cut(s)	22
BstF5I	GGATG	1 cut(s)	59
BstFNI	CGCG	1 cut(s)	110
BstH2I	RGCGCY	1 cut(s)	107
BstHHI	GCGC	3 cut(s)	106, 112, 289
BstKTI	GATC	1 cut(s)	276
BstMBI	GATC	1 cut(s)	273
BstMWI	GCNNNNNNNGC	2 cut(s)	87, 116
BstNI	CCWGG	1 cut(s)	360
BstNSI	RCATGY	1 cut(s)	90
BstSCI	CCNGG	1 cut(s)	358
BstUI	CGCG	1 cut(s)	110
BstV1I	GCAGC	2 cut(s)	28, 238
BsuRI	GGCC	1 cut(s)	281
BtsCI	GGATG	1 cut(s)	59
BtsIMutI	CAGTG	2 cut(s)	140, 267
Cac8I	GCNNGC	7 cut(s)	79, 92, 96, 108, 200, 326, 340
CfoI	GCGC	3 cut(s)	106, 112, 289
Cfr13I	GGNCC	1 cut(s)	163
CviAII	CATG	2 cut(s)	87, 301
DdeI	CTNAG	1 cut(s)	22
DpnI	GATC	1 cut(s)	275
DpnII	GATC	1 cut(s)	273
Eco24I	GRGCYC	1 cut(s)	297
Eco47I	GGWCC	1 cut(s)	163
Eco57I	CTGAAG	1 cut(s)	164
EcoRII	CCWGG	1 cut(s)	358
EcoT38I	GRGCYC	1 cut(s)	297
FaeI	CATG	2 cut(s)	90, 304
FaiI	YATR	3 cut(s)	88, 116, 302
FaqI	GGGAC	1 cut(s)	338
FatI	CATG	2 cut(s)	86, 300
FauI	CCCGC	2 cut(s)	115, 207
FbaI	TGATCA	1 cut(s)	273
Fnu4HI	GCNGC	3 cut(s)	17, 82, 252
FokI	GGATG	1 cut(s)	46
FriOI	GRGCYC	1 cut(s)	297
Fsp4HI	GCNGC	3 cut(s)	17, 82, 252
FspBI	CTAG	4 cut(s)	101, 149, 170, 290
GlaI	GCGC	3 cut(s)	105, 111, 288
GluI	GCNGC	3 cut(s)	17, 82, 252
HaeII	RGCGCY	1 cut(s)	107
HaeIII	GGCC	1 cut(s)	281
HhaI	GCGC	3 cut(s)	106, 112, 289
Hin1II	CATG	2 cut(s)	90, 304
Hin6I	GCGC	3 cut(s)	104, 110, 287
HinP1I	GCGC	3 cut(s)	104, 110, 287
HincII	GTYRAC	1 cut(s)	181
HindII	GTYRAC	1 cut(s)	181
Hpy166II	GTNNAC	2 cut(s)	163, 181
Hpy188I	TCNGA	2 cut(s)	194, 241
Hpy8I	GTNNAC	2 cut(s)	163, 181
HpyAV	CCTTC	3 cut(s)	15, 176, 224
HpyCH4III	ACNGT	2 cut(s)	271, 352
HpyCH4V	TGCA	2 cut(s)	90, 267
HpyF10VI	GCNNNNNNNGC	2 cut(s)	87, 116
HpyF3I	CTNAG	1 cut(s)	22
Hsp92II	CATG	2 cut(s)	90, 304
HspAI	GCGC	3 cut(s)	104, 110, 287
Ksp22I	TGATCA	1 cut(s)	273
Kzo9I	GATC	1 cut(s)	273
LpnPI	CCDG	7 cut(s)	108, 139, 324, 345, 352, 356, 372
Lsp1109I	GCAGC	2 cut(s)	28, 238
MaeI	CTAG	4 cut(s)	101, 149, 170, 290
MalI	GATC	1 cut(s)	275
MboI	GATC	1 cut(s)	273
MboII	GAAGA	1 cut(s)	31
MhlI	GDGCHC	1 cut(s)	297
MnlI	CCTC	6 cut(s)	41, 44, 194, 241, 272, 366
MslI	CAYNNNNRTG	1 cut(s)	305
MspR9I	CCNGG	1 cut(s)	360
MvaI	CCWGG	1 cut(s)	360
MvnI	CGCG	1 cut(s)	110
MwoI	GCNNNNNNNGC	2 cut(s)	87, 116
NdeII	GATC	1 cut(s)	273
NlaIII	CATG	2 cut(s)	90, 304
NspI	RCATGY	1 cut(s)	90
PkrI	GCNGC	3 cut(s)	18, 83, 253
Psp6I	CCWGG	1 cut(s)	358
PspGI	CCWGG	1 cut(s)	358
PspPI	GGNCC	1 cut(s)	163
RseI	CAYNNNNRTG	1 cut(s)	305
SatI	GCNGC	3 cut(s)	17, 82, 252
Sau3AI	GATC	1 cut(s)	273
Sau96I	GGNCC	1 cut(s)	163
ScrFI	CCNGG	1 cut(s)	360
SduI	GDGCHC	1 cut(s)	297
SetI	ASST	7 cut(s)	21, 128, 150, 168, 186, 319, 326
SinI	GGWCC	1 cut(s)	163
SmiMI	CAYNNNNRTG	1 cut(s)	305
SsiI	CCGC	3 cut(s)	81, 108, 200
SspMI	CTAG	4 cut(s)	101, 149, 170, 290
StyD4I	CCNGG	1 cut(s)	358
TaaI	ACNGT	2 cut(s)	271, 352
TauI	GCSGC	1 cut(s)	84
TscAI	CASTG	2 cut(s)	147, 274
TseI	GCWGC	2 cut(s)	16, 251
TspRI	CASTG	2 cut(s)	147, 274
VpaK11BI	GGWCC	1 cut(s)	163
XceI	RCATGY	1 cut(s)	90
XspI	CTAG	4 cut(s)	101, 149, 170, 290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.