Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007578

Physical Location & Seq

Genomic Coordinates Forward (+)

59414746 .. 59415650

Gene Structure 905 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26725

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGCCTCTTCCAACAAGCTCTCTGCAGCTCTTCTCATCTTCTCAATCCTTCTCTACTCTTCCACATTCTCCAATGCTTGCGGTACATGCAAGCCTCGCCCCAAGCCTACACCACCAACTCCAGCTGTCGCAAAGTGCCCAAAAGACACGTTGAAGCTAGGAGTTTGTGCAGACCTTCTAGGGCTTCTGAATCTTAAAATTGGAGACCCTCCAACCAGTCCTTGCTGTGCATTGCTTGAAGGCCTGGCTGATGTGGAGGCTGCGCTTTGTCTCTGCACTGCTCTCAAGGCCAATGTGCTTGGTACTAATTTGGATGTGCCAATTGCTTTGAGCTTGCTTCTTAGTGCTTGCCAGAAAACTGTACCTTCTGGTTTTCAATGCGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hydrophob_seed

Protein Analysis

128

Amino Acids

13.15

Weight (kDa)

8.04

Isoelectric Point (pI)

32.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	38 - 127	5.5e-06	Probable lipid transfer
Hydrophob_seed	PF14547	46 - 127	2.6e-26	Hydrophobic seed protein
Tryp_alpha_amyl	PF00234	46 - 127	1.5e-14	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0007578)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g28920
malus_domestica	MD15G1126700.v1.1
prunus_persica	Prupe.1G482500_v2.0.a1
pyrus_communis	pycom15g11430
rosa_chinensis	RchiOBHm_Chr6g0297661 RchiOBHm_Chr6g0297721 RchiOBHm_Chr6g0297741
rosa_laevigata	RLG00000011567 RLG00000011572
rosa_multiflora	Rmu_co8194776.1_g000001 Rmu_sc0007683.1_g000005 Rmu_sc0007847.1_g000004
rosa_roxburghii	Rroxscaffold_7G00170240 Rroxscaffold_7G00170260 Rroxscaffold_7G00179090
rosa_rugosa	Rorug06G0274800 Rorug06G0275100
rosa_samantha	Rh6AG385400 Rh6AG385600 Rh6BG394100 Rh6CG399900 Rh6DG386300
rosa_wichuraiana	Rw6G033580 Rw6G033610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	81
AfaI	GTAC	3 cut(s)	85, 304, 363
AflIII	ACRYGT	1 cut(s)	147
AgsI	TTSAA	3 cut(s)	154, 239, 377
AjnI	CCWGG	1 cut(s)	243
AluBI	AGCT	5 cut(s)	19, 29, 125, 157, 333
AluI	AGCT	5 cut(s)	19, 29, 125, 157, 333
Alw26I	GTCTC	2 cut(s)	198, 275
AoxI	GGCC	3 cut(s)	3, 241, 288
ApeKI	GCWGC	2 cut(s)	26, 260
AspLEI	GCGC	1 cut(s)	265
BaeGI	GKGCMC	1 cut(s)	140
BbvI	GCAGC	2 cut(s)	38, 247
BciT130I	CCWGG	1 cut(s)	245
BcoDI	GTCTC	2 cut(s)	198, 275
BfaI	CTAG	2 cut(s)	158, 179
BfmI	CTRYAG	1 cut(s)	24
BisI	GCNGC	2 cut(s)	27, 261
BlsI	GCNGC	2 cut(s)	28, 262
Bme1390I	CCNGG	1 cut(s)	245
BmrFI	CCNGG	1 cut(s)	245
BpmI	CTGGAG	1 cut(s)	105
BpuEI	CTTGAG	1 cut(s)	269
BsaI	GGTCTC	1 cut(s)	198
Bse1I	ACTGG	1 cut(s)	216
Bse3DI	GCAATG	1 cut(s)	230
BseBI	CCWGG	1 cut(s)	245
BseGI	GGATG	1 cut(s)	319
BseMI	GCAATG	1 cut(s)	230
BseNI	ACTGG	1 cut(s)	216
BseSI	GKGCMC	1 cut(s)	140
BseXI	GCAGC	2 cut(s)	38, 247
BsgI	GTGCAG	2 cut(s)	189, 259
BshFI	GGCC	3 cut(s)	5, 243, 290
BsmAI	GTCTC	2 cut(s)	198, 275
BsnI	GGCC	3 cut(s)	5, 243, 290
Bso31I	GGTCTC	1 cut(s)	198
Bsp1286I	GDGCHC	1 cut(s)	140
BspACI	CCGC	1 cut(s)	81
BspANI	GGCC	3 cut(s)	5, 243, 290
BspMAI	CTGCAG	1 cut(s)	28
BspQI	GCTCTTC	1 cut(s)	36
BspTNI	GGTCTC	1 cut(s)	198
BsrDI	GCAATG	1 cut(s)	230
BsrI	ACTGG	1 cut(s)	216
Bst2UI	CCWGG	1 cut(s)	245
Bst4CI	ACNGT	1 cut(s)	361
Bst6I	CTCTTC	3 cut(s)	13, 36, 64
BstC8I	GCNNGC	4 cut(s)	79, 92, 335, 349
BstDEI	CTNAG	1 cut(s)	341
BstF5I	GGATG	1 cut(s)	319
BstHHI	GCGC	1 cut(s)	265
BstMAI	GTCTC	2 cut(s)	198, 275
BstMWI	GCNNNNNNNGC	3 cut(s)	87, 96, 287
BstNI	CCWGG	1 cut(s)	245
BstNSI	RCATGY	1 cut(s)	90
BstSCI	CCNGG	1 cut(s)	243
BstSFI	CTRYAG	1 cut(s)	24
BstSLI	GKGCMC	1 cut(s)	140
BstV1I	GCAGC	2 cut(s)	38, 247
BsuRI	GGCC	3 cut(s)	5, 243, 290
BtsCI	GGATG	1 cut(s)	319
BtsI	GCAGTG	1 cut(s)	276
BtsIMutI	CAGTG	1 cut(s)	276
Cac8I	GCNNGC	4 cut(s)	79, 92, 335, 349
CfoI	GCGC	1 cut(s)	265
Csp6I	GTAC	3 cut(s)	84, 303, 362
CviAII	CATG	1 cut(s)	87
CviQI	GTAC	3 cut(s)	84, 303, 362
DdeI	CTNAG	1 cut(s)	341
Eam1104I	CTCTTC	3 cut(s)	13, 36, 64
EarI	CTCTTC	3 cut(s)	13, 36, 64
Eco147I	AGGCCT	1 cut(s)	243
Eco31I	GGTCTC	1 cut(s)	198
EcoRII	CCWGG	1 cut(s)	243
FaeI	CATG	1 cut(s)	90
FaiI	YATR	1 cut(s)	88
FatI	CATG	1 cut(s)	86
Fnu4HI	GCNGC	2 cut(s)	27, 261
FokI	GGATG	1 cut(s)	326
Fsp4HI	GCNGC	2 cut(s)	27, 261
FspBI	CTAG	2 cut(s)	158, 179
GlaI	GCGC	1 cut(s)	264
GluI	GCNGC	2 cut(s)	27, 261
GsuI	CTGGAG	1 cut(s)	105
HaeIII	GGCC	3 cut(s)	5, 243, 290
HhaI	GCGC	1 cut(s)	265
Hin1II	CATG	1 cut(s)	90
Hin6I	GCGC	1 cut(s)	263
HinP1I	GCGC	1 cut(s)	263
HinfI	GANTC	1 cut(s)	190
Hpy188I	TCNGA	1 cut(s)	189
HpyAV	CCTTC	4 cut(s)	59, 185, 233, 375
HpyCH4III	ACNGT	1 cut(s)	361
HpyCH4IV	ACGT	1 cut(s)	149
HpyCH4V	TGCA	5 cut(s)	26, 90, 170, 230, 276
HpyF10VI	GCNNNNNNNGC	3 cut(s)	87, 96, 287
HpyF3I	CTNAG	1 cut(s)	341
HpySE526I	ACGT	1 cut(s)	149
Hsp92II	CATG	1 cut(s)	90
HspAI	GCGC	1 cut(s)	263
LguI	GCTCTTC	1 cut(s)	36
LpnPI	CCDG	6 cut(s)	135, 229, 230, 257, 354, 365
Lsp1109I	GCAGC	2 cut(s)	38, 247
MaeI	CTAG	2 cut(s)	158, 179
MaeII	ACGT	1 cut(s)	149
MboII	GAAGA	3 cut(s)	23, 31, 51
MfeI	CAATTG	1 cut(s)	321
MhlI	GDGCHC	1 cut(s)	140
MluCI	AATT	3 cut(s)	198, 307, 321
MmeI	TCCRAC	2 cut(s)	36, 236
MnlI	CCTC	4 cut(s)	16, 105, 219, 250
MseI	TTAA	1 cut(s)	195
MspA1I	CMGCKG	1 cut(s)	125
MspR9I	CCNGG	1 cut(s)	245
MunI	CAATTG	1 cut(s)	321
MvaI	CCWGG	1 cut(s)	245
MwoI	GCNNNNNNNGC	3 cut(s)	87, 96, 287
NlaIII	CATG	1 cut(s)	90
NspI	RCATGY	1 cut(s)	90
PceI	AGGCCT	1 cut(s)	243
PciSI	GCTCTTC	1 cut(s)	36
PfeI	GAWTC	1 cut(s)	190
PkrI	GCNGC	2 cut(s)	28, 262
Psp6I	CCWGG	1 cut(s)	243
PspGI	CCWGG	1 cut(s)	243
PstI	CTGCAG	1 cut(s)	28
PvuII	CAGCTG	1 cut(s)	125
RsaI	GTAC	3 cut(s)	85, 304, 363
RsaNI	GTAC	3 cut(s)	84, 303, 362
SapI	GCTCTTC	1 cut(s)	36
SaqAI	TTAA	1 cut(s)	195
SatI	GCNGC	2 cut(s)	27, 261
ScrFI	CCNGG	1 cut(s)	245
SduI	GDGCHC	1 cut(s)	140
SetI	ASST	8 cut(s)	21, 31, 127, 152, 159, 177, 335, 367
SfcI	CTRYAG	1 cut(s)	24
SmlI	CTYRAG	1 cut(s)	284
SmoI	CTYRAG	1 cut(s)	284
Sse9I	AATT	3 cut(s)	198, 307, 321
SseBI	AGGCCT	1 cut(s)	243
SsiI	CCGC	1 cut(s)	81
SspMI	CTAG	2 cut(s)	158, 179
StuI	AGGCCT	1 cut(s)	243
StyD4I	CCNGG	1 cut(s)	243
TaaI	ACNGT	1 cut(s)	361
TaiI	ACGT	1 cut(s)	152
TasI	AATT	3 cut(s)	198, 307, 321
TfiI	GAWTC	1 cut(s)	190
Tru1I	TTAA	1 cut(s)	195
Tru9I	TTAA	1 cut(s)	195
TscAI	CASTG	1 cut(s)	283
TseI	GCWGC	2 cut(s)	26, 260
TspRI	CASTG	1 cut(s)	283
XceI	RCATGY	1 cut(s)	90
XspI	CTAG	2 cut(s)	158, 179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.