Hydrophobic seed protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_2g28920 |
| malus_domestica | MD15G1126700.v1.1 |
| prunus_persica | Prupe.1G482500_v2.0.a1 |
| pyrus_communis | pycom15g11430 |
| rosa_chinensis | RchiOBHm_Chr6g0297661 RchiOBHm_Chr6g0297721 RchiOBHm_Chr6g0297741 |
| rosa_laevigata | RLG00000011567 RLG00000011572 |
| rosa_multiflora | Rmu_co8194776.1_g000001 Rmu_sc0007683.1_g000005 Rmu_sc0007847.1_g000004 |
| rosa_roxburghii | Rroxscaffold_7G00170240 Rroxscaffold_7G00170260 Rroxscaffold_7G00179090 |
| rosa_rugosa | Rorug06G0274800 Rorug06G0275100 |
| rosa_samantha | Rh6AG385400 Rh6AG385600 Rh6BG394100 Rh6CG399900 Rh6DG386300 |
| rosa_wichuraiana | Rw6G033580 Rw6G033610 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 29 |
| AciI | CCGC | 2 cut(s) | 27, 81 |
| AfaI | GTAC | 2 cut(s) | 85, 363 |
| AflIII | ACRYGT | 1 cut(s) | 147 |
| AgsI | TTSAA | 3 cut(s) | 154, 239, 377 |
| AjnI | CCWGG | 1 cut(s) | 243 |
| AluBI | AGCT | 4 cut(s) | 19, 125, 157, 333 |
| AluI | AGCT | 4 cut(s) | 19, 125, 157, 333 |
| Alw26I | GTCTC | 2 cut(s) | 198, 275 |
| AoxI | GGCC | 3 cut(s) | 3, 241, 288 |
| ApeKI | GCWGC | 1 cut(s) | 260 |
| AseI | ATTAAT | 2 cut(s) | 306, 324 |
| AspLEI | GCGC | 1 cut(s) | 265 |
| AsuHPI | GGTGA | 1 cut(s) | 89 |
| BaeGI | GKGCMC | 1 cut(s) | 140 |
| BbvI | GCAGC | 1 cut(s) | 247 |
| BciT130I | CCWGG | 1 cut(s) | 245 |
| BcoDI | GTCTC | 2 cut(s) | 198, 275 |
| BfaI | CTAG | 2 cut(s) | 158, 179 |
| BisI | GCNGC | 2 cut(s) | 27, 261 |
| BlsI | GCNGC | 2 cut(s) | 28, 262 |
| Bme1390I | CCNGG | 1 cut(s) | 245 |
| BmrFI | CCNGG | 1 cut(s) | 245 |
| BpmI | CTGGAG | 2 cut(s) | 55, 105 |
| BpuEI | CTTGAG | 1 cut(s) | 269 |
| BsaI | GGTCTC | 1 cut(s) | 198 |
| BsaJI | CCNNGG | 1 cut(s) | 102 |
| Bse1I | ACTGG | 2 cut(s) | 72, 216 |
| Bse3DI | GCAATG | 1 cut(s) | 230 |
| BseBI | CCWGG | 1 cut(s) | 245 |
| BseDI | CCNNGG | 1 cut(s) | 102 |
| BseGI | GGATG | 1 cut(s) | 319 |
| BseMI | GCAATG | 1 cut(s) | 230 |
| BseMII | CTCAG | 1 cut(s) | 57 |
| BseNI | ACTGG | 2 cut(s) | 72, 216 |
| BseSI | GKGCMC | 1 cut(s) | 140 |
| BseXI | GCAGC | 1 cut(s) | 247 |
| BsgI | GTGCAG | 2 cut(s) | 189, 259 |
| BshFI | GGCC | 3 cut(s) | 5, 243, 290 |
| BsmAI | GTCTC | 2 cut(s) | 198, 275 |
| BsnI | GGCC | 3 cut(s) | 5, 243, 290 |
| Bso31I | GGTCTC | 1 cut(s) | 198 |
| Bsp1286I | GDGCHC | 1 cut(s) | 140 |
| BspACI | CCGC | 2 cut(s) | 27, 81 |
| BspANI | GGCC | 3 cut(s) | 5, 243, 290 |
| BspCNI | CTCAG | 1 cut(s) | 56 |
| BspQI | GCTCTTC | 1 cut(s) | 36 |
| BspTNI | GGTCTC | 1 cut(s) | 198 |
| BsrBI | CCGCTC | 1 cut(s) | 29 |
| BsrDI | GCAATG | 1 cut(s) | 230 |
| BsrI | ACTGG | 2 cut(s) | 72, 216 |
| BssECI | CCNNGG | 1 cut(s) | 102 |
| BssT1I | CCWWGG | 1 cut(s) | 102 |
| Bst2UI | CCWGG | 1 cut(s) | 245 |
| Bst4CI | ACNGT | 1 cut(s) | 361 |
| Bst6I | CTCTTC | 3 cut(s) | 13, 36, 64 |
| BstC8I | GCNNGC | 4 cut(s) | 79, 92, 335, 349 |
| BstDEI | CTNAG | 2 cut(s) | 43, 341 |
| BstF5I | GGATG | 1 cut(s) | 319 |
| BstHHI | GCGC | 1 cut(s) | 265 |
| BstMAI | GTCTC | 2 cut(s) | 198, 275 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 87, 287 |
| BstNI | CCWGG | 1 cut(s) | 245 |
| BstNSI | RCATGY | 1 cut(s) | 90 |
| BstSCI | CCNGG | 1 cut(s) | 243 |
| BstSLI | GKGCMC | 1 cut(s) | 140 |
| BstV1I | GCAGC | 1 cut(s) | 247 |
| BsuRI | GGCC | 3 cut(s) | 5, 243, 290 |
| BtsCI | GGATG | 1 cut(s) | 319 |
| BtsI | GCAGTG | 1 cut(s) | 276 |
| BtsIMutI | CAGTG | 2 cut(s) | 79, 276 |
| Cac8I | GCNNGC | 4 cut(s) | 79, 92, 335, 349 |
| CfoI | GCGC | 1 cut(s) | 265 |
| Csp6I | GTAC | 2 cut(s) | 84, 362 |
| CviAII | CATG | 1 cut(s) | 87 |
| CviQI | GTAC | 2 cut(s) | 84, 362 |
| DdeI | CTNAG | 2 cut(s) | 43, 341 |
| Eam1104I | CTCTTC | 3 cut(s) | 13, 36, 64 |
| EarI | CTCTTC | 3 cut(s) | 13, 36, 64 |
| Eco130I | CCWWGG | 1 cut(s) | 102 |
| Eco147I | AGGCCT | 1 cut(s) | 243 |
| Eco31I | GGTCTC | 1 cut(s) | 198 |
| EcoRII | CCWGG | 1 cut(s) | 243 |
| EcoT14I | CCWWGG | 1 cut(s) | 102 |
| ErhI | CCWWGG | 1 cut(s) | 102 |
| FaeI | CATG | 1 cut(s) | 90 |
| FaiI | YATR | 1 cut(s) | 88 |
| FatI | CATG | 1 cut(s) | 86 |
| Fnu4HI | GCNGC | 2 cut(s) | 27, 261 |
| FokI | GGATG | 1 cut(s) | 326 |
| Fsp4HI | GCNGC | 2 cut(s) | 27, 261 |
| FspBI | CTAG | 2 cut(s) | 158, 179 |
| GlaI | GCGC | 1 cut(s) | 264 |
| GluI | GCNGC | 2 cut(s) | 27, 261 |
| GsuI | CTGGAG | 2 cut(s) | 55, 105 |
| HaeIII | GGCC | 3 cut(s) | 5, 243, 290 |
| HhaI | GCGC | 1 cut(s) | 265 |
| Hin1II | CATG | 1 cut(s) | 90 |
| Hin6I | GCGC | 1 cut(s) | 263 |
| HinP1I | GCGC | 1 cut(s) | 263 |
| HinfI | GANTC | 1 cut(s) | 190 |
| HphI | GGTGA | 1 cut(s) | 89 |
| HpyAV | CCTTC | 4 cut(s) | 59, 185, 233, 375 |
| HpyCH4III | ACNGT | 1 cut(s) | 361 |
| HpyCH4IV | ACGT | 1 cut(s) | 149 |
| HpyCH4V | TGCA | 4 cut(s) | 90, 170, 230, 276 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 87, 287 |
| HpyF3I | CTNAG | 2 cut(s) | 43, 341 |
| HpySE526I | ACGT | 1 cut(s) | 149 |
| Hsp92II | CATG | 1 cut(s) | 90 |
| HspAI | GCGC | 1 cut(s) | 263 |
| LguI | GCTCTTC | 1 cut(s) | 36 |
| LpnPI | CCDG | 7 cut(s) | 85, 135, 229, 230, 257, 354, 365 |
| Lsp1109I | GCAGC | 1 cut(s) | 247 |
| MaeI | CTAG | 2 cut(s) | 158, 179 |
| MaeII | ACGT | 1 cut(s) | 149 |
| MbiI | CCGCTC | 1 cut(s) | 29 |
| MboII | GAAGA | 3 cut(s) | 23, 31, 51 |
| MhlI | GDGCHC | 1 cut(s) | 140 |
| MluCI | AATT | 4 cut(s) | 198, 307, 321, 325 |
| MmeI | TCCRAC | 2 cut(s) | 36, 236 |
| MnlI | CCTC | 4 cut(s) | 16, 105, 219, 250 |
| MseI | TTAA | 2 cut(s) | 306, 324 |
| MspA1I | CMGCKG | 1 cut(s) | 125 |
| MspR9I | CCNGG | 1 cut(s) | 245 |
| MvaI | CCWGG | 1 cut(s) | 245 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 87, 287 |
| NlaIII | CATG | 1 cut(s) | 90 |
| NspI | RCATGY | 1 cut(s) | 90 |
| PceI | AGGCCT | 1 cut(s) | 243 |
| PciSI | GCTCTTC | 1 cut(s) | 36 |
| PfeI | GAWTC | 1 cut(s) | 190 |
| PkrI | GCNGC | 2 cut(s) | 28, 262 |
| PshBI | ATTAAT | 2 cut(s) | 306, 324 |
| Psp6I | CCWGG | 1 cut(s) | 243 |
| PspGI | CCWGG | 1 cut(s) | 243 |
| PvuII | CAGCTG | 1 cut(s) | 125 |
| RsaI | GTAC | 2 cut(s) | 85, 363 |
| RsaNI | GTAC | 2 cut(s) | 84, 362 |
| SapI | GCTCTTC | 1 cut(s) | 36 |
| SaqAI | TTAA | 2 cut(s) | 306, 324 |
| SatI | GCNGC | 2 cut(s) | 27, 261 |
| ScrFI | CCNGG | 1 cut(s) | 245 |
| SduI | GDGCHC | 1 cut(s) | 140 |
| SetI | ASST | 7 cut(s) | 21, 127, 152, 159, 177, 335, 367 |
| SmlI | CTYRAG | 1 cut(s) | 284 |
| SmoI | CTYRAG | 1 cut(s) | 284 |
| Sse9I | AATT | 4 cut(s) | 198, 307, 321, 325 |
| SseBI | AGGCCT | 1 cut(s) | 243 |
| SsiI | CCGC | 2 cut(s) | 27, 81 |
| SspMI | CTAG | 2 cut(s) | 158, 179 |
| StuI | AGGCCT | 1 cut(s) | 243 |
| StyD4I | CCNGG | 1 cut(s) | 243 |
| StyI | CCWWGG | 1 cut(s) | 102 |
| TaaI | ACNGT | 1 cut(s) | 361 |
| TaiI | ACGT | 1 cut(s) | 152 |
| TasI | AATT | 4 cut(s) | 198, 307, 321, 325 |
| TauI | GCSGC | 1 cut(s) | 29 |
| TfiI | GAWTC | 1 cut(s) | 190 |
| Tru1I | TTAA | 2 cut(s) | 306, 324 |
| Tru9I | TTAA | 2 cut(s) | 306, 324 |
| TscAI | CASTG | 2 cut(s) | 79, 283 |
| TseI | GCWGC | 1 cut(s) | 260 |
| TspRI | CASTG | 2 cut(s) | 79, 283 |
| VspI | ATTAAT | 2 cut(s) | 306, 324 |
| XceI | RCATGY | 1 cut(s) | 90 |
| XspI | CTAG | 2 cut(s) | 158, 179 |