Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0007578

Physical Location & Seq

Genomic Coordinates Reverse (-)

40256379 .. 40256768

Gene Structure 390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G482500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGCTTCCAACAAGCAGCTCTCTGCAACCATTCTCATCTTTTCAATCCTTTTCTACTCATCAACATTCTCTCTTGCTTGCCACACCTGCAAGCCTCACCCCATGCCTCCCGCACCAGCACCCCAACCTGAAACTTGCCCAAAAGACACATTGAAGTTGGGGGTTTGTATGGATCTTCTAGGACTTGTTAACCTTCCAGTTGGGACCCCTCCTACAAGCAAGTGCTGTGCATTGCTTGAAGGCTTGGCTGATATGGAAGCTGCCCTTTGTCTCTGCACTGTCATCAAGAACAATGTGCTAGGGCTTGTCAACTTGGAAGTGCCAGTTGCATTGAGTTTGCTTGTTAGTGCTTGCCAAAAATCAGTGCCCCCTGGTTTCAAATGTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hydrophob_seed

Protein Analysis

130

Amino Acids

13.56

Weight (kDa)

6.68

Isoelectric Point (pI)

56.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007578)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g28920
malus_domestica	MD15G1126700.v1.1
prunus_persica	Prupe.1G482500_v2.0.a1
pyrus_communis	pycom15g11430
rosa_chinensis	RchiOBHm_Chr6g0297661 RchiOBHm_Chr6g0297721 RchiOBHm_Chr6g0297741
rosa_laevigata	RLG00000011567 RLG00000011572
rosa_multiflora	Rmu_co8194776.1_g000001 Rmu_sc0007683.1_g000005 Rmu_sc0007847.1_g000004
rosa_roxburghii	Rroxscaffold_7G00170240 Rroxscaffold_7G00170260 Rroxscaffold_7G00179090
rosa_rugosa	Rorug06G0274800 Rorug06G0275100
rosa_samantha	Rh6AG385400 Rh6AG385600 Rh6BG394100 Rh6CG399900 Rh6DG386300
rosa_wichuraiana	Rw6G033580 Rw6G033610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	95
Acc36I	ACCTGC	1 cut(s)	95
AciI	CCGC	1 cut(s)	111
AclWI	GGATC	1 cut(s)	180
AgsI	TTSAA	4 cut(s)	45, 154, 239, 379
AjnI	CCWGG	1 cut(s)	370
AluBI	AGCT	2 cut(s)	19, 260
AluI	AGCT	2 cut(s)	19, 260
Alw26I	GTCTC	1 cut(s)	275
AlwI	GGATC	1 cut(s)	180
ApeKI	GCWGC	2 cut(s)	16, 260
AspS9I	GGNCC	1 cut(s)	204
AsuHPI	GGTGA	1 cut(s)	89
AvaII	GGWCC	1 cut(s)	204
BaeGI	GKGCMC	1 cut(s)	369
BbvI	GCAGC	2 cut(s)	28, 247
BciT130I	CCWGG	1 cut(s)	372
BcoDI	GTCTC	1 cut(s)	275
BfaI	CTAG	2 cut(s)	179, 299
BfuAI	ACCTGC	1 cut(s)	95
BisI	GCNGC	2 cut(s)	17, 261
BlsI	GCNGC	2 cut(s)	18, 262
Bme1390I	CCNGG	1 cut(s)	372
Bme18I	GGWCC	1 cut(s)	204
BmgT120I	GGNCC	1 cut(s)	204
BmiI	GGNNCC	2 cut(s)	205, 206
BmrFI	CCNGG	1 cut(s)	372
BsaJI	CCNNGG	1 cut(s)	370
Bse1I	ACTGG	2 cut(s)	197, 323
Bse3DI	GCAATG	1 cut(s)	230
BseBI	CCWGG	1 cut(s)	372
BseDI	CCNNGG	1 cut(s)	370
BseMI	GCAATG	1 cut(s)	230
BseNI	ACTGG	2 cut(s)	197, 323
BseSI	GKGCMC	1 cut(s)	369
BseXI	GCAGC	2 cut(s)	28, 247
BsgI	GTGCAG	1 cut(s)	259
BslFI	GGGAC	1 cut(s)	217
BsmAI	GTCTC	1 cut(s)	275
BsmFI	GGGAC	1 cut(s)	217
Bsp1286I	GDGCHC	1 cut(s)	369
Bsp143I	GATC	1 cut(s)	172
BspACI	CCGC	1 cut(s)	111
BspLI	GGNNCC	2 cut(s)	205, 206
BspMI	ACCTGC	1 cut(s)	95
BspPI	GGATC	1 cut(s)	180
BsrDI	GCAATG	1 cut(s)	230
BsrI	ACTGG	2 cut(s)	197, 323
BssECI	CCNNGG	1 cut(s)	370
BssMI	GATC	1 cut(s)	172
Bst2UI	CCWGG	1 cut(s)	372
Bst4CI	ACNGT	1 cut(s)	280
BstC8I	GCNNGC	3 cut(s)	79, 92, 352
BstKTI	GATC	1 cut(s)	175
BstMAI	GTCTC	1 cut(s)	275
BstMBI	GATC	1 cut(s)	172
BstMWI	GCNNNNNNNGC	1 cut(s)	87
BstNI	CCWGG	1 cut(s)	372
BstSCI	CCNGG	1 cut(s)	370
BstSLI	GKGCMC	1 cut(s)	369
BstV1I	GCAGC	2 cut(s)	28, 247
BstX2I	RGATCY	1 cut(s)	172
BstYI	RGATCY	1 cut(s)	172
BtsIMutI	CAGTG	2 cut(s)	276, 369
BveI	ACCTGC	1 cut(s)	95
Cac8I	GCNNGC	3 cut(s)	79, 92, 352
Cfr13I	GGNCC	1 cut(s)	204
CviAII	CATG	1 cut(s)	103
CviJI	RGCY	7 cut(s)	5, 19, 94, 243, 248, 260, 304
CviKI_1	RGCY	7 cut(s)	5, 19, 94, 243, 248, 260, 304
DpnI	GATC	1 cut(s)	174
DpnII	GATC	1 cut(s)	172
Eco47I	GGWCC	1 cut(s)	204
EcoO109I	RGGNCCY	1 cut(s)	204
EcoRII	CCWGG	1 cut(s)	370
FaeI	CATG	1 cut(s)	106
FaiI	YATR	3 cut(s)	104, 170, 254
FalI	AAGNNNNNCTT	2 cut(s)	249, 281
FaqI	GGGAC	1 cut(s)	217
FatI	CATG	1 cut(s)	102
FauI	CCCGC	1 cut(s)	118
Fnu4HI	GCNGC	2 cut(s)	17, 261
Fsp4HI	GCNGC	2 cut(s)	17, 261
FspBI	CTAG	2 cut(s)	179, 299
GluI	GCNGC	2 cut(s)	17, 261
Hin1II	CATG	1 cut(s)	106
HincII	GTYRAC	2 cut(s)	190, 310
HindII	GTYRAC	2 cut(s)	190, 310
HpaI	GTTAAC	1 cut(s)	190
HphI	GGTGA	1 cut(s)	89
Hpy166II	GTNNAC	2 cut(s)	190, 310
Hpy188III	TCNNGA	1 cut(s)	286
Hpy8I	GTNNAC	2 cut(s)	190, 310
HpyAV	CCTTC	2 cut(s)	203, 233
HpyCH4III	ACNGT	1 cut(s)	280
HpyCH4V	TGCA	5 cut(s)	26, 90, 230, 276, 329
HpyF10VI	GCNNNNNNNGC	1 cut(s)	87
Hsp92II	CATG	1 cut(s)	106
KflI	GGGWCCC	1 cut(s)	204
KspAI	GTTAAC	1 cut(s)	190
Kzo9I	GATC	1 cut(s)	172
LpnPI	CCDG	7 cut(s)	100, 129, 141, 210, 336, 357, 384
Lsp1109I	GCAGC	2 cut(s)	28, 247
MaeI	CTAG	2 cut(s)	179, 299
MalI	GATC	1 cut(s)	174
MboI	GATC	1 cut(s)	172
MboII	GAAGA	1 cut(s)	167
MflI	RGATCY	1 cut(s)	172
MhlI	GDGCHC	1 cut(s)	369
MmeI	TCCRAC	1 cut(s)	33
MnlI	CCTC	3 cut(s)	105, 117, 219
MseI	TTAA	1 cut(s)	189
MspR9I	CCNGG	1 cut(s)	372
MvaI	CCWGG	1 cut(s)	372
MwoI	GCNNNNNNNGC	1 cut(s)	87
NdeII	GATC	1 cut(s)	172
NlaIII	CATG	1 cut(s)	106
NlaIV	GGNNCC	2 cut(s)	205, 206
PaqCI	CACCTGC	1 cut(s)	95
PkrI	GCNGC	2 cut(s)	18, 262
PpuMI	RGGWCCY	1 cut(s)	204
Psp5II	RGGWCCY	1 cut(s)	204
Psp6I	CCWGG	1 cut(s)	370
PspGI	CCWGG	1 cut(s)	370
PspN4I	GGNNCC	2 cut(s)	205, 206
PspPI	GGNCC	1 cut(s)	204
PspPPI	RGGWCCY	1 cut(s)	204
PsuI	RGATCY	1 cut(s)	172
SaqAI	TTAA	1 cut(s)	189
SatI	GCNGC	2 cut(s)	17, 261
Sau3AI	GATC	1 cut(s)	172
Sau96I	GGNCC	1 cut(s)	204
ScrFI	CCNGG	1 cut(s)	372
SduI	GDGCHC	1 cut(s)	369
SetI	ASST	5 cut(s)	21, 89, 130, 195, 262
SinI	GGWCC	1 cut(s)	204
SsiI	CCGC	1 cut(s)	111
SspMI	CTAG	2 cut(s)	179, 299
StyD4I	CCNGG	1 cut(s)	370
TaaI	ACNGT	1 cut(s)	280
Tru1I	TTAA	1 cut(s)	189
Tru9I	TTAA	1 cut(s)	189
TscAI	CASTG	2 cut(s)	283, 369
TseI	GCWGC	2 cut(s)	16, 260
TspRI	CASTG	2 cut(s)	283, 369
VpaK11BI	GGWCC	1 cut(s)	204
XspI	CTAG	2 cut(s)	179, 299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.