Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007578

Physical Location & Seq

Genomic Coordinates Forward (+)

59337499 .. 59338053

Gene Structure 555 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26717

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGCTTCTTCTACCAATCTCTCTGCAACCCTTCTCGTCTTCTCAGTCCTTCTCTACTCTTCAACATTCTCCAGTGCTTGCGGCACATGCAACCCTGCACCTAAAACCCCAAAACCACCAAAACCGGCACCAACACCAATAACACCGGTACCAACAACACCAGCACCAGCTATGGAAACTTGCCCGAGAGACACGTTGAAGTTAGGGGTTTGTGCAGACCTTCTGGGACTCGTGAACGTTCAAATTGGATCGCCAGTAACCAGTCCCTGCTGTGCACTGCTTGAAGGCTTGGCTGATTTGGAGGCTGCTCTTTGTCTTTGCATCGCGCTTAAGGCCAATGTGCTTGGTATTAACTTGGACGTGCCAATTGCTTTGAATTTGCTTGTTAGTGCTTGCCAGAAAACTGTCCCTCCTGGTTTTAAATGCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hydrophob_seed

Protein Analysis

143

Amino Acids

14.59

Weight (kDa)

8.04

Isoelectric Point (pI)

38.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	53 - 142	4.8e-07	Probable lipid transfer
Hydrophob_seed	PF14547	60 - 142	8.1e-27	Hydrophobic seed protein
Tryp_alpha_amyl	PF00234	61 - 142	4.6e-14	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007578)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g28920
malus_domestica	MD15G1126700.v1.1
prunus_persica	Prupe.1G482500_v2.0.a1
pyrus_communis	pycom15g11430
rosa_chinensis	RchiOBHm_Chr6g0297661 RchiOBHm_Chr6g0297721 RchiOBHm_Chr6g0297741
rosa_laevigata	RLG00000011567 RLG00000011572
rosa_multiflora	Rmu_co8194776.1_g000001 Rmu_sc0007683.1_g000005 Rmu_sc0007847.1_g000004
rosa_roxburghii	Rroxscaffold_7G00170240 Rroxscaffold_7G00170260 Rroxscaffold_7G00179090
rosa_rugosa	Rorug06G0274800 Rorug06G0275100
rosa_samantha	Rh6AG385400 Rh6AG385600 Rh6BG394100 Rh6CG399900 Rh6DG386300
rosa_wichuraiana	Rw6G033580 Rw6G033610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	148
AccB1I	GGYRCC	2 cut(s)	127, 148
AccII	CGCG	1 cut(s)	326
AciI	CCGC	1 cut(s)	81
AclI	AACGTT	1 cut(s)	237
AclWI	GGATC	1 cut(s)	256
AcsI	RAATTY	1 cut(s)	376
AfaI	GTAC	1 cut(s)	150
AflII	CTTAAG	1 cut(s)	329
AflIII	ACRYGT	1 cut(s)	192
AgeI	ACCGGT	1 cut(s)	145
AgsI	TTSAA	5 cut(s)	63, 199, 242, 284, 376
AjiI	CACGTC	1 cut(s)	361
AjnI	CCWGG	1 cut(s)	412
AluBI	AGCT	1 cut(s)	170
AluI	AGCT	1 cut(s)	170
Alw21I	GWGCWC	1 cut(s)	277
Alw26I	GTCTC	1 cut(s)	183
Alw44I	GTGCAC	1 cut(s)	273
AlwI	GGATC	1 cut(s)	256
AlwNI	CAGNNNCTG	1 cut(s)	267
Ama87I	CYCGRG	1 cut(s)	184
AoxI	GGCC	1 cut(s)	333
ApaLI	GTGCAC	1 cut(s)	273
ApeKI	GCWGC	1 cut(s)	305
ApoI	RAATTY	1 cut(s)	376
AsiGI	ACCGGT	1 cut(s)	145
Asp718I	GGTACC	1 cut(s)	148
AspLEI	GCGC	1 cut(s)	328
AvaI	CYCGRG	1 cut(s)	184
BaeGI	GKGCMC	1 cut(s)	277
BaeI	ACNNNNGTAYC	2 cut(s)	132, 165
BanI	GGYRCC	2 cut(s)	127, 148
BauI	CACGAG	1 cut(s)	230
BbsI	GAAGAC	1 cut(s)	31
Bbv12I	GWGCWC	1 cut(s)	277
BbvI	GCAGC	1 cut(s)	292
BciT130I	CCWGG	1 cut(s)	414
BcoDI	GTCTC	1 cut(s)	183
BfrI	CTTAAG	1 cut(s)	329
BisI	GCNGC	2 cut(s)	82, 306
BlsI	GCNGC	2 cut(s)	83, 307
Bme1390I	CCNGG	1 cut(s)	414
BmeT110I	CYCGRG	1 cut(s)	184
BmgBI	CACGTC	1 cut(s)	361
BmiI	GGNNCC	2 cut(s)	129, 150
BmrFI	CCNGG	1 cut(s)	414
BmsI	GCATC	1 cut(s)	330
BpiI	GAAGAC	1 cut(s)	31
BpmI	CTGGAG	1 cut(s)	55
BsaWI	WCCGGW	1 cut(s)	145
BsaXI	ACNNNNNCTCC	2 cut(s)	394, 424
Bse118I	RCCGGY	2 cut(s)	124, 145
Bse1I	ACTGG	3 cut(s)	72, 254, 261
BseBI	CCWGG	1 cut(s)	414
BseMII	CTCAG	1 cut(s)	57
BseNI	ACTGG	3 cut(s)	72, 254, 261
BseSI	GKGCMC	1 cut(s)	277
BseXI	GCAGC	1 cut(s)	292
BsgI	GTGCAG	2 cut(s)	81, 234
Bsh1236I	CGCG	1 cut(s)	326
BshFI	GGCC	1 cut(s)	335
BshNI	GGYRCC	2 cut(s)	127, 148
BshTI	ACCGGT	1 cut(s)	145
BsiHKAI	GWGCWC	1 cut(s)	277
BsiHKCI	CYCGRG	1 cut(s)	184
BsiSI	CCGG	2 cut(s)	125, 146
BslFI	GGGAC	3 cut(s)	240, 249, 392
BsmAI	GTCTC	1 cut(s)	183
BsmFI	GGGAC	3 cut(s)	240, 249, 392
BsnI	GGCC	1 cut(s)	335
BsoBI	CYCGRG	1 cut(s)	184
Bsp1286I	GDGCHC	1 cut(s)	277
Bsp143I	GATC	1 cut(s)	248
BspACI	CCGC	1 cut(s)	81
BspANI	GGCC	1 cut(s)	335
BspCNI	CTCAG	1 cut(s)	56
BspFNI	CGCG	1 cut(s)	326
BspLI	GGNNCC	2 cut(s)	129, 150
BspPI	GGATC	1 cut(s)	256
BspT107I	GGYRCC	2 cut(s)	127, 148
BspTI	CTTAAG	1 cut(s)	329
BsrFI	RCCGGY	2 cut(s)	124, 145
BsrI	ACTGG	3 cut(s)	72, 254, 261
BssAI	RCCGGY	2 cut(s)	124, 145
BssMI	GATC	1 cut(s)	248
BssSI	CACGAG	1 cut(s)	230
Bst2BI	CACGAG	1 cut(s)	230
Bst2UI	CCWGG	1 cut(s)	414
Bst4CI	ACNGT	1 cut(s)	406
Bst6I	CTCTTC	1 cut(s)	64
BstAFI	CTTAAG	1 cut(s)	329
BstC8I	GCNNGC	2 cut(s)	79, 394
BstDEI	CTNAG	1 cut(s)	43
BstFNI	CGCG	1 cut(s)	326
BstHHI	GCGC	1 cut(s)	328
BstKTI	GATC	1 cut(s)	251
BstMAI	GTCTC	1 cut(s)	183
BstMBI	GATC	1 cut(s)	248
BstMWI	GCNNNNNNNGC	2 cut(s)	87, 332
BstNI	CCWGG	1 cut(s)	414
BstNSI	RCATGY	1 cut(s)	90
BstSCI	CCNGG	1 cut(s)	412
BstSLI	GKGCMC	1 cut(s)	277
BstUI	CGCG	1 cut(s)	326
BstV1I	GCAGC	1 cut(s)	292
BstV2I	GAAGAC	1 cut(s)	31
BsuRI	GGCC	1 cut(s)	335
BtgZI	GCGATG	1 cut(s)	307
BtrI	CACGTC	1 cut(s)	361
BtsI	GCAGTG	1 cut(s)	275
BtsIMutI	CAGTG	2 cut(s)	79, 275
Cac8I	GCNNGC	2 cut(s)	79, 394
CaiI	CAGNNNCTG	1 cut(s)	267
CfoI	GCGC	1 cut(s)	328
Cfr10I	RCCGGY	2 cut(s)	124, 145
Csp6I	GTAC	1 cut(s)	149
CspAI	ACCGGT	1 cut(s)	145
CviAII	CATG	1 cut(s)	87
CviJI	RGCY	6 cut(s)	5, 170, 288, 293, 305, 335
CviKI_1	RGCY	6 cut(s)	5, 170, 288, 293, 305, 335
CviQI	GTAC	1 cut(s)	149
DdeI	CTNAG	1 cut(s)	43
DpnI	GATC	1 cut(s)	250
DpnII	GATC	1 cut(s)	248
DraI	TTTAAA	1 cut(s)	421
Eam1104I	CTCTTC	1 cut(s)	64
EarI	CTCTTC	1 cut(s)	64
Eco88I	CYCGRG	1 cut(s)	184
EcoRII	CCWGG	1 cut(s)	412
FaeI	CATG	1 cut(s)	90
FaiI	YATR	2 cut(s)	88, 173
FaqI	GGGAC	3 cut(s)	240, 249, 392
FatI	CATG	1 cut(s)	86
Fnu4HI	GCNGC	2 cut(s)	82, 306
Fsp4HI	GCNGC	2 cut(s)	82, 306
GlaI	GCGC	1 cut(s)	327
GluI	GCNGC	2 cut(s)	82, 306
GsuI	CTGGAG	1 cut(s)	55
HaeIII	GGCC	1 cut(s)	335
HapII	CCGG	2 cut(s)	125, 146
HhaI	GCGC	1 cut(s)	328
Hin1II	CATG	1 cut(s)	90
Hin6I	GCGC	1 cut(s)	326
HinP1I	GCGC	1 cut(s)	326
HinfI	GANTC	1 cut(s)	228
HpaII	CCGG	2 cut(s)	125, 146
Hpy166II	GTNNAC	2 cut(s)	235, 275
Hpy188III	TCNNGA	1 cut(s)	232
Hpy8I	GTNNAC	2 cut(s)	235, 275
HpyAV	CCTTC	4 cut(s)	41, 59, 230, 278
HpyCH4III	ACNGT	1 cut(s)	406
HpyCH4IV	ACGT	3 cut(s)	194, 237, 360
HpyCH4V	TGCA	7 cut(s)	26, 90, 98, 215, 275, 321, 426
HpyF10VI	GCNNNNNNNGC	2 cut(s)	87, 332
HpyF3I	CTNAG	1 cut(s)	43
HpySE526I	ACGT	3 cut(s)	194, 237, 360
Hsp92II	CATG	1 cut(s)	90
HspAI	GCGC	1 cut(s)	326
KpnI	GGTACC	1 cut(s)	152
Kzo9I	GATC	1 cut(s)	248
Lsp1109I	GCAGC	1 cut(s)	292
LweI	GCATC	1 cut(s)	330
MaeII	ACGT	3 cut(s)	194, 237, 360
MaeIII	GTNAC	1 cut(s)	256
MalI	GATC	1 cut(s)	250
MboI	GATC	1 cut(s)	248
MboII	GAAGA	2 cut(s)	31, 51
MfeI	CAATTG	1 cut(s)	366
MhlI	GDGCHC	1 cut(s)	277
MluCI	AATT	3 cut(s)	243, 366, 376
MlyI	GAGTC	1 cut(s)	222
MnlI	CCTC	2 cut(s)	295, 420
MseI	TTAA	3 cut(s)	330, 351, 420
MspCI	CTTAAG	1 cut(s)	329
MspI	CCGG	2 cut(s)	125, 146
MspR9I	CCNGG	1 cut(s)	414
MunI	CAATTG	1 cut(s)	366
MvaI	CCWGG	1 cut(s)	414
MvnI	CGCG	1 cut(s)	326
MwoI	GCNNNNNNNGC	2 cut(s)	87, 332
NdeII	GATC	1 cut(s)	248
NlaIII	CATG	1 cut(s)	90
NlaIV	GGNNCC	2 cut(s)	129, 150
NspI	RCATGY	1 cut(s)	90
PinAI	ACCGGT	1 cut(s)	145
PkrI	GCNGC	2 cut(s)	83, 307
PleI	GAGTC	1 cut(s)	222
PpsI	GAGTC	1 cut(s)	222
Psp1406I	AACGTT	1 cut(s)	237
Psp6I	CCWGG	1 cut(s)	412
PspGI	CCWGG	1 cut(s)	412
PspN4I	GGNNCC	2 cut(s)	129, 150
PstNI	CAGNNNCTG	1 cut(s)	267
RsaI	GTAC	1 cut(s)	150
RsaNI	GTAC	1 cut(s)	149
SaqAI	TTAA	3 cut(s)	330, 351, 420
SatI	GCNGC	2 cut(s)	82, 306
Sau3AI	GATC	1 cut(s)	248
SchI	GAGTC	1 cut(s)	222
ScrFI	CCNGG	1 cut(s)	414
SduI	GDGCHC	1 cut(s)	277
SetI	ASST	6 cut(s)	103, 172, 197, 222, 240, 363
SfaNI	GCATC	1 cut(s)	330
SmlI	CTYRAG	1 cut(s)	329
SmoI	CTYRAG	1 cut(s)	329
Sse9I	AATT	3 cut(s)	243, 366, 376
SsiI	CCGC	1 cut(s)	81
StyD4I	CCNGG	1 cut(s)	412
TaaI	ACNGT	1 cut(s)	406
TaiI	ACGT	3 cut(s)	197, 240, 363
TasI	AATT	3 cut(s)	243, 366, 376
TauI	GCSGC	1 cut(s)	84
Tru1I	TTAA	3 cut(s)	330, 351, 420
Tru9I	TTAA	3 cut(s)	330, 351, 420
TscAI	CASTG	2 cut(s)	79, 282
TseI	GCWGC	1 cut(s)	305
TspRI	CASTG	2 cut(s)	79, 282
Vha464I	CTTAAG	1 cut(s)	329
VneI	GTGCAC	1 cut(s)	273
XapI	RAATTY	1 cut(s)	376
XceI	RCATGY	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.