Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0007578

Physical Location & Seq

Genomic Coordinates Reverse (-)

10709747 .. 10710721

Gene Structure 975 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00170260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGCTTCTTCTACCAATCTCTCTGCAACCCTTCTCGTCTTGTCAGTCCTTCTCTACTCTTCAACATTCTCCAGTGCTTGCCGCACATGCCACCCTGCACCTGAAAACACAAAACCACTACCAAAACCACCAATACCGGCACCAACACCAATAACACCGGTACCAACAACACCAGCACCAGCTATGGAAACTTGCCCGAGAGACACGTTGAAGTTAGGGGTTTGTGCAGACCTTCTGGGACTCGTGAACGTTCAAATTGGATCGCCAGCAACCAGTCCCTGCTGTGCACTGCTTGAAGGCTTGGTGGATTCGGAGGCTGCTCTTTGTCTTTGCACCGCGCTTAAGGCCAATGTGCTTGGTATTAACTTGGACGTGCCAATTGCTTTGAATTTGCTTGTTAGTGCTTGCCAGAAAACTGTCCCTCCTGGTTTTAAATGCGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hydrophob_seed

Protein Analysis

147

Amino Acids

15.08

Weight (kDa)

5.74

Isoelectric Point (pI)

47.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	57 - 146	1.7e-08	Probable lipid transfer
Hydrophob_seed	PF14547	64 - 146	1e-27	Hydrophobic seed protein
Tryp_alpha_amyl	PF00234	65 - 146	4.3e-14	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007578)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g28920
malus_domestica	MD15G1126700.v1.1
prunus_persica	Prupe.1G482500_v2.0.a1
pyrus_communis	pycom15g11430
rosa_chinensis	RchiOBHm_Chr6g0297661 RchiOBHm_Chr6g0297721 RchiOBHm_Chr6g0297741
rosa_laevigata	RLG00000011567 RLG00000011572
rosa_multiflora	Rmu_co8194776.1_g000001 Rmu_sc0007683.1_g000005 Rmu_sc0007847.1_g000004
rosa_roxburghii	Rroxscaffold_7G00170240 Rroxscaffold_7G00170260 Rroxscaffold_7G00179090
rosa_rugosa	Rorug06G0274800 Rorug06G0275100
rosa_samantha	Rh6AG385400 Rh6AG385600 Rh6BG394100 Rh6CG399900 Rh6DG386300
rosa_wichuraiana	Rw6G033580 Rw6G033610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	160
AccB1I	GGYRCC	2 cut(s)	139, 160
AccII	CGCG	1 cut(s)	338
AciI	CCGC	2 cut(s)	82, 336
AclI	AACGTT	1 cut(s)	249
AclWI	GGATC	1 cut(s)	268
AcsI	RAATTY	1 cut(s)	388
AfaI	GTAC	1 cut(s)	162
AflII	CTTAAG	1 cut(s)	341
AflIII	ACRYGT	1 cut(s)	204
AgeI	ACCGGT	1 cut(s)	157
AgsI	TTSAA	5 cut(s)	63, 211, 254, 296, 388
AjiI	CACGTC	1 cut(s)	373
AjnI	CCWGG	1 cut(s)	424
AluBI	AGCT	1 cut(s)	182
AluI	AGCT	1 cut(s)	182
Alw21I	GWGCWC	1 cut(s)	289
Alw26I	GTCTC	1 cut(s)	195
Alw44I	GTGCAC	1 cut(s)	285
AlwI	GGATC	1 cut(s)	268
AlwNI	CAGNNNCTG	1 cut(s)	279
Ama87I	CYCGRG	1 cut(s)	196
AoxI	GGCC	1 cut(s)	345
ApaLI	GTGCAC	1 cut(s)	285
ApeKI	GCWGC	1 cut(s)	317
ApoI	RAATTY	1 cut(s)	388
AsiGI	ACCGGT	1 cut(s)	157
Asp718I	GGTACC	1 cut(s)	160
AspLEI	GCGC	1 cut(s)	340
AvaI	CYCGRG	1 cut(s)	196
BaeGI	GKGCMC	1 cut(s)	289
BaeI	ACNNNNGTAYC	2 cut(s)	144, 177
BanI	GGYRCC	2 cut(s)	139, 160
BauI	CACGAG	1 cut(s)	242
Bbv12I	GWGCWC	1 cut(s)	289
BbvI	GCAGC	1 cut(s)	304
BciT130I	CCWGG	1 cut(s)	426
BcoDI	GTCTC	1 cut(s)	195
BfrI	CTTAAG	1 cut(s)	341
BisI	GCNGC	2 cut(s)	82, 318
BlsI	GCNGC	2 cut(s)	83, 319
Bme1390I	CCNGG	1 cut(s)	426
BmeT110I	CYCGRG	1 cut(s)	196
BmgBI	CACGTC	1 cut(s)	373
BmiI	GGNNCC	2 cut(s)	141, 162
BmrFI	CCNGG	1 cut(s)	426
BpmI	CTGGAG	1 cut(s)	55
BsaWI	WCCGGW	1 cut(s)	157
BsaXI	ACNNNNNCTCC	2 cut(s)	406, 436
Bse118I	RCCGGY	2 cut(s)	136, 157
Bse1I	ACTGG	2 cut(s)	72, 273
BseBI	CCWGG	1 cut(s)	426
BseNI	ACTGG	2 cut(s)	72, 273
BseSI	GKGCMC	1 cut(s)	289
BseXI	GCAGC	1 cut(s)	304
BsgI	GTGCAG	2 cut(s)	81, 246
Bsh1236I	CGCG	1 cut(s)	338
BshFI	GGCC	1 cut(s)	347
BshNI	GGYRCC	2 cut(s)	139, 160
BshTI	ACCGGT	1 cut(s)	157
BsiHKAI	GWGCWC	1 cut(s)	289
BsiHKCI	CYCGRG	1 cut(s)	196
BsiSI	CCGG	2 cut(s)	137, 158
BslFI	GGGAC	3 cut(s)	252, 261, 404
BsmAI	GTCTC	1 cut(s)	195
BsmFI	GGGAC	3 cut(s)	252, 261, 404
BsnI	GGCC	1 cut(s)	347
BsoBI	CYCGRG	1 cut(s)	196
Bsp1286I	GDGCHC	1 cut(s)	289
Bsp143I	GATC	1 cut(s)	260
BspACI	CCGC	2 cut(s)	82, 336
BspANI	GGCC	1 cut(s)	347
BspFNI	CGCG	1 cut(s)	338
BspLI	GGNNCC	2 cut(s)	141, 162
BspPI	GGATC	1 cut(s)	268
BspT107I	GGYRCC	2 cut(s)	139, 160
BspTI	CTTAAG	1 cut(s)	341
BsrFI	RCCGGY	2 cut(s)	136, 157
BsrI	ACTGG	2 cut(s)	72, 273
BssAI	RCCGGY	2 cut(s)	136, 157
BssMI	GATC	1 cut(s)	260
BssSI	CACGAG	1 cut(s)	242
Bst2BI	CACGAG	1 cut(s)	242
Bst2UI	CCWGG	1 cut(s)	426
Bst4CI	ACNGT	1 cut(s)	418
Bst6I	CTCTTC	1 cut(s)	64
BstAFI	CTTAAG	1 cut(s)	341
BstC8I	GCNNGC	3 cut(s)	79, 267, 406
BstFNI	CGCG	1 cut(s)	338
BstHHI	GCGC	1 cut(s)	340
BstKTI	GATC	1 cut(s)	263
BstMAI	GTCTC	1 cut(s)	195
BstMBI	GATC	1 cut(s)	260
BstMWI	GCNNNNNNNGC	2 cut(s)	87, 344
BstNI	CCWGG	1 cut(s)	426
BstNSI	RCATGY	1 cut(s)	90
BstSCI	CCNGG	1 cut(s)	424
BstSLI	GKGCMC	1 cut(s)	289
BstUI	CGCG	1 cut(s)	338
BstV1I	GCAGC	1 cut(s)	304
BsuRI	GGCC	1 cut(s)	347
BtrI	CACGTC	1 cut(s)	373
BtsI	GCAGTG	1 cut(s)	287
BtsIMutI	CAGTG	2 cut(s)	79, 287
Cac8I	GCNNGC	3 cut(s)	79, 267, 406
CaiI	CAGNNNCTG	1 cut(s)	279
CfoI	GCGC	1 cut(s)	340
Cfr10I	RCCGGY	2 cut(s)	136, 157
Csp6I	GTAC	1 cut(s)	161
CspAI	ACCGGT	1 cut(s)	157
CviAII	CATG	1 cut(s)	87
CviJI	RGCY	5 cut(s)	5, 182, 300, 317, 347
CviKI_1	RGCY	5 cut(s)	5, 182, 300, 317, 347
CviQI	GTAC	1 cut(s)	161
DpnI	GATC	1 cut(s)	262
DpnII	GATC	1 cut(s)	260
DraI	TTTAAA	1 cut(s)	433
Eam1104I	CTCTTC	1 cut(s)	64
EarI	CTCTTC	1 cut(s)	64
Eco88I	CYCGRG	1 cut(s)	196
EcoRII	CCWGG	1 cut(s)	424
FaeI	CATG	1 cut(s)	90
FaiI	YATR	2 cut(s)	88, 185
FaqI	GGGAC	3 cut(s)	252, 261, 404
FatI	CATG	1 cut(s)	86
Fnu4HI	GCNGC	2 cut(s)	82, 318
Fsp4HI	GCNGC	2 cut(s)	82, 318
GlaI	GCGC	1 cut(s)	339
GluI	GCNGC	2 cut(s)	82, 318
GsuI	CTGGAG	1 cut(s)	55
HaeIII	GGCC	1 cut(s)	347
HapII	CCGG	2 cut(s)	137, 158
HhaI	GCGC	1 cut(s)	340
Hin1II	CATG	1 cut(s)	90
Hin6I	GCGC	1 cut(s)	338
HinP1I	GCGC	1 cut(s)	338
HinfI	GANTC	2 cut(s)	240, 308
HpaII	CCGG	2 cut(s)	137, 158
Hpy166II	GTNNAC	2 cut(s)	247, 287
Hpy188I	TCNGA	1 cut(s)	313
Hpy188III	TCNNGA	1 cut(s)	244
Hpy8I	GTNNAC	2 cut(s)	247, 287
HpyAV	CCTTC	4 cut(s)	41, 59, 242, 290
HpyCH4III	ACNGT	1 cut(s)	418
HpyCH4IV	ACGT	3 cut(s)	206, 249, 372
HpyCH4V	TGCA	5 cut(s)	26, 98, 227, 287, 333
HpyF10VI	GCNNNNNNNGC	2 cut(s)	87, 344
HpySE526I	ACGT	3 cut(s)	206, 249, 372
Hsp92II	CATG	1 cut(s)	90
HspAI	GCGC	1 cut(s)	338
KpnI	GGTACC	1 cut(s)	164
Kzo9I	GATC	1 cut(s)	260
Lsp1109I	GCAGC	1 cut(s)	304
MaeII	ACGT	3 cut(s)	206, 249, 372
MalI	GATC	1 cut(s)	262
MboI	GATC	1 cut(s)	260
MboII	GAAGA	1 cut(s)	51
MfeI	CAATTG	1 cut(s)	378
MhlI	GDGCHC	1 cut(s)	289
MluCI	AATT	3 cut(s)	255, 378, 388
MlyI	GAGTC	1 cut(s)	234
MnlI	CCTC	2 cut(s)	307, 432
MseI	TTAA	3 cut(s)	342, 363, 432
MspCI	CTTAAG	1 cut(s)	341
MspI	CCGG	2 cut(s)	137, 158
MspR9I	CCNGG	1 cut(s)	426
MunI	CAATTG	1 cut(s)	378
MvaI	CCWGG	1 cut(s)	426
MvnI	CGCG	1 cut(s)	338
MwoI	GCNNNNNNNGC	2 cut(s)	87, 344
NdeII	GATC	1 cut(s)	260
NlaIII	CATG	1 cut(s)	90
NlaIV	GGNNCC	2 cut(s)	141, 162
NspI	RCATGY	1 cut(s)	90
PfeI	GAWTC	1 cut(s)	308
PinAI	ACCGGT	1 cut(s)	157
PkrI	GCNGC	2 cut(s)	83, 319
PleI	GAGTC	1 cut(s)	234
PpsI	GAGTC	1 cut(s)	234
Psp1406I	AACGTT	1 cut(s)	249
Psp6I	CCWGG	1 cut(s)	424
PspGI	CCWGG	1 cut(s)	424
PspN4I	GGNNCC	2 cut(s)	141, 162
PstNI	CAGNNNCTG	1 cut(s)	279
RsaI	GTAC	1 cut(s)	162
RsaNI	GTAC	1 cut(s)	161
SaqAI	TTAA	3 cut(s)	342, 363, 432
SatI	GCNGC	2 cut(s)	82, 318
Sau3AI	GATC	1 cut(s)	260
SchI	GAGTC	1 cut(s)	234
ScrFI	CCNGG	1 cut(s)	426
SduI	GDGCHC	1 cut(s)	289
SetI	ASST	6 cut(s)	103, 184, 209, 234, 252, 375
SmlI	CTYRAG	1 cut(s)	341
SmoI	CTYRAG	1 cut(s)	341
Sse9I	AATT	3 cut(s)	255, 378, 388
SsiI	CCGC	2 cut(s)	82, 336
StyD4I	CCNGG	1 cut(s)	424
TaaI	ACNGT	1 cut(s)	418
TaiI	ACGT	3 cut(s)	209, 252, 375
TasI	AATT	3 cut(s)	255, 378, 388
TauI	GCSGC	1 cut(s)	84
TfiI	GAWTC	1 cut(s)	308
Tru1I	TTAA	3 cut(s)	342, 363, 432
Tru9I	TTAA	3 cut(s)	342, 363, 432
TscAI	CASTG	2 cut(s)	79, 294
TseI	GCWGC	1 cut(s)	317
TspRI	CASTG	2 cut(s)	79, 294
Vha464I	CTTAAG	1 cut(s)	341
VneI	GTGCAC	1 cut(s)	285
XapI	RAATTY	1 cut(s)	388
XceI	RCATGY	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.