Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0007578

Physical Location & Seq

Genomic Coordinates Forward (+)

58478423 .. 58480350

Gene Structure 1928 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG385400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGCTTCTTCTACCAATCTCTCTGCAACCCTTCTCGTCTTCTCAGTCCTTCTCTACTCTTCAACATTCTCCAGTGCTTGCGGCACATGCAACCCTGCACCTAAAACCCCAAAACCGGCTCCAACACCAATAACACCGGTACCAACAACACCAGCACCAGCACCAGCTATGGAAACTTGCCCGAGAGACACGTTGAAGTTAGGGGTTTGTGCAGACCTTCTGGGACTCGTGAACGCTCAAATTGGATCGCCAGTAACCAGTCCCTGCTGTGCACTGCTTGAAGGCTTGGCTGATTTGGAGGCTGCTCTTTGTCTTTGCACCGCGCTTAAGGCCAATGTGCTTGGTATTAACTTGGACGTGCCAATTGCTTTGAATTTGCTTGTTAGTGCTTGCCAGAAAACTGTCCCTCCTGGTTTTAAATGCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hydrophob_seed

Protein Analysis

142

Amino Acids

14.39

Weight (kDa)

7.42

Isoelectric Point (pI)

43.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	50 - 141	2.9e-08	Probable lipid transfer
Hydrophob_seed	PF14547	59 - 141	2.4e-27	Hydrophobic seed protein
Tryp_alpha_amyl	PF00234	60 - 141	1.9e-14	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007578)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g28920
malus_domestica	MD15G1126700.v1.1
prunus_persica	Prupe.1G482500_v2.0.a1
pyrus_communis	pycom15g11430
rosa_chinensis	RchiOBHm_Chr6g0297661 RchiOBHm_Chr6g0297721 RchiOBHm_Chr6g0297741
rosa_laevigata	RLG00000011567 RLG00000011572
rosa_multiflora	Rmu_co8194776.1_g000001 Rmu_sc0007683.1_g000005 Rmu_sc0007847.1_g000004
rosa_roxburghii	Rroxscaffold_7G00170240 Rroxscaffold_7G00170260 Rroxscaffold_7G00179090
rosa_rugosa	Rorug06G0274800 Rorug06G0275100
rosa_samantha	Rh6AG385400 Rh6AG385600 Rh6BG394100 Rh6CG399900 Rh6DG386300
rosa_wichuraiana	Rw6G033580 Rw6G033610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	139
AccB1I	GGYRCC	1 cut(s)	139
AccII	CGCG	1 cut(s)	323
AciI	CCGC	2 cut(s)	81, 321
AclWI	GGATC	1 cut(s)	253
AcsI	RAATTY	1 cut(s)	373
AfaI	GTAC	1 cut(s)	141
AfiI	CCNNNNNNNGG	1 cut(s)	115
AflII	CTTAAG	1 cut(s)	326
AflIII	ACRYGT	1 cut(s)	189
AgeI	ACCGGT	1 cut(s)	136
AgsI	TTSAA	4 cut(s)	63, 196, 281, 373
AjiI	CACGTC	1 cut(s)	358
AjnI	CCWGG	1 cut(s)	409
AluBI	AGCT	1 cut(s)	167
AluI	AGCT	1 cut(s)	167
Alw21I	GWGCWC	1 cut(s)	274
Alw26I	GTCTC	1 cut(s)	180
Alw44I	GTGCAC	1 cut(s)	270
AlwI	GGATC	1 cut(s)	253
AlwNI	CAGNNNCTG	1 cut(s)	264
Ama87I	CYCGRG	1 cut(s)	181
AoxI	GGCC	1 cut(s)	330
ApaLI	GTGCAC	1 cut(s)	270
ApeKI	GCWGC	1 cut(s)	302
ApoI	RAATTY	1 cut(s)	373
AsiGI	ACCGGT	1 cut(s)	136
Asp718I	GGTACC	1 cut(s)	139
AspLEI	GCGC	1 cut(s)	325
AvaI	CYCGRG	1 cut(s)	181
BaeGI	GKGCMC	1 cut(s)	274
BaeI	ACNNNNGTAYC	2 cut(s)	123, 156
BanI	GGYRCC	1 cut(s)	139
BauI	CACGAG	1 cut(s)	227
BbsI	GAAGAC	1 cut(s)	31
Bbv12I	GWGCWC	1 cut(s)	274
BbvI	GCAGC	1 cut(s)	289
BciT130I	CCWGG	1 cut(s)	411
BcoDI	GTCTC	1 cut(s)	180
BfrI	CTTAAG	1 cut(s)	326
BisI	GCNGC	2 cut(s)	82, 303
BlsI	GCNGC	2 cut(s)	83, 304
Bme1390I	CCNGG	1 cut(s)	411
BmeT110I	CYCGRG	1 cut(s)	181
BmgBI	CACGTC	1 cut(s)	358
BmiI	GGNNCC	2 cut(s)	120, 141
BmrFI	CCNGG	1 cut(s)	411
BpiI	GAAGAC	1 cut(s)	31
BpmI	CTGGAG	1 cut(s)	55
BsaWI	WCCGGW	1 cut(s)	136
BsaXI	ACNNNNNCTCC	2 cut(s)	391, 421
Bsc4I	CCNNNNNNNGG	1 cut(s)	115
Bse118I	RCCGGY	2 cut(s)	115, 136
Bse1I	ACTGG	3 cut(s)	72, 251, 258
BseBI	CCWGG	1 cut(s)	411
BseLI	CCNNNNNNNGG	1 cut(s)	115
BseMII	CTCAG	1 cut(s)	57
BseNI	ACTGG	3 cut(s)	72, 251, 258
BseSI	GKGCMC	1 cut(s)	274
BseXI	GCAGC	1 cut(s)	289
BsgI	GTGCAG	2 cut(s)	81, 231
Bsh1236I	CGCG	1 cut(s)	323
BshFI	GGCC	1 cut(s)	332
BshNI	GGYRCC	1 cut(s)	139
BshTI	ACCGGT	1 cut(s)	136
BsiHKAI	GWGCWC	1 cut(s)	274
BsiHKCI	CYCGRG	1 cut(s)	181
BsiSI	CCGG	2 cut(s)	116, 137
BslFI	GGGAC	3 cut(s)	237, 246, 389
BslI	CCNNNNNNNGG	1 cut(s)	115
BsmAI	GTCTC	1 cut(s)	180
BsmFI	GGGAC	3 cut(s)	237, 246, 389
BsnI	GGCC	1 cut(s)	332
BsoBI	CYCGRG	1 cut(s)	181
Bsp1286I	GDGCHC	1 cut(s)	274
Bsp143I	GATC	1 cut(s)	245
BspACI	CCGC	2 cut(s)	81, 321
BspANI	GGCC	1 cut(s)	332
BspCNI	CTCAG	1 cut(s)	56
BspFNI	CGCG	1 cut(s)	323
BspLI	GGNNCC	2 cut(s)	120, 141
BspPI	GGATC	1 cut(s)	253
BspT107I	GGYRCC	1 cut(s)	139
BspTI	CTTAAG	1 cut(s)	326
BsrFI	RCCGGY	2 cut(s)	115, 136
BsrI	ACTGG	3 cut(s)	72, 251, 258
BssAI	RCCGGY	2 cut(s)	115, 136
BssMI	GATC	1 cut(s)	245
BssSI	CACGAG	1 cut(s)	227
Bst2BI	CACGAG	1 cut(s)	227
Bst2UI	CCWGG	1 cut(s)	411
Bst4CI	ACNGT	1 cut(s)	403
Bst6I	CTCTTC	1 cut(s)	64
BstAFI	CTTAAG	1 cut(s)	326
BstC8I	GCNNGC	2 cut(s)	79, 391
BstDEI	CTNAG	1 cut(s)	43
BstFNI	CGCG	1 cut(s)	323
BstHHI	GCGC	1 cut(s)	325
BstKTI	GATC	1 cut(s)	248
BstMAI	GTCTC	1 cut(s)	180
BstMBI	GATC	1 cut(s)	245
BstMWI	GCNNNNNNNGC	2 cut(s)	87, 329
BstNI	CCWGG	1 cut(s)	411
BstNSI	RCATGY	1 cut(s)	90
BstSCI	CCNGG	1 cut(s)	409
BstSLI	GKGCMC	1 cut(s)	274
BstUI	CGCG	1 cut(s)	323
BstV1I	GCAGC	1 cut(s)	289
BstV2I	GAAGAC	1 cut(s)	31
BsuRI	GGCC	1 cut(s)	332
BtrI	CACGTC	1 cut(s)	358
BtsI	GCAGTG	1 cut(s)	272
BtsIMutI	CAGTG	2 cut(s)	79, 272
Cac8I	GCNNGC	2 cut(s)	79, 391
CaiI	CAGNNNCTG	1 cut(s)	264
CfoI	GCGC	1 cut(s)	325
Cfr10I	RCCGGY	2 cut(s)	115, 136
Csp6I	GTAC	1 cut(s)	140
CspAI	ACCGGT	1 cut(s)	136
CviAII	CATG	1 cut(s)	87
CviJI	RGCY	7 cut(s)	5, 119, 167, 285, 290, 302, 332
CviKI_1	RGCY	7 cut(s)	5, 119, 167, 285, 290, 302, 332
CviQI	GTAC	1 cut(s)	140
DdeI	CTNAG	1 cut(s)	43
DpnI	GATC	1 cut(s)	247
DpnII	GATC	1 cut(s)	245
DraI	TTTAAA	1 cut(s)	418
Eam1104I	CTCTTC	1 cut(s)	64
EarI	CTCTTC	1 cut(s)	64
Eco88I	CYCGRG	1 cut(s)	181
EcoRII	CCWGG	1 cut(s)	409
FaeI	CATG	1 cut(s)	90
FaiI	YATR	2 cut(s)	88, 170
FaqI	GGGAC	3 cut(s)	237, 246, 389
FatI	CATG	1 cut(s)	86
Fnu4HI	GCNGC	2 cut(s)	82, 303
Fsp4HI	GCNGC	2 cut(s)	82, 303
GlaI	GCGC	1 cut(s)	324
GluI	GCNGC	2 cut(s)	82, 303
GsuI	CTGGAG	1 cut(s)	55
HaeIII	GGCC	1 cut(s)	332
HapII	CCGG	2 cut(s)	116, 137
HhaI	GCGC	1 cut(s)	325
Hin1II	CATG	1 cut(s)	90
Hin6I	GCGC	1 cut(s)	323
HinP1I	GCGC	1 cut(s)	323
HinfI	GANTC	1 cut(s)	225
HpaII	CCGG	2 cut(s)	116, 137
Hpy166II	GTNNAC	2 cut(s)	232, 272
Hpy188III	TCNNGA	1 cut(s)	229
Hpy8I	GTNNAC	2 cut(s)	232, 272
HpyAV	CCTTC	4 cut(s)	41, 59, 227, 275
HpyCH4III	ACNGT	1 cut(s)	403
HpyCH4IV	ACGT	2 cut(s)	191, 357
HpyCH4V	TGCA	7 cut(s)	26, 90, 98, 212, 272, 318, 423
HpyF10VI	GCNNNNNNNGC	2 cut(s)	87, 329
HpyF3I	CTNAG	1 cut(s)	43
HpySE526I	ACGT	2 cut(s)	191, 357
Hsp92II	CATG	1 cut(s)	90
HspAI	GCGC	1 cut(s)	323
KpnI	GGTACC	1 cut(s)	143
Kzo9I	GATC	1 cut(s)	245
LmnI	GCTCC	1 cut(s)	124
Lsp1109I	GCAGC	1 cut(s)	289
MaeII	ACGT	2 cut(s)	191, 357
MaeIII	GTNAC	1 cut(s)	253
MalI	GATC	1 cut(s)	247
MboI	GATC	1 cut(s)	245
MboII	GAAGA	2 cut(s)	31, 51
MfeI	CAATTG	1 cut(s)	363
MhlI	GDGCHC	1 cut(s)	274
MluCI	AATT	3 cut(s)	240, 363, 373
MlyI	GAGTC	1 cut(s)	219
MmeI	TCCRAC	1 cut(s)	146
MnlI	CCTC	2 cut(s)	292, 417
MseI	TTAA	3 cut(s)	327, 348, 417
MspCI	CTTAAG	1 cut(s)	326
MspI	CCGG	2 cut(s)	116, 137
MspR9I	CCNGG	1 cut(s)	411
MunI	CAATTG	1 cut(s)	363
MvaI	CCWGG	1 cut(s)	411
MvnI	CGCG	1 cut(s)	323
MwoI	GCNNNNNNNGC	2 cut(s)	87, 329
NdeII	GATC	1 cut(s)	245
NlaIII	CATG	1 cut(s)	90
NlaIV	GGNNCC	2 cut(s)	120, 141
NspI	RCATGY	1 cut(s)	90
PinAI	ACCGGT	1 cut(s)	136
PkrI	GCNGC	2 cut(s)	83, 304
PleI	GAGTC	1 cut(s)	219
PpsI	GAGTC	1 cut(s)	219
Psp6I	CCWGG	1 cut(s)	409
PspGI	CCWGG	1 cut(s)	409
PspN4I	GGNNCC	2 cut(s)	120, 141
PstNI	CAGNNNCTG	1 cut(s)	264
RsaI	GTAC	1 cut(s)	141
RsaNI	GTAC	1 cut(s)	140
SaqAI	TTAA	3 cut(s)	327, 348, 417
SatI	GCNGC	2 cut(s)	82, 303
Sau3AI	GATC	1 cut(s)	245
SchI	GAGTC	1 cut(s)	219
ScrFI	CCNGG	1 cut(s)	411
SduI	GDGCHC	1 cut(s)	274
SetI	ASST	5 cut(s)	103, 169, 194, 219, 360
SmlI	CTYRAG	1 cut(s)	326
SmoI	CTYRAG	1 cut(s)	326
Sse9I	AATT	3 cut(s)	240, 363, 373
SsiI	CCGC	2 cut(s)	81, 321
StyD4I	CCNGG	1 cut(s)	409
TaaI	ACNGT	1 cut(s)	403
TaiI	ACGT	2 cut(s)	194, 360
TasI	AATT	3 cut(s)	240, 363, 373
TauI	GCSGC	1 cut(s)	84
Tru1I	TTAA	3 cut(s)	327, 348, 417
Tru9I	TTAA	3 cut(s)	327, 348, 417
TscAI	CASTG	2 cut(s)	79, 279
TseI	GCWGC	1 cut(s)	302
TspRI	CASTG	2 cut(s)	79, 279
Vha464I	CTTAAG	1 cut(s)	326
VneI	GTGCAC	1 cut(s)	270
XapI	RAATTY	1 cut(s)	373
XceI	RCATGY	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.