Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0007578

Physical Location & Seq

Genomic Coordinates Reverse (-)

10573811 .. 10574215

Gene Structure 405 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011567

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGCCTCTTCCAACAAGCTCTCTGCAGCTCTTCTCATCTTCTCAGTCCTTCTCTACTCTTCCACATTCTCCAGTGCTTGCGGTACATGCAAGCCTACACCAGTAACACCAGTAGCACCAGTAACACCAGCACCATCTCCAGCTGTCGCAAAGTGCCCAAAGGACACGTTGAAGCTAGGAGTTTGTGCAGACCTTCTGGGGCTTGTGAATCTCCAAATTGGAGCCCCTCCAACCAGTCCTTGCTGTGCATTGCTAGAAGGCCTGGCTGATCTGGAGGCTGCGCTTTGTCTCTGCACTGCTCTCAAGGCCAATGTGCTTGGTATTAATTTGGATGTGCCAATTAGTTTGAGCTTGCTTCTTAGTGCTTGCCAGAAAACTGTACCTTCTGGTTATCAATGCGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hydrophob_seed

Protein Analysis

135

Amino Acids

13.55

Weight (kDa)

6.13

Isoelectric Point (pI)

46.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	41 - 133	4.6e-07	Probable lipid transfer
Hydrophob_seed	PF14547	52 - 133	2.8e-26	Hydrophobic seed protein
Tryp_alpha_amyl	PF00234	52 - 133	2e-14	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007578)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g28920
malus_domestica	MD15G1126700.v1.1
prunus_persica	Prupe.1G482500_v2.0.a1
pyrus_communis	pycom15g11430
rosa_chinensis	RchiOBHm_Chr6g0297661 RchiOBHm_Chr6g0297721 RchiOBHm_Chr6g0297741
rosa_laevigata	RLG00000011567 RLG00000011572
rosa_multiflora	Rmu_co8194776.1_g000001 Rmu_sc0007683.1_g000005 Rmu_sc0007847.1_g000004
rosa_roxburghii	Rroxscaffold_7G00170240 Rroxscaffold_7G00170260 Rroxscaffold_7G00179090
rosa_rugosa	Rorug06G0274800 Rorug06G0275100
rosa_samantha	Rh6AG385400 Rh6AG385600 Rh6BG394100 Rh6CG399900 Rh6DG386300
rosa_wichuraiana	Rw6G033580 Rw6G033610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	81
AfaI	GTAC	2 cut(s)	85, 381
AflIII	ACRYGT	1 cut(s)	165
AgsI	TTSAA	1 cut(s)	172
AjnI	CCWGG	1 cut(s)	261
AluBI	AGCT	5 cut(s)	19, 29, 143, 175, 351
AluI	AGCT	5 cut(s)	19, 29, 143, 175, 351
Alw26I	GTCTC	1 cut(s)	293
AoxI	GGCC	3 cut(s)	3, 259, 306
ApeKI	GCWGC	2 cut(s)	26, 278
AseI	ATTAAT	1 cut(s)	324
AspLEI	GCGC	1 cut(s)	283
BaeGI	GKGCMC	1 cut(s)	158
BanII	GRGCYC	1 cut(s)	226
BbvI	GCAGC	2 cut(s)	38, 265
BccI	CCATC	1 cut(s)	142
BciT130I	CCWGG	1 cut(s)	263
BcoDI	GTCTC	1 cut(s)	293
BfaI	CTAG	2 cut(s)	176, 254
BfmI	CTRYAG	1 cut(s)	24
BisI	GCNGC	2 cut(s)	27, 279
BlsI	GCNGC	2 cut(s)	28, 280
Bme1390I	CCNGG	1 cut(s)	263
BmiI	GGNNCC	1 cut(s)	223
BmrFI	CCNGG	1 cut(s)	263
BpmI	CTGGAG	3 cut(s)	55, 123, 293
BpuEI	CTTGAG	1 cut(s)	287
Bse1I	ACTGG	5 cut(s)	72, 101, 110, 119, 234
Bse3DI	GCAATG	1 cut(s)	248
BseBI	CCWGG	1 cut(s)	263
BseGI	GGATG	1 cut(s)	337
BseMI	GCAATG	1 cut(s)	248
BseMII	CTCAG	1 cut(s)	57
BseNI	ACTGG	5 cut(s)	72, 101, 110, 119, 234
BseSI	GKGCMC	1 cut(s)	158
BseXI	GCAGC	2 cut(s)	38, 265
BsgI	GTGCAG	2 cut(s)	207, 277
BshFI	GGCC	3 cut(s)	5, 261, 308
BsmAI	GTCTC	1 cut(s)	293
BsnI	GGCC	3 cut(s)	5, 261, 308
Bsp1286I	GDGCHC	2 cut(s)	158, 226
Bsp143I	GATC	1 cut(s)	268
BspACI	CCGC	1 cut(s)	81
BspANI	GGCC	3 cut(s)	5, 261, 308
BspCNI	CTCAG	1 cut(s)	56
BspLI	GGNNCC	1 cut(s)	223
BspMAI	CTGCAG	1 cut(s)	28
BspQI	GCTCTTC	1 cut(s)	36
BsrDI	GCAATG	1 cut(s)	248
BsrI	ACTGG	5 cut(s)	72, 101, 110, 119, 234
BssMI	GATC	1 cut(s)	268
Bst2UI	CCWGG	1 cut(s)	263
Bst4CI	ACNGT	1 cut(s)	379
Bst6I	CTCTTC	3 cut(s)	13, 36, 64
BstC8I	GCNNGC	4 cut(s)	79, 92, 353, 367
BstDEI	CTNAG	2 cut(s)	43, 359
BstF5I	GGATG	1 cut(s)	337
BstHHI	GCGC	1 cut(s)	283
BstKTI	GATC	1 cut(s)	271
BstMAI	GTCTC	1 cut(s)	293
BstMBI	GATC	1 cut(s)	268
BstMWI	GCNNNNNNNGC	2 cut(s)	87, 305
BstNI	CCWGG	1 cut(s)	263
BstNSI	RCATGY	1 cut(s)	90
BstSCI	CCNGG	1 cut(s)	261
BstSFI	CTRYAG	1 cut(s)	24
BstSLI	GKGCMC	1 cut(s)	158
BstV1I	GCAGC	2 cut(s)	38, 265
BsuRI	GGCC	3 cut(s)	5, 261, 308
BtsCI	GGATG	1 cut(s)	337
BtsI	GCAGTG	1 cut(s)	294
BtsIMutI	CAGTG	2 cut(s)	79, 294
Cac8I	GCNNGC	4 cut(s)	79, 92, 353, 367
CfoI	GCGC	1 cut(s)	283
Csp6I	GTAC	2 cut(s)	84, 380
CviAII	CATG	1 cut(s)	87
CviQI	GTAC	2 cut(s)	84, 380
DdeI	CTNAG	2 cut(s)	43, 359
DpnI	GATC	1 cut(s)	270
DpnII	GATC	1 cut(s)	268
Eam1104I	CTCTTC	3 cut(s)	13, 36, 64
EarI	CTCTTC	3 cut(s)	13, 36, 64
Eco147I	AGGCCT	1 cut(s)	261
Eco24I	GRGCYC	1 cut(s)	226
EcoRII	CCWGG	1 cut(s)	261
EcoT38I	GRGCYC	1 cut(s)	226
FaeI	CATG	1 cut(s)	90
FaiI	YATR	1 cut(s)	88
FatI	CATG	1 cut(s)	86
Fnu4HI	GCNGC	2 cut(s)	27, 279
FokI	GGATG	1 cut(s)	344
FriOI	GRGCYC	1 cut(s)	226
Fsp4HI	GCNGC	2 cut(s)	27, 279
FspBI	CTAG	2 cut(s)	176, 254
GlaI	GCGC	1 cut(s)	282
GluI	GCNGC	2 cut(s)	27, 279
GsuI	CTGGAG	3 cut(s)	55, 123, 293
HaeIII	GGCC	3 cut(s)	5, 261, 308
HhaI	GCGC	1 cut(s)	283
Hin1II	CATG	1 cut(s)	90
Hin6I	GCGC	1 cut(s)	281
HinP1I	GCGC	1 cut(s)	281
HinfI	GANTC	1 cut(s)	208
Hpy188III	TCNNGA	1 cut(s)	272
HpyAV	CCTTC	4 cut(s)	59, 203, 251, 393
HpyCH4III	ACNGT	1 cut(s)	379
HpyCH4IV	ACGT	1 cut(s)	167
HpyCH4V	TGCA	5 cut(s)	26, 90, 188, 248, 294
HpyF10VI	GCNNNNNNNGC	2 cut(s)	87, 305
HpyF3I	CTNAG	2 cut(s)	43, 359
HpySE526I	ACGT	1 cut(s)	167
Hsp92II	CATG	1 cut(s)	90
HspAI	GCGC	1 cut(s)	281
Kzo9I	GATC	1 cut(s)	268
LguI	GCTCTTC	1 cut(s)	36
LmnI	GCTCC	1 cut(s)	221
Lsp1109I	GCAGC	2 cut(s)	38, 265
MaeI	CTAG	2 cut(s)	176, 254
MaeII	ACGT	1 cut(s)	167
MaeIII	GTNAC	2 cut(s)	103, 121
MalI	GATC	1 cut(s)	270
MboI	GATC	1 cut(s)	268
MboII	GAAGA	3 cut(s)	23, 31, 51
MhlI	GDGCHC	2 cut(s)	158, 226
MluCI	AATT	3 cut(s)	216, 325, 339
MmeI	TCCRAC	2 cut(s)	36, 254
MnlI	CCTC	3 cut(s)	16, 237, 268
MseI	TTAA	1 cut(s)	324
MspA1I	CMGCKG	1 cut(s)	143
MspR9I	CCNGG	1 cut(s)	263
MvaI	CCWGG	1 cut(s)	263
MwoI	GCNNNNNNNGC	2 cut(s)	87, 305
NdeII	GATC	1 cut(s)	268
NlaIII	CATG	1 cut(s)	90
NlaIV	GGNNCC	1 cut(s)	223
NspI	RCATGY	1 cut(s)	90
PceI	AGGCCT	1 cut(s)	261
PciSI	GCTCTTC	1 cut(s)	36
PfeI	GAWTC	1 cut(s)	208
PkrI	GCNGC	2 cut(s)	28, 280
PshBI	ATTAAT	1 cut(s)	324
Psp6I	CCWGG	1 cut(s)	261
PspGI	CCWGG	1 cut(s)	261
PspN4I	GGNNCC	1 cut(s)	223
PstI	CTGCAG	1 cut(s)	28
PvuII	CAGCTG	1 cut(s)	143
RsaI	GTAC	2 cut(s)	85, 381
RsaNI	GTAC	2 cut(s)	84, 380
SapI	GCTCTTC	1 cut(s)	36
SaqAI	TTAA	1 cut(s)	324
SatI	GCNGC	2 cut(s)	27, 279
Sau3AI	GATC	1 cut(s)	268
ScrFI	CCNGG	1 cut(s)	263
SduI	GDGCHC	2 cut(s)	158, 226
SetI	ASST	8 cut(s)	21, 31, 145, 170, 177, 195, 353, 385
SfcI	CTRYAG	1 cut(s)	24
SmlI	CTYRAG	1 cut(s)	302
SmoI	CTYRAG	1 cut(s)	302
Sse9I	AATT	3 cut(s)	216, 325, 339
SseBI	AGGCCT	1 cut(s)	261
SsiI	CCGC	1 cut(s)	81
SspMI	CTAG	2 cut(s)	176, 254
StuI	AGGCCT	1 cut(s)	261
StyD4I	CCNGG	1 cut(s)	261
TaaI	ACNGT	1 cut(s)	379
TaiI	ACGT	1 cut(s)	170
TasI	AATT	3 cut(s)	216, 325, 339
TfiI	GAWTC	1 cut(s)	208
Tru1I	TTAA	1 cut(s)	324
Tru9I	TTAA	1 cut(s)	324
TscAI	CASTG	2 cut(s)	79, 301
TseI	GCWGC	2 cut(s)	26, 278
TspRI	CASTG	2 cut(s)	79, 301
VspI	ATTAAT	1 cut(s)	324
XceI	RCATGY	1 cut(s)	90
XspI	CTAG	2 cut(s)	176, 254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.