Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0007578

Physical Location & Seq

Genomic Coordinates Reverse (-)

10626983 .. 10627432

Gene Structure 450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011572

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGCTTCTTCCACCAATCTCTCTGCAACCCTTCTCGTCTTCTCAGTCCTTCTCTACTCTTCAACATTCTCCAGTGCTTGCGGCACATGCAACCCTGCACCTAAAACCCCAAAACCACCACCAGCACTGGCACCAACACCAATAACACCGGTACCAACAACACCAATAAAACCAACACCAGCACCAGCTATGGAAACTTGCCCGAGAGACACGTTGAAGTTAGGGGTTTGTGCAGACCTTCTGGGACTCGTGAACGTTCAAATTGGATCGCCAGCAACCAGTCCCTGCTGTGCACTGCTTGAAGGCTTGGCTGATTTGGAGGCTGCTCTTTGTCTTTGCACCGCGCTTAAGGCCAATGTGCTTGGTATTAACGTGGACGTTCCAATTGCTTTGAATTTGCTTGTTAGTGCTTGCCAGAAAACTGTCCCTCCTGGTTTTAAATGCGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hydrophob_seed

Protein Analysis

150

Amino Acids

15.13

Weight (kDa)

6.16

Isoelectric Point (pI)

40.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	57 - 148	1.9e-08	Probable lipid transfer
Hydrophob_seed	PF14547	66 - 148	5.3e-28	Hydrophobic seed protein
Tryp_alpha_amyl	PF00234	67 - 148	8.8e-14	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007578)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g28920
malus_domestica	MD15G1126700.v1.1
prunus_persica	Prupe.1G482500_v2.0.a1
pyrus_communis	pycom15g11430
rosa_chinensis	RchiOBHm_Chr6g0297661 RchiOBHm_Chr6g0297721 RchiOBHm_Chr6g0297741
rosa_laevigata	RLG00000011567 RLG00000011572
rosa_multiflora	Rmu_co8194776.1_g000001 Rmu_sc0007683.1_g000005 Rmu_sc0007847.1_g000004
rosa_roxburghii	Rroxscaffold_7G00170240 Rroxscaffold_7G00170260 Rroxscaffold_7G00179090
rosa_rugosa	Rorug06G0274800 Rorug06G0275100
rosa_samantha	Rh6AG385400 Rh6AG385600 Rh6BG394100 Rh6CG399900 Rh6DG386300
rosa_wichuraiana	Rw6G033580 Rw6G033610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	151
AccB1I	GGYRCC	2 cut(s)	130, 151
AccII	CGCG	1 cut(s)	344
AciI	CCGC	2 cut(s)	81, 342
AclI	AACGTT	1 cut(s)	255
AclWI	GGATC	1 cut(s)	274
AcsI	RAATTY	1 cut(s)	394
AfaI	GTAC	1 cut(s)	153
AflII	CTTAAG	1 cut(s)	347
AflIII	ACRYGT	1 cut(s)	210
AgeI	ACCGGT	1 cut(s)	148
AgsI	TTSAA	5 cut(s)	63, 217, 260, 302, 394
AjnI	CCWGG	1 cut(s)	430
AluBI	AGCT	1 cut(s)	188
AluI	AGCT	1 cut(s)	188
Alw21I	GWGCWC	1 cut(s)	295
Alw26I	GTCTC	1 cut(s)	201
Alw44I	GTGCAC	1 cut(s)	291
AlwI	GGATC	1 cut(s)	274
AlwNI	CAGNNNCTG	1 cut(s)	285
Ama87I	CYCGRG	1 cut(s)	202
AoxI	GGCC	1 cut(s)	351
ApaLI	GTGCAC	1 cut(s)	291
ApeKI	GCWGC	1 cut(s)	323
ApoI	RAATTY	1 cut(s)	394
AsiGI	ACCGGT	1 cut(s)	148
Asp718I	GGTACC	1 cut(s)	151
AspLEI	GCGC	1 cut(s)	346
AvaI	CYCGRG	1 cut(s)	202
BaeGI	GKGCMC	1 cut(s)	295
BaeI	ACNNNNGTAYC	2 cut(s)	135, 168
BanI	GGYRCC	2 cut(s)	130, 151
BauI	CACGAG	1 cut(s)	248
BbsI	GAAGAC	1 cut(s)	31
Bbv12I	GWGCWC	1 cut(s)	295
BbvI	GCAGC	1 cut(s)	310
BciT130I	CCWGG	1 cut(s)	432
BcoDI	GTCTC	1 cut(s)	201
BfrI	CTTAAG	1 cut(s)	347
BisI	GCNGC	2 cut(s)	82, 324
BlsI	GCNGC	2 cut(s)	83, 325
Bme1390I	CCNGG	1 cut(s)	432
BmeT110I	CYCGRG	1 cut(s)	202
BmiI	GGNNCC	2 cut(s)	132, 153
BmrFI	CCNGG	1 cut(s)	432
BpiI	GAAGAC	1 cut(s)	31
BpmI	CTGGAG	1 cut(s)	55
BsaWI	WCCGGW	1 cut(s)	148
BsaXI	ACNNNNNCTCC	2 cut(s)	412, 442
Bse118I	RCCGGY	1 cut(s)	148
Bse1I	ACTGG	3 cut(s)	72, 132, 279
BseBI	CCWGG	1 cut(s)	432
BseMII	CTCAG	1 cut(s)	57
BseNI	ACTGG	3 cut(s)	72, 132, 279
BseSI	GKGCMC	1 cut(s)	295
BseXI	GCAGC	1 cut(s)	310
BsgI	GTGCAG	2 cut(s)	81, 252
Bsh1236I	CGCG	1 cut(s)	344
BshFI	GGCC	1 cut(s)	353
BshNI	GGYRCC	2 cut(s)	130, 151
BshTI	ACCGGT	1 cut(s)	148
BsiHKAI	GWGCWC	1 cut(s)	295
BsiHKCI	CYCGRG	1 cut(s)	202
BsiSI	CCGG	1 cut(s)	149
BslFI	GGGAC	3 cut(s)	258, 267, 410
BsmAI	GTCTC	1 cut(s)	201
BsmFI	GGGAC	3 cut(s)	258, 267, 410
BsnI	GGCC	1 cut(s)	353
BsoBI	CYCGRG	1 cut(s)	202
Bsp1286I	GDGCHC	1 cut(s)	295
Bsp143I	GATC	1 cut(s)	266
BspACI	CCGC	2 cut(s)	81, 342
BspANI	GGCC	1 cut(s)	353
BspCNI	CTCAG	1 cut(s)	56
BspFNI	CGCG	1 cut(s)	344
BspLI	GGNNCC	2 cut(s)	132, 153
BspPI	GGATC	1 cut(s)	274
BspT107I	GGYRCC	2 cut(s)	130, 151
BspTI	CTTAAG	1 cut(s)	347
BsrFI	RCCGGY	1 cut(s)	148
BsrI	ACTGG	3 cut(s)	72, 132, 279
BssAI	RCCGGY	1 cut(s)	148
BssMI	GATC	1 cut(s)	266
BssSI	CACGAG	1 cut(s)	248
Bst2BI	CACGAG	1 cut(s)	248
Bst2UI	CCWGG	1 cut(s)	432
Bst4CI	ACNGT	1 cut(s)	424
Bst6I	CTCTTC	1 cut(s)	64
BstAFI	CTTAAG	1 cut(s)	347
BstC8I	GCNNGC	3 cut(s)	79, 273, 412
BstDEI	CTNAG	1 cut(s)	43
BstFNI	CGCG	1 cut(s)	344
BstHHI	GCGC	1 cut(s)	346
BstKTI	GATC	1 cut(s)	269
BstMAI	GTCTC	1 cut(s)	201
BstMBI	GATC	1 cut(s)	266
BstMWI	GCNNNNNNNGC	2 cut(s)	87, 350
BstNI	CCWGG	1 cut(s)	432
BstNSI	RCATGY	1 cut(s)	90
BstSCI	CCNGG	1 cut(s)	430
BstSLI	GKGCMC	1 cut(s)	295
BstUI	CGCG	1 cut(s)	344
BstV1I	GCAGC	1 cut(s)	310
BstV2I	GAAGAC	1 cut(s)	31
BsuRI	GGCC	1 cut(s)	353
BtsI	GCAGTG	1 cut(s)	293
BtsIMutI	CAGTG	3 cut(s)	79, 125, 293
Cac8I	GCNNGC	3 cut(s)	79, 273, 412
CaiI	CAGNNNCTG	1 cut(s)	285
CfoI	GCGC	1 cut(s)	346
Cfr10I	RCCGGY	1 cut(s)	148
Csp6I	GTAC	1 cut(s)	152
CspAI	ACCGGT	1 cut(s)	148
CviAII	CATG	1 cut(s)	87
CviJI	RGCY	6 cut(s)	5, 188, 306, 311, 323, 353
CviKI_1	RGCY	6 cut(s)	5, 188, 306, 311, 323, 353
CviQI	GTAC	1 cut(s)	152
DdeI	CTNAG	1 cut(s)	43
DpnI	GATC	1 cut(s)	268
DpnII	GATC	1 cut(s)	266
DraI	TTTAAA	1 cut(s)	439
Eam1104I	CTCTTC	1 cut(s)	64
EarI	CTCTTC	1 cut(s)	64
Eco88I	CYCGRG	1 cut(s)	202
EcoRII	CCWGG	1 cut(s)	430
FaeI	CATG	1 cut(s)	90
FaiI	YATR	2 cut(s)	88, 191
FaqI	GGGAC	3 cut(s)	258, 267, 410
FatI	CATG	1 cut(s)	86
Fnu4HI	GCNGC	2 cut(s)	82, 324
Fsp4HI	GCNGC	2 cut(s)	82, 324
GlaI	GCGC	1 cut(s)	345
GluI	GCNGC	2 cut(s)	82, 324
GsuI	CTGGAG	1 cut(s)	55
HaeIII	GGCC	1 cut(s)	353
HapII	CCGG	1 cut(s)	149
HhaI	GCGC	1 cut(s)	346
Hin1II	CATG	1 cut(s)	90
Hin6I	GCGC	1 cut(s)	344
HinP1I	GCGC	1 cut(s)	344
HinfI	GANTC	1 cut(s)	246
HpaII	CCGG	1 cut(s)	149
Hpy166II	GTNNAC	3 cut(s)	253, 293, 376
Hpy188III	TCNNGA	1 cut(s)	250
Hpy8I	GTNNAC	3 cut(s)	253, 293, 376
HpyAV	CCTTC	4 cut(s)	41, 59, 248, 296
HpyCH4III	ACNGT	1 cut(s)	424
HpyCH4IV	ACGT	4 cut(s)	212, 255, 372, 378
HpyCH4V	TGCA	6 cut(s)	26, 90, 98, 233, 293, 339
HpyF10VI	GCNNNNNNNGC	2 cut(s)	87, 350
HpyF3I	CTNAG	1 cut(s)	43
HpySE526I	ACGT	4 cut(s)	212, 255, 372, 378
Hsp92II	CATG	1 cut(s)	90
HspAI	GCGC	1 cut(s)	344
KpnI	GGTACC	1 cut(s)	155
Kzo9I	GATC	1 cut(s)	266
Lsp1109I	GCAGC	1 cut(s)	310
MaeII	ACGT	4 cut(s)	212, 255, 372, 378
MalI	GATC	1 cut(s)	268
MboI	GATC	1 cut(s)	266
MboII	GAAGA	2 cut(s)	31, 51
MfeI	CAATTG	1 cut(s)	384
MhlI	GDGCHC	1 cut(s)	295
MluCI	AATT	3 cut(s)	261, 384, 394
MlyI	GAGTC	1 cut(s)	240
MnlI	CCTC	2 cut(s)	313, 438
MseI	TTAA	3 cut(s)	348, 369, 438
MspCI	CTTAAG	1 cut(s)	347
MspI	CCGG	1 cut(s)	149
MspR9I	CCNGG	1 cut(s)	432
MunI	CAATTG	1 cut(s)	384
MvaI	CCWGG	1 cut(s)	432
MvnI	CGCG	1 cut(s)	344
MwoI	GCNNNNNNNGC	2 cut(s)	87, 350
NdeII	GATC	1 cut(s)	266
NlaIII	CATG	1 cut(s)	90
NlaIV	GGNNCC	2 cut(s)	132, 153
NspI	RCATGY	1 cut(s)	90
PinAI	ACCGGT	1 cut(s)	148
PkrI	GCNGC	2 cut(s)	83, 325
PleI	GAGTC	1 cut(s)	240
PpsI	GAGTC	1 cut(s)	240
Psp1406I	AACGTT	1 cut(s)	255
Psp6I	CCWGG	1 cut(s)	430
PspGI	CCWGG	1 cut(s)	430
PspN4I	GGNNCC	2 cut(s)	132, 153
PstNI	CAGNNNCTG	1 cut(s)	285
RsaI	GTAC	1 cut(s)	153
RsaNI	GTAC	1 cut(s)	152
SaqAI	TTAA	3 cut(s)	348, 369, 438
SatI	GCNGC	2 cut(s)	82, 324
Sau3AI	GATC	1 cut(s)	266
SchI	GAGTC	1 cut(s)	240
ScrFI	CCNGG	1 cut(s)	432
SduI	GDGCHC	1 cut(s)	295
SetI	ASST	7 cut(s)	103, 190, 215, 240, 258, 375, 381
SmlI	CTYRAG	1 cut(s)	347
SmoI	CTYRAG	1 cut(s)	347
Sse9I	AATT	3 cut(s)	261, 384, 394
SsiI	CCGC	2 cut(s)	81, 342
StyD4I	CCNGG	1 cut(s)	430
TaaI	ACNGT	1 cut(s)	424
TaiI	ACGT	4 cut(s)	215, 258, 375, 381
TasI	AATT	3 cut(s)	261, 384, 394
TauI	GCSGC	1 cut(s)	84
Tru1I	TTAA	3 cut(s)	348, 369, 438
Tru9I	TTAA	3 cut(s)	348, 369, 438
TscAI	CASTG	3 cut(s)	79, 132, 300
TseI	GCWGC	1 cut(s)	323
TspRI	CASTG	3 cut(s)	79, 132, 300
Vha464I	CTTAAG	1 cut(s)	347
VneI	GTGCAC	1 cut(s)	291
XapI	RAATTY	1 cut(s)	394
XceI	RCATGY	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.