Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0009416

Physical Location & Seq

Genomic Coordinates Forward (+)

22629138 .. 22632201

Gene Structure 3064 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g29080.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGTTCAGTCATATATGAACTCGATAGACCCGAAAATAAAGATTCTAGAGAAAGCAAAGAATGAGGTGGATGCAGTGCAACCAGTATCGTGGGCAGACATGATTGCTGTGGCTGGAGCTGAAGCAGTTTCAGTGTGTGGAGGTCCGACTATCCGAGTTGCATTGGGCAGACTAGACTCCAAGGAGCCTGATCCTGAAGGAAAACTTCCTGAAGAAACTCTTGATGCTGCTGGTCTGAAGCAAAGCTTTCAGACAAAAGGCTTTTCAACTCAAGAGCTGGTTGCTCTGTCAGGTGCTCATACTCTGGGAAATAAAGGTTTTGGAAGCCCAACTGTTTTTGACAATTCATACTTTAAAGTTCTTATTGAGGAATCCGTGTCTTCAGGTAGTATGTCAAGCATGACGGGGCTTCCTTCAGATCGCGCACTTCCAAAAGATGAAGAATGCTTAAGATGGATCAAAAAGTATGCCGACGATCAGAACACTTTCTTTGAAGATTTTGAGAAGGCTTACATCAAGTTAGTGAATTCAGGAGCAAGATGGAAGAGCTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000302 GO:0003006 GO:0003674 GO:0003824 GO:0004130 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009636 GO:0009791 GO:0009845 GO:0009987 GO:0010154 GO:0010431 GO:0016209 GO:0016491 GO:0016684 GO:0016999 GO:0017001 GO:0017144 GO:0021700 GO:0022414 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0034599 GO:0042221 GO:0042737 GO:0042743 GO:0042744 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051186 GO:0051187 GO:0051716 GO:0055114 GO:0061458 GO:0070887 GO:0071695 GO:0072593 GO:0090351 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00053 ko00480 map00053 map00480

Pfam Domains

Protein Families

peroxidase

Protein Analysis

185

Amino Acids

20.04

Weight (kDa)

5.03

Isoelectric Point (pI)

48.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	28 - 120	4e-13	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0009416)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32320
fragaria_vesca	FvH4_2g29080 FvH4_2g29080 FvH4_2g29080 FvH4_2g29080 FvH4_2g29080
malus_domestica	MD15G1125400.v1.1
prunus_persica	Prupe.1G481000_v2.0.a1
pyrus_communis	pycom08g12640
rosa_chinensis	RchiOBHm_Chr6g0297961
rosa_laevigata	RLG00000011548
rosa_multiflora	Rmu_sc0007302.1_g000002 Rmu_sc0034417.1_g000001
rosa_roxburghii	Rroxscaffold_7G00170050 Rroxscaffold_7G00178890
rosa_rugosa	Rorug06G0277100 Rorug06G0277200
rosa_samantha	Rh6AG387700 Rh6CG401900 Rh6DG388200
rosa_wichuraiana	Rw6G033770 Rw6G033830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	423
AclWI	GGATC	2 cut(s)	185, 464
AcsI	RAATTY	1 cut(s)	526
AcuI	CTGAAG	6 cut(s)	141, 216, 231, 257, 366, 399
AflII	CTTAAG	1 cut(s)	448
AgsI	TTSAA	2 cut(s)	267, 494
AluBI	AGCT	4 cut(s)	119, 246, 277, 549
AluI	AGCT	4 cut(s)	119, 246, 277, 549
Alw21I	GWGCWC	1 cut(s)	298
AlwI	GGATC	2 cut(s)	185, 464
ApeKI	GCWGC	1 cut(s)	227
ApoI	RAATTY	1 cut(s)	526
Asp700I	GAANNNNTTC	1 cut(s)	485
AspLEI	GCGC	1 cut(s)	425
AspS9I	GGNCC	1 cut(s)	143
AvaII	GGWCC	1 cut(s)	143
BbsI	GAAGAC	1 cut(s)	372
Bbv12I	GWGCWC	1 cut(s)	298
BbvI	GCAGC	1 cut(s)	214
BccI	CCATC	2 cut(s)	447, 534
BfaI	CTAG	2 cut(s)	47, 173
BfrI	CTTAAG	1 cut(s)	448
BisI	GCNGC	1 cut(s)	228
BlsI	GCNGC	1 cut(s)	229
Bme18I	GGWCC	1 cut(s)	143
BmgT120I	GGNCC	1 cut(s)	143
BmiI	GGNNCC	1 cut(s)	186
BmsI	GCATC	2 cut(s)	61, 214
BpiI	GAAGAC	1 cut(s)	372
BpmI	CTGGAG	1 cut(s)	135
BpuEI	CTTGAG	1 cut(s)	255
BsaJI	CCNNGG	1 cut(s)	180
Bse1I	ACTGG	1 cut(s)	83
BseDI	CCNNGG	1 cut(s)	180
BseGI	GGATG	1 cut(s)	76
BseNI	ACTGG	1 cut(s)	83
BseXI	GCAGC	1 cut(s)	214
Bsh1236I	CGCG	1 cut(s)	423
BsiHKAI	GWGCWC	1 cut(s)	298
BsmI	GAATGC	1 cut(s)	449
Bsp1286I	GDGCHC	1 cut(s)	298
Bsp143I	GATC	4 cut(s)	190, 418, 456, 475
BspFNI	CGCG	1 cut(s)	423
BspLI	GGNNCC	1 cut(s)	186
BspPI	GGATC	2 cut(s)	185, 464
BspQI	GCTCTTC	1 cut(s)	539
BspTI	CTTAAG	1 cut(s)	448
BsrI	ACTGG	1 cut(s)	83
BssECI	CCNNGG	1 cut(s)	180
BssMI	GATC	4 cut(s)	190, 418, 456, 475
BssT1I	CCWWGG	1 cut(s)	180
Bst4CI	ACNGT	1 cut(s)	334
Bst6I	CTCTTC	1 cut(s)	539
BstAFI	CTTAAG	1 cut(s)	448
BstF5I	GGATG	1 cut(s)	76
BstFNI	CGCG	1 cut(s)	423
BstHHI	GCGC	1 cut(s)	425
BstKTI	GATC	4 cut(s)	193, 421, 459, 478
BstMBI	GATC	4 cut(s)	190, 418, 456, 475
BstUI	CGCG	1 cut(s)	423
BstV1I	GCAGC	1 cut(s)	214
BstV2I	GAAGAC	1 cut(s)	372
BstXI	CCANNNNNNTGG	1 cut(s)	90
BtsCI	GGATG	1 cut(s)	76
BtsI	GCAGTG	1 cut(s)	81
BtsIMutI	CAGTG	2 cut(s)	81, 138
CfoI	GCGC	1 cut(s)	425
Cfr13I	GGNCC	1 cut(s)	143
CviAII	CATG	2 cut(s)	100, 400
DpnI	GATC	4 cut(s)	192, 420, 458, 477
DpnII	GATC	4 cut(s)	190, 418, 456, 475
DraI	TTTAAA	1 cut(s)	355
Eam1104I	CTCTTC	1 cut(s)	539
EarI	CTCTTC	1 cut(s)	539
Eco130I	CCWWGG	1 cut(s)	180
Eco47I	GGWCC	1 cut(s)	143
Eco57I	CTGAAG	6 cut(s)	141, 216, 231, 257, 366, 399
EcoRI	GAATTC	1 cut(s)	526
EcoT14I	CCWWGG	1 cut(s)	180
ErhI	CCWWGG	1 cut(s)	180
FaeI	CATG	2 cut(s)	103, 403
FalI	AAGNNNNNCTT	6 cut(s)	189, 221, 204, 236, 230, 262
FatI	CATG	2 cut(s)	99, 399
Fnu4HI	GCNGC	1 cut(s)	228
FokI	GGATG	1 cut(s)	83
Fsp4HI	GCNGC	1 cut(s)	228
FspBI	CTAG	2 cut(s)	47, 173
GlaI	GCGC	1 cut(s)	424
GluI	GCNGC	1 cut(s)	228
GsuI	CTGGAG	1 cut(s)	135
HhaI	GCGC	1 cut(s)	425
Hin1II	CATG	2 cut(s)	103, 403
Hin6I	GCGC	1 cut(s)	423
HinP1I	GCGC	1 cut(s)	423
HindIII	AAGCTT	1 cut(s)	244
HinfI	GANTC	3 cut(s)	43, 176, 371
Hpy188I	TCNGA	6 cut(s)	147, 155, 237, 252, 418, 480
Hpy188III	TCNNGA	6 cut(s)	47, 194, 209, 221, 272, 531
Hpy99I	CGWCG	1 cut(s)	476
HpyAV	CCTTC	3 cut(s)	191, 423, 499
HpyCH4III	ACNGT	1 cut(s)	334
HpyCH4V	TGCA	3 cut(s)	74, 79, 161
Hsp92II	CATG	2 cut(s)	103, 403
HspAI	GCGC	1 cut(s)	423
Kzo9I	GATC	4 cut(s)	190, 418, 456, 475
LguI	GCTCTTC	1 cut(s)	539
LmnI	GCTCC	3 cut(s)	116, 184, 533
Lsp1109I	GCAGC	1 cut(s)	214
LweI	GCATC	2 cut(s)	61, 214
MaeI	CTAG	2 cut(s)	47, 173
MalI	GATC	4 cut(s)	192, 420, 458, 477
MboI	GATC	4 cut(s)	190, 418, 456, 475
MboII	GAAGA	4 cut(s)	224, 372, 452, 506
MhlI	GDGCHC	1 cut(s)	298
MluCI	AATT	2 cut(s)	343, 526
MlyI	GAGTC	1 cut(s)	170
MmeI	TCCRAC	1 cut(s)	170
MnlI	CCTC	3 cut(s)	58, 134, 361
MroXI	GAANNNNTTC	1 cut(s)	485
MseI	TTAA	2 cut(s)	354, 449
MspCI	CTTAAG	1 cut(s)	448
Mva1269I	GAATGC	1 cut(s)	449
MvnI	CGCG	1 cut(s)	423
NdeII	GATC	4 cut(s)	190, 418, 456, 475
NlaIII	CATG	2 cut(s)	103, 403
NlaIV	GGNNCC	1 cut(s)	186
PciSI	GCTCTTC	1 cut(s)	539
PcsI	WCGNNNNNNNCGW	1 cut(s)	29
PctI	GAATGC	1 cut(s)	449
PdmI	GAANNNNTTC	1 cut(s)	485
PfeI	GAWTC	2 cut(s)	43, 371
PkrI	GCNGC	1 cut(s)	229
PleI	GAGTC	1 cut(s)	170
PpsI	GAGTC	1 cut(s)	170
PspN4I	GGNNCC	1 cut(s)	186
PspPI	GGNCC	1 cut(s)	143
SapI	GCTCTTC	1 cut(s)	539
SaqAI	TTAA	2 cut(s)	354, 449
SatI	GCNGC	1 cut(s)	228
Sau3AI	GATC	4 cut(s)	190, 418, 456, 475
Sau96I	GGNCC	1 cut(s)	143
SchI	GAGTC	1 cut(s)	170
SduI	GDGCHC	1 cut(s)	298
SetI	ASST	9 cut(s)	69, 121, 145, 248, 279, 295, 319, 388, 551
SfaNI	GCATC	2 cut(s)	61, 214
SinI	GGWCC	1 cut(s)	143
SmlI	CTYRAG	2 cut(s)	270, 448
SmoI	CTYRAG	2 cut(s)	270, 448
Sse9I	AATT	2 cut(s)	343, 526
SspMI	CTAG	2 cut(s)	47, 173
StyI	CCWWGG	1 cut(s)	180
TaaI	ACNGT	1 cut(s)	334
TaqI	TCGA	1 cut(s)	23
TasI	AATT	2 cut(s)	343, 526
TfiI	GAWTC	2 cut(s)	43, 371
Tru1I	TTAA	2 cut(s)	354, 449
Tru9I	TTAA	2 cut(s)	354, 449
TscAI	CASTG	2 cut(s)	81, 138
TseI	GCWGC	1 cut(s)	227
TspDTI	ATGAA	3 cut(s)	32, 336, 453
TspGWI	ACGGA	1 cut(s)	364
TspRI	CASTG	2 cut(s)	81, 138
Vha464I	CTTAAG	1 cut(s)	448
VpaK11BI	GGWCC	1 cut(s)	143
XapI	RAATTY	1 cut(s)	526
XbaI	TCTAGA	1 cut(s)	46
XmnI	GAANNNNTTC	1 cut(s)	485
XspI	CTAG	2 cut(s)	47, 173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.