Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0009416

Physical Location & Seq

Genomic Coordinates Forward (+)

58092536 .. 58094966

Gene Structure 2431 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG388200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGCATCATCATCAACTACCTCCACCGCCGTCTCCCTCCTCTGCTCCGCAACCTCTTCCTCCAGATTTCCATTCAGTACAACTCTTCCCGCCAAATCCTCATCAACGCTCAATTTTCGCGCCAACTCTCTCCCCGCCACCCATGCAGCTTCTTCAGGTAAAGATGAGATTTTGGGGAGAAGAGGACTGGTGTTCACACTCACAGCCACACTGCCATTGCTTCTTCCTTTCTCGGAATCCATGGAGGCCTTTACAGCCAAGGCGGTGGAGCCAGATACAAGTGTATATGAGGTTATGAAGGAAGAGATTAGGAAAGTTGTGTCTAAGGGCAAAGCTGCTGGTGTGCTTCGTTTTGTATTTCATGATGCAGGGACCTTTCAATTGGATGACAATTCGGGTGGCATGAATGGTTCAGTCATATATGAACTCGATAGACCCGAAAATAAAGGTCTTAAAACTCCTTTTAAGATTTTAGAGAAAGCAAAGACTGAGGTGGATGCAGTACAACCAGTATCGTGGGCAGACATGATTGCTGTGGCTGGAGCTGAAGCAGTTTCAGTATGTGGAGGTCCGACTATCCCAGTTGCATTGGGCAGACTAGACTCAAAGGAGCCTGATCCTGAAGGAAAACTTCCTGAAGAAACTCTTGATGCTTATGGTCTAAAGCAAAGCTTTCGAGCAAAAGGCTTATCAACTCAAGAACTTGTTGCTCTGTCAGGTGCCCATACTCTGGGAAATAAAGGTTTTGGAAGCCCAACTGTTTTTGACAATTCATACTTCAAAGTTCTTCTTGAGGAATCTGTGTCCTCAGGTAGTATGTCAAGCATGACTGGACTTCCTTCAGATCGCGCACTTCCCAAGGATGATGAATGCTTAAGATGGATAAAAAAGTATGCCGACAATGAGAACAGTTTCTTTGAAGATTTTGAAAAGGCTTACATCAAGTTGGTCAATTCAGGAGCAAGGTGGAAGAGCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000302 GO:0003006 GO:0003674 GO:0003824 GO:0004130 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009636 GO:0009791 GO:0009845 GO:0009987 GO:0010154 GO:0010431 GO:0016209 GO:0016491 GO:0016684 GO:0016999 GO:0017001 GO:0017144 GO:0021700 GO:0022414 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0034599 GO:0042221 GO:0042737 GO:0042743 GO:0042744 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051186 GO:0051187 GO:0051716 GO:0055114 GO:0061458 GO:0070887 GO:0071695 GO:0072593 GO:0090351 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00053 ko00480 map00053 map00480

Pfam Domains

Protein Families

peroxidase

Protein Analysis

326

Amino Acids

34.98

Weight (kDa)

5.61

Isoelectric Point (pI)

43.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	98 - 301	8.5e-43	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0009416)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32320
fragaria_vesca	FvH4_2g29080 FvH4_2g29080 FvH4_2g29080 FvH4_2g29080 FvH4_2g29080
malus_domestica	MD15G1125400.v1.1
prunus_persica	Prupe.1G481000_v2.0.a1
pyrus_communis	pycom08g12640
rosa_chinensis	RchiOBHm_Chr6g0297961
rosa_laevigata	RLG00000011548
rosa_multiflora	Rmu_sc0007302.1_g000002 Rmu_sc0034417.1_g000001
rosa_roxburghii	Rroxscaffold_7G00170050 Rroxscaffold_7G00178890
rosa_rugosa	Rorug06G0277100 Rorug06G0277200
rosa_samantha	Rh6AG387700 Rh6CG401900 Rh6DG388200
rosa_wichuraiana	Rw6G033770 Rw6G033830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	719
AccB7I	CCANNNNNTGG	1 cut(s)	730
AccII	CGCG	2 cut(s)	120, 849
AciI	CCGC	5 cut(s)	27, 48, 90, 135, 263
AclWI	GGATC	1 cut(s)	611
AcuI	CTGAAG	5 cut(s)	138, 567, 642, 657, 825
AfaI	GTAC	2 cut(s)	79, 504
AfiI	CCNNNNNNNGG	1 cut(s)	730
AflII	CTTAAG	1 cut(s)	874
AgsI	TTSAA	4 cut(s)	380, 781, 920, 929
AluBI	AGCT	5 cut(s)	149, 335, 545, 672, 975
AluI	AGCT	5 cut(s)	149, 335, 545, 672, 975
Alw26I	GTCTC	1 cut(s)	37
AlwI	GGATC	1 cut(s)	611
AoxI	GGCC	1 cut(s)	246
ApeKI	GCWGC	2 cut(s)	146, 335
Asp700I	GAANNNNTTC	1 cut(s)	911
AspLEI	GCGC	2 cut(s)	122, 851
AspS9I	GGNCC	2 cut(s)	372, 569
AvaII	GGWCC	2 cut(s)	372, 569
AxyI	CCTNAGG	1 cut(s)	808
BaeGI	GKGCMC	1 cut(s)	724
BaeI	ACNNNNGTAYC	2 cut(s)	267, 300
BanI	GGYRCC	1 cut(s)	719
BbvI	GCAGC	2 cut(s)	158, 322
BccI	CCATC	1 cut(s)	873
BceAI	ACGGC	1 cut(s)	14
BcgI	CGANNNNNNTGC	2 cut(s)	656, 690
BcoDI	GTCTC	1 cut(s)	37
BfaI	CTAG	1 cut(s)	599
BfrI	CTTAAG	1 cut(s)	874
BisI	GCNGC	2 cut(s)	147, 336
BlsI	GCNGC	2 cut(s)	148, 337
Bme18I	GGWCC	2 cut(s)	372, 569
BmgT120I	GGNCC	2 cut(s)	372, 569
BmiI	GGNNCC	4 cut(s)	270, 373, 612, 721
BmrI	ACTGGG	1 cut(s)	575
BmsI	GCATC	4 cut(s)	14, 355, 487, 640
BmuI	ACTGGG	1 cut(s)	575
BpmI	CTGGAG	2 cut(s)	46, 561
BpuEI	CTTGAG	2 cut(s)	681, 812
BsaJI	CCNNGG	3 cut(s)	240, 258, 858
Bsc4I	CCNNNNNNNGG	1 cut(s)	730
Bse1I	ACTGG	4 cut(s)	192, 509, 581, 835
Bse21I	CCTNAGG	1 cut(s)	808
Bse3DI	GCAATG	1 cut(s)	215
BseDI	CCNNGG	3 cut(s)	240, 258, 858
BseGI	GGATG	3 cut(s)	391, 502, 868
BseLI	CCNNNNNNNGG	1 cut(s)	730
BseMI	GCAATG	1 cut(s)	215
BseMII	CTCAG	2 cut(s)	480, 822
BseNI	ACTGG	4 cut(s)	192, 509, 581, 835
BseRI	GAGGAG	1 cut(s)	29
BseSI	GKGCMC	1 cut(s)	724
BseXI	GCAGC	2 cut(s)	158, 322
Bsh1236I	CGCG	2 cut(s)	120, 849
BshFI	GGCC	1 cut(s)	248
BshNI	GGYRCC	1 cut(s)	719
BslFI	GGGAC	1 cut(s)	385
BslI	CCNNNNNNNGG	1 cut(s)	730
BsmAI	GTCTC	1 cut(s)	37
BsmBI	CGTCTC	1 cut(s)	37
BsmFI	GGGAC	1 cut(s)	385
BsmI	GAATGC	1 cut(s)	875
BsnI	GGCC	1 cut(s)	248
Bsp1286I	GDGCHC	1 cut(s)	724
Bsp143I	GATC	2 cut(s)	616, 844
Bsp19I	CCATGG	1 cut(s)	240
BspACI	CCGC	5 cut(s)	27, 48, 90, 135, 263
BspANI	GGCC	1 cut(s)	248
BspCNI	CTCAG	2 cut(s)	481, 821
BspFNI	CGCG	2 cut(s)	120, 849
BspHI	TCATGA	1 cut(s)	361
BspLI	GGNNCC	4 cut(s)	270, 373, 612, 721
BspPI	GGATC	1 cut(s)	611
BspQI	GCTCTTC	1 cut(s)	965
BspT107I	GGYRCC	1 cut(s)	719
BspTI	CTTAAG	1 cut(s)	874
BsrDI	GCAATG	1 cut(s)	215
BsrI	ACTGG	4 cut(s)	192, 509, 581, 835
BssECI	CCNNGG	3 cut(s)	240, 258, 858
BssMI	GATC	2 cut(s)	616, 844
BssT1I	CCWWGG	3 cut(s)	240, 258, 858
Bst4CI	ACNGT	2 cut(s)	760, 911
Bst6I	CTCTTC	5 cut(s)	61, 90, 175, 297, 965
BstAFI	CTTAAG	1 cut(s)	874
BstDEI	CTNAG	3 cut(s)	324, 489, 808
BstDSI	CCRYGG	1 cut(s)	240
BstF5I	GGATG	3 cut(s)	391, 502, 868
BstFNI	CGCG	2 cut(s)	120, 849
BstHHI	GCGC	2 cut(s)	122, 851
BstKTI	GATC	2 cut(s)	619, 847
BstMAI	GTCTC	1 cut(s)	37
BstMBI	GATC	2 cut(s)	616, 844
BstMWI	GCNNNNNNNGC	2 cut(s)	143, 254
BstSLI	GKGCMC	1 cut(s)	724
BstUI	CGCG	2 cut(s)	120, 849
BstV1I	GCAGC	2 cut(s)	158, 322
BstXI	CCANNNNNNTGG	2 cut(s)	265, 516
Bsu36I	CCTNAGG	1 cut(s)	808
BsuRI	GGCC	1 cut(s)	248
BtgI	CCRYGG	1 cut(s)	240
BtsCI	GGATG	3 cut(s)	391, 502, 868
BtsI	GCAGTG	1 cut(s)	209
BtsIMutI	CAGTG	1 cut(s)	209
CciI	TCATGA	1 cut(s)	361
CfoI	GCGC	2 cut(s)	122, 851
Cfr13I	GGNCC	2 cut(s)	372, 569
Csp6I	GTAC	2 cut(s)	78, 503
CspCI	CAANNNNNGTGG	2 cut(s)	379, 414
CviAII	CATG	6 cut(s)	143, 241, 362, 403, 526, 826
CviQI	GTAC	2 cut(s)	78, 503
DdeI	CTNAG	3 cut(s)	324, 489, 808
DpnI	GATC	2 cut(s)	618, 846
DpnII	GATC	2 cut(s)	616, 844
Eam1104I	CTCTTC	5 cut(s)	61, 90, 175, 297, 965
EarI	CTCTTC	5 cut(s)	61, 90, 175, 297, 965
Eco130I	CCWWGG	3 cut(s)	240, 258, 858
Eco147I	AGGCCT	1 cut(s)	248
Eco47I	GGWCC	2 cut(s)	372, 569
Eco57I	CTGAAG	5 cut(s)	138, 567, 642, 657, 825
Eco81I	CCTNAGG	1 cut(s)	808
EcoO109I	RGGNCCY	1 cut(s)	372
EcoT14I	CCWWGG	3 cut(s)	240, 258, 858
ErhI	CCWWGG	3 cut(s)	240, 258, 858
Esp3I	CGTCTC	1 cut(s)	37
FaeI	CATG	6 cut(s)	146, 244, 365, 406, 529, 829
FalI	AAGNNNNNCTT	8 cut(s)	615, 647, 630, 662, 656, 688, 774, 806
FaqI	GGGAC	1 cut(s)	385
FatI	CATG	6 cut(s)	142, 240, 361, 402, 525, 825
FauI	CCCGC	2 cut(s)	97, 142
Fnu4HI	GCNGC	2 cut(s)	147, 336
FokI	GGATG	3 cut(s)	398, 509, 875
Fsp4HI	GCNGC	2 cut(s)	147, 336
FspBI	CTAG	1 cut(s)	599
GlaI	GCGC	2 cut(s)	121, 850
GluI	GCNGC	2 cut(s)	147, 336
GsuI	CTGGAG	2 cut(s)	46, 561
HaeIII	GGCC	1 cut(s)	248
HhaI	GCGC	2 cut(s)	122, 851
Hin1II	CATG	6 cut(s)	146, 244, 365, 406, 529, 829
Hin6I	GCGC	2 cut(s)	120, 849
HinP1I	GCGC	2 cut(s)	120, 849
HindIII	AAGCTT	1 cut(s)	670
HinfI	GANTC	3 cut(s)	236, 602, 797
Hpy166II	GTNNAC	1 cut(s)	195
Hpy188I	TCNGA	3 cut(s)	235, 573, 844
Hpy188III	TCNNGA	8 cut(s)	63, 362, 620, 635, 647, 698, 791, 957
Hpy8I	GTNNAC	1 cut(s)	195
HpyAV	CCTTC	3 cut(s)	292, 617, 849
HpyCH4III	ACNGT	2 cut(s)	760, 911
HpyCH4V	TGCA	4 cut(s)	146, 368, 500, 587
HpyF10VI	GCNNNNNNNGC	2 cut(s)	143, 254
HpyF3I	CTNAG	3 cut(s)	324, 489, 808
Hsp92II	CATG	6 cut(s)	146, 244, 365, 406, 529, 829
HspAI	GCGC	2 cut(s)	120, 849
Kzo9I	GATC	2 cut(s)	616, 844
LguI	GCTCTTC	1 cut(s)	965
LmnI	GCTCC	5 cut(s)	50, 268, 542, 610, 959
Lsp1109I	GCAGC	2 cut(s)	158, 322
LweI	GCATC	4 cut(s)	14, 355, 487, 640
MaeI	CTAG	1 cut(s)	599
MalI	GATC	2 cut(s)	618, 846
MboI	GATC	2 cut(s)	616, 844
MboII	GAAGA	9 cut(s)	48, 77, 144, 192, 215, 314, 650, 779, 932
MfeI	CAATTG	1 cut(s)	380
MhlI	GDGCHC	1 cut(s)	724
MluCI	AATT	5 cut(s)	112, 380, 391, 769, 952
MlyI	GAGTC	1 cut(s)	596
MmeI	TCCRAC	1 cut(s)	596
MroXI	GAANNNNTTC	1 cut(s)	911
MseI	TTAA	3 cut(s)	453, 465, 875
MspCI	CTTAAG	1 cut(s)	874
MunI	CAATTG	1 cut(s)	380
Mva1269I	GAATGC	1 cut(s)	875
MvnI	CGCG	2 cut(s)	120, 849
MwoI	GCNNNNNNNGC	2 cut(s)	143, 254
NcoI	CCATGG	1 cut(s)	240
NdeII	GATC	2 cut(s)	616, 844
NlaIII	CATG	6 cut(s)	146, 244, 365, 406, 529, 829
NlaIV	GGNNCC	4 cut(s)	270, 373, 612, 721
PagI	TCATGA	1 cut(s)	361
PceI	AGGCCT	1 cut(s)	248
PciSI	GCTCTTC	1 cut(s)	965
PcsI	WCGNNNNNNNCGW	1 cut(s)	435
PctI	GAATGC	1 cut(s)	875
PdmI	GAANNNNTTC	1 cut(s)	911
PfeI	GAWTC	2 cut(s)	236, 797
PflMI	CCANNNNNTGG	1 cut(s)	730
PkrI	GCNGC	2 cut(s)	148, 337
PleI	GAGTC	1 cut(s)	596
PpsI	GAGTC	1 cut(s)	596
PpuMI	RGGWCCY	1 cut(s)	372
Psp5II	RGGWCCY	1 cut(s)	372
PspN4I	GGNNCC	4 cut(s)	270, 373, 612, 721
PspPI	GGNCC	2 cut(s)	372, 569
PspPPI	RGGWCCY	1 cut(s)	372
RsaI	GTAC	2 cut(s)	79, 504
RsaNI	GTAC	2 cut(s)	78, 503
SapI	GCTCTTC	1 cut(s)	965
SaqAI	TTAA	3 cut(s)	453, 465, 875
SatI	GCNGC	2 cut(s)	147, 336
Sau3AI	GATC	2 cut(s)	616, 844
Sau96I	GGNCC	2 cut(s)	372, 569
SchI	GAGTC	1 cut(s)	596
SduI	GDGCHC	1 cut(s)	724
SfaNI	GCATC	4 cut(s)	14, 355, 487, 640
SinI	GGWCC	2 cut(s)	372, 569
SmlI	CTYRAG	3 cut(s)	696, 791, 874
SmoI	CTYRAG	3 cut(s)	696, 791, 874
Sse9I	AATT	5 cut(s)	112, 380, 391, 769, 952
SseBI	AGGCCT	1 cut(s)	248
SsiI	CCGC	5 cut(s)	27, 48, 90, 135, 263
SspMI	CTAG	1 cut(s)	599
StuI	AGGCCT	1 cut(s)	248
StyI	CCWWGG	3 cut(s)	240, 258, 858
TaaI	ACNGT	2 cut(s)	760, 911
TaqI	TCGA	2 cut(s)	429, 676
TasI	AATT	5 cut(s)	112, 380, 391, 769, 952
TatI	WGTACW	2 cut(s)	77, 502
TfiI	GAWTC	2 cut(s)	236, 797
Tru1I	TTAA	3 cut(s)	453, 465, 875
Tru9I	TTAA	3 cut(s)	453, 465, 875
TscAI	CASTG	1 cut(s)	216
TseI	GCWGC	2 cut(s)	146, 335
TspDTI	ATGAA	6 cut(s)	311, 350, 419, 438, 762, 882
TspRI	CASTG	1 cut(s)	216
Van91I	CCANNNNNTGG	1 cut(s)	730
Vha464I	CTTAAG	1 cut(s)	874
VpaK11BI	GGWCC	2 cut(s)	372, 569
XmnI	GAANNNNTTC	1 cut(s)	911
XspI	CTAG	1 cut(s)	599

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.