Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0009416

Physical Location & Seq

Genomic Coordinates Reverse (-)

42467191 .. 42471903

Gene Structure 4713 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0277100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3429 bp

ATGGATTTATATGCCGAGTTTCTTTTCAAAGTACGGAACAGACAGGACGATCCTGAACTTCAAAAAGGGGAAGCTATTTCTCCAGCACTTTTTGCTGCAATTGAAGAATCGAGATTTGCTCTCATTGTTATCTCACAATATTATGCATCATCAACATGGTGCTTGGATGAACTAGTGAGATTTCTTGAATGCATGGAAGTAAAAGGAACTGTGCTGCCAATTTTCTATGATGTTGATCCCTCTGATGTACGAAAGCAAACAGGGAGTTTTAAAAGAGCCTTTGCAAATCATGAAGAAAGGTTTACGGATGACAAAGAGAAAGTGCAGAGGTGGAGATCTGCATTAACTGAAGTGGCAAATTTCTCTGGGTGGAATTCAAAGGAATGGTATGAATCACAGCTCATTAGAGATATTGTTGAAGTTATATGGAGAAGATTGCAACCTACATCATTCAGTTATGCAGAAAATCTAGTTGGAATTTACTCAAGATTGCAGCCAGTCAATGTCCTTTTAGATGTAGGGGTGGATGACATCCGCTTCATTGGTATATGGGGAATGGGCGAGATTGGTAAGACTACTATGGTAAGAGCGGTGTATGAGAGAATTTCTCGTGAATTTCAATTCAGTTTCCTTCTTACCGATGTTAGAAACTCTGTTGAAAAAAGTGGTCTACTTAATTTACAAAAGCAACTTCTCTCTGGGATTTGGACAAAGAAGGCCACCATATCGGACCTTCATGAAGGAGCCATGATTATAAGGAGGTTGTTAGGTGACAAAAGAGTTCTTCTCGTTCTTGATGATGAGAGTTCAGGGAGTAGAGTTCTTATCACAACTAGAAATGAGCATTTGTTGATTGGACATGGAGTGGAGAGAAGATTGAAGGTCAAAGAATTAAATGATGCTGATTCTCTTCAGCTTTTTAGCCGGAAAGCATTCAAAAGAGTTTACCCTGAAGAAGATTTTCTTGATTTGTCTAAATCTGTTATAAATTATGCCAAAGGTCTTCCTTTAGCTCTCGAAGTACTGGGTTCTTTTTTGCATGGAAGGGATCTAAGTGAATGGAACAGTGCATTGAGAAAACTGGGAAGAGTTTGTAACTTGGAAATTTTTGACATACTTAAAATAAGTTACAAGGATCTAGATCCTGAAGAGAAGAAAATATTCCTAGACATTGCATGTTTCTTTAATGGACAGGACAAAGATCGAGTAACAAAAGCACTAACCAGTTGCGATTTCTCTGCAATTATTGGAATAAAAGTCCTCATTGAAAGATCCCTCCTAACTCTTTCAGATGGAAGACTATGGATGCATGATTTGCTCAGAGAAATGTGTAGCGAAATTGTCCGCCTGGAATCTCCTAATGAGCCGGGCAGGTGCAGTAGGTTGTGGCTTCTTGAAGACGTCAAACATGTTTTAACCAAAAATACTGGAACTGAAGCAATAGAAGGCATATTTGTGGACTCAACCGAGTTAGGAGTAGATGCGGATATCAAGAATAGGAACCTGCCTAAGGGACTTGAATATCTTCCCAATAGTTTACGGATTCTTGATTGGACGAGGTATCCGTTAAAATCTTTGCCATCACATTTCAACCCTCAGAAGCTACTCGAACTAAGCTTGTCTCATAGTTGTATTAAACATTTTCGGATAGGAACAGAGCCTTTACACAATTTGAAAACCATTAATCTGAGTCACTCCCTGAATCTTGTCAACACCCCAAACTTTAAAGGTATGCCATATCTTGAGCTTTTGTTTCTAGAAGGTTGTACAAGATTATATAAGGTTGACCCAGGAATTGAAGTGCTTGAAAGACTCTGTATGCTGAACTTGAAAGATTGCAAGAATCTTGTGCATTTTTCAAGCAGTGTATGTGGCTTAAAATCTCTCAAAGTTCTTAATCTTTCTGGTTGCTCAAAGCTTAAAAAAATACCGAATGACATGGGTCATTTAGAGAGTTTGGAGGAGCTTCATGTGAATGGCACTGGCATAAGAGAACTACCTTCCTCTATTGGAATGCTTGAAAGACTTCCTCTGCTGAAAATGGAAGATTGCAAAGATCTGGTGTGTCTTCTGAGCAGTGTAGGTGGCTTAAAATCTGTCAAATATCTCAATATTTCTGGTTGCTCAAAGCTTGACAAATTGCCAGAGGAGTTGGGCCATATAGAGTGTTTGGTACAGGTTGATGTGAGTGGAACTTCTATACGAGAACTACCTTGCTCTATTGGCATGCTTGAAGGACTTGTTTCAATGTCCTTGAGAGATTGCAAATATCTTGTGTGTCTTCCAAGCAGTATGGGTGGCTTAAAATCTCTAAAAGATCTCAATCTTTCTGGTTGCTCAAAGCTTGACAAATTGCCAGATGAGTTGGGTCATGTTGCCTGTTTGGAGAAGCTTGATGTGAGTGGAAGTGGCATAAGAGAACTGCCCTCCTCTGTTGGTCTTTTGAAAAACCTCAAAGAATTCTCTCTTGCTGGATGTAAAGCAGCGTCACCTAAATCATGGAATATGATGTTCAACCCCTCTCAGTTATTACGAAAAAGAAGTCACATTCCGGCAGGATTGTTGTTGCCTTGTTTGCATTCATTAACCAAACTGGATCTAAGTGATTGCAATTTTTCTGAATTGCCCAGTGATTTTGGATGCTTGTCTTCATTAAGAGAATTAGATCTCAGCAGAAATCAATTCATTAGACTACCCGAGAGCATCGGCCAACTCTCTAGACTTGAAGGACTTGAGTTGAATTGGTGCGGCAAACTTCGAACATTACCAGAGCTTCCATCTGATATATATGTAATCGCTGACAACTGCATTTCATTAGATACATTGGCCAATCAAATGGGACAATGCAATTCGGTGCAAAGAGGATATTTTGTTAACTGTTTCAAAATGGTGGAGAATGAAAGCTGTAAGAGTATAGCACTTCCATTGCTAACACGATGCCTTAAGAGTAAGAGTAAAGCATTTTCTGACCATAAACATTTTGAGTTTGTTGCTCCTGGAAATGAAATTCCAGGGTGGTACAGTCACCAAAGTGTGGGGTCTTCGATAACTGTAAAGCTGTATCCAGGTTGGTTTAGTAACAAGTTTATGGGATTCGCCGCCTCTGTCGTTTTTAGACTCCTCAAACCACTCACGCCTTTGGTTGGGTGGTCCATTAATTGCAAACTGATGGCCAATGGGAAAGACACTCCCAGCTCGGGTATTTTTGGGGAAAAGTATGTTCAACCTGTGTCAGATCACATTTGGTTGTTGTATATGCACCGTGGTGATGGATACTGCTTTAAAAATGAGTGGCAGGATATCTACTATCAGCTTGTATTCTCATTTCAACCCCGCTGCCCGGTTCAACAAATAATGATTGAGGAAATTGTGCAAGTGAAGAAGTGTGGGGTCCGTGTGGTATTTGAGGAAGATGCAGAGGAACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000302 GO:0003006 GO:0003674 GO:0003824 GO:0004130 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009636 GO:0009791 GO:0009845 GO:0009987 GO:0010154 GO:0010431 GO:0016209 GO:0016491 GO:0016684 GO:0016999 GO:0017001 GO:0017144 GO:0021700 GO:0022414 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0034599 GO:0042221 GO:0042737 GO:0042743 GO:0042744 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051186 GO:0051187 GO:0051716 GO:0055114 GO:0061458 GO:0070887 GO:0071695 GO:0072593 GO:0090351 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00053 ko00480 map00053 map00480

Pfam Domains

Protein Families

peroxidase

Protein Analysis

1142

Amino Acids

129.13

Weight (kDa)

6.79

Isoelectric Point (pI)

41.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	16 - 156	2.5e-37	TIR domain
TIR_2	PF13676	17 - 81	2.9e-06	TIR domain
NB-ARC	PF00931	176 - 314	5e-11	NB-ARC domain
WHD_ROQ1	PF23282	383 - 451	1.1e-15	Disease resistance protein Roq1-like, winged-helix domain
LRR_14	PF23598	602 - 685	1.6e-11	Leucine-rich repeat region
LRR_13	PF23286	626 - 712	7.7e-07	Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_14	PF23598	678 - 777	2.7e-13	Leucine-rich repeat region
LRR_13	PF23286	697 - 783	5.2e-08	Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_14	PF23598	775 - 824	1.7e-06	Leucine-rich repeat region
LRR_13	PF23286	784 - 956	1.3e-06	Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_14	PF23598	859 - 919	2.6e-07	Leucine-rich repeat region
LRR_8	PF13855	861 - 916	3.7e-06	Leucine rich repeat
C-JID	PF20160	999 - 1140	9.9e-16	C-JID domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0009416)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32320
fragaria_vesca	FvH4_2g29080 FvH4_2g29080 FvH4_2g29080 FvH4_2g29080 FvH4_2g29080
malus_domestica	MD15G1125400.v1.1
prunus_persica	Prupe.1G481000_v2.0.a1
pyrus_communis	pycom08g12640
rosa_chinensis	RchiOBHm_Chr6g0297961
rosa_laevigata	RLG00000011548
rosa_multiflora	Rmu_sc0007302.1_g000002 Rmu_sc0034417.1_g000001
rosa_roxburghii	Rroxscaffold_7G00170050 Rroxscaffold_7G00178890
rosa_rugosa	Rorug06G0277100 Rorug06G0277200
rosa_samantha	Rh6AG387700 Rh6CG401900 Rh6DG388200
rosa_wichuraiana	Rw6G033770 Rw6G033830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	755, 986
AarI	CACCTGC	1 cut(s)	1362
AatII	GACGTC	1 cut(s)	1404
Acc36I	ACCTGC	2 cut(s)	1362, 1512
AccB7I	CCANNNNNTGG	1 cut(s)	3034
AccBSI	CCGCTC	1 cut(s)	590
AccI	GTMKAC	1 cut(s)	670
AciI	CCGC	7 cut(s)	535, 590, 1345, 1484, 2748, 3099, 3334
AclWI	GGATC	7 cut(s)	44, 230, 1056, 1136, 1143, 1266, 2604
AcoI	YGGCCR	3 cut(s)	2707, 2826, 3171
AcsI	RAATTY	8 cut(s)	358, 373, 477, 603, 614, 1104, 2459, 3006
AcuI	CTGAAG	5 cut(s)	369, 896, 972, 1167, 1455
AcyI	GRCGYC	1 cut(s)	1401
AfaI	GTAC	6 cut(s)	33, 249, 1023, 1768, 2175, 3020
AfiI	CCNNNNNNNGG	5 cut(s)	1510, 3034, 3143, 3197, 3340
AflII	CTTAAG	1 cut(s)	2942
AflIII	ACRYGT	1 cut(s)	1408
AhlI	ACTAGT	1 cut(s)	172
AjnI	CCWGG	5 cut(s)	1347, 1789, 2995, 3010, 3064
AjuI	GAANNNNNNNTTGG	2 cut(s)	456, 488
AleI	CACNNNNGTG	2 cut(s)	3030, 3264
Alw26I	GTCTC	1 cut(s)	1626
AlwI	GGATC	7 cut(s)	44, 230, 1056, 1136, 1143, 1266, 2604
Ama87I	CYCGRG	2 cut(s)	2696, 3196
AoxI	GGCC	5 cut(s)	717, 2155, 2707, 2826, 3171
ApeKI	GCWGC	5 cut(s)	95, 214, 493, 2483, 3336
ApoI	RAATTY	8 cut(s)	358, 373, 477, 603, 614, 1104, 2459, 3006
ArsI	GACNNNNNNTTYG	2 cut(s)	2527, 2559
AseI	ATTAAT	2 cut(s)	1683, 3156
Asp700I	GAANNNNTTC	5 cut(s)	932, 960, 1160, 1524, 2025
AspS9I	GGNCC	4 cut(s)	730, 2155, 3150, 3391
AsuC2I	CCSGG	2 cut(s)	1368, 3341
AsuHPI	GGTGA	4 cut(s)	782, 2481, 3017, 3278
AsuII	TTCGAA	1 cut(s)	2758
AvaI	CYCGRG	2 cut(s)	2696, 3196
AvaII	GGWCC	3 cut(s)	730, 3150, 3391
AxyI	CCTNAGG	1 cut(s)	1509
BalI	TGGCCA	2 cut(s)	2828, 3173
BauI	CACGAG	1 cut(s)	609
BbsI	GAAGAC	7 cut(s)	995, 1303, 1404, 2060, 2273, 2640, 3033
BbvI	GCAGC	5 cut(s)	82, 201, 505, 2495, 3323
BccI	CCATC	5 cut(s)	1286, 1588, 2785, 3163, 3263
BcgI	CGANNNNNNTGC	2 cut(s)	1220, 1254
BciT130I	CCWGG	5 cut(s)	1349, 1791, 2997, 3012, 3066
BciVI	GTATCC	3 cut(s)	1572, 3072, 3266
BcnI	CCSGG	2 cut(s)	1368, 3341
BcoDI	GTCTC	1 cut(s)	1626
BcuI	ACTAGT	1 cut(s)	172
BfaI	CTAG	7 cut(s)	173, 470, 834, 1139, 1166, 1757, 2718
BfrI	CTTAAG	1 cut(s)	2942
BfuAI	ACCTGC	2 cut(s)	1362, 1512
BfuI	GTATCC	3 cut(s)	1572, 3072, 3266
BglII	AGATCT	4 cut(s)	335, 2056, 2317, 2665
BisI	GCNGC	7 cut(s)	96, 215, 494, 2484, 2749, 3099, 3337
BlsI	GCNGC	7 cut(s)	97, 216, 495, 2485, 2750, 3100, 3338
BmcAI	AGTACT	1 cut(s)	1023
Bme1390I	CCNGG	7 cut(s)	1349, 1368, 1791, 2997, 3012, 3066, 3341
Bme18I	GGWCC	3 cut(s)	730, 3150, 3391
BmeT110I	CYCGRG	2 cut(s)	2696, 3196
BmgT120I	GGNCC	4 cut(s)	730, 2155, 3150, 3391
BmiI	GGNNCC	3 cut(s)	745, 1502, 3392
BmrFI	CCNGG	7 cut(s)	1349, 1368, 1791, 2997, 3012, 3066, 3341
BmrI	ACTGGG	3 cut(s)	1034, 1091, 2622
BmsI	GCATC	8 cut(s)	155, 889, 1296, 1471, 2630, 2712, 2927, 3403
BmuI	ACTGGG	3 cut(s)	1034, 1091, 2622
BoxI	GACNNNNGTC	1 cut(s)	1941
BpiI	GAAGAC	7 cut(s)	995, 1303, 1404, 2060, 2273, 2640, 3033
BplI	GAGNNNNNCTC	6 cut(s)	103, 135, 592, 624, 771, 803
BpmI	CTGGAG	1 cut(s)	66
Bpu14I	TTCGAA	1 cut(s)	2758
BpuEI	CTTGAG	4 cut(s)	469, 1763, 2275, 2753
BpuMI	CCSGG	2 cut(s)	1368, 3341
BsaBI	GATNNNNATC	3 cut(s)	234, 1140, 2322
BsaHI	GRCGYC	1 cut(s)	1401
BsaJI	CCNNGG	3 cut(s)	1789, 3011, 3262
Bsc4I	CCNNNNNNNGG	5 cut(s)	1510, 3034, 3143, 3197, 3340
Bse1I	ACTGG	8 cut(s)	497, 1029, 1086, 1224, 1432, 1987, 2598, 2628
Bse21I	CCTNAGG	1 cut(s)	1509
Bse3DI	GCAATG	2 cut(s)	1170, 2924
Bse8I	GATNNNNATC	3 cut(s)	234, 1140, 2322
BseBI	CCWGG	5 cut(s)	1349, 1791, 2997, 3012, 3066
BseDI	CCNNGG	3 cut(s)	1789, 3011, 3262
BseGI	GGATG	7 cut(s)	172, 313, 531, 532, 1311, 2480, 2645
BseJI	GATNNNNATC	3 cut(s)	234, 1140, 2322
BseLI	CCNNNNNNNGG	5 cut(s)	1510, 3034, 3143, 3197, 3340
BseMI	GCAATG	2 cut(s)	1170, 2924
BseMII	CTCAG	6 cut(s)	1333, 1610, 1679, 2063, 2537, 2683
BseNI	ACTGG	8 cut(s)	497, 1029, 1086, 1224, 1432, 1987, 2598, 2628
BseRI	GAGGAG	4 cut(s)	1976, 2162, 2419, 3110
BseXI	GCAGC	5 cut(s)	82, 201, 505, 2495, 3323
BseYI	CCCAGC	1 cut(s)	3191
BsgI	GTGCAG	2 cut(s)	344, 1396
BshFI	GGCC	5 cut(s)	719, 2157, 2709, 2828, 3173
BsiHKCI	CYCGRG	2 cut(s)	2696, 3196
BsiSI	CCGG	4 cut(s)	925, 1367, 2552, 3341
BslFI	GGGAC	2 cut(s)	1527, 2853
BslI	CCNNNNNNNGG	5 cut(s)	1510, 3034, 3143, 3197, 3340
BsmAI	GTCTC	1 cut(s)	1626
BsmFI	GGGAC	2 cut(s)	1527, 2853
BsmI	GAATGC	4 cut(s)	194, 932, 2019, 2578
BsnI	GGCC	5 cut(s)	719, 2157, 2709, 2828, 3173
BsoBI	CYCGRG	2 cut(s)	2696, 3196
Bsp119I	TTCGAA	1 cut(s)	2758
Bsp1407I	TGTACA	1 cut(s)	1766
BspACI	CCGC	7 cut(s)	535, 590, 1345, 1484, 2748, 3099, 3334
BspANI	GGCC	5 cut(s)	719, 2157, 2709, 2828, 3173
BspCNI	CTCAG	6 cut(s)	1332, 1609, 1680, 2064, 2536, 2682
BspHI	TCATGA	2 cut(s)	289, 736
BspLI	GGNNCC	3 cut(s)	745, 1502, 3392
BspMI	ACCTGC	2 cut(s)	1362, 1512
BspPI	GGATC	7 cut(s)	44, 230, 1056, 1136, 1143, 1266, 2604
BspT104I	TTCGAA	1 cut(s)	2758
BspTI	CTTAAG	1 cut(s)	2942
BsrBI	CCGCTC	1 cut(s)	590
BsrDI	GCAATG	2 cut(s)	1170, 2924
BsrGI	TGTACA	1 cut(s)	1766
BsrI	ACTGG	8 cut(s)	497, 1029, 1086, 1224, 1432, 1987, 2598, 2628
BssECI	CCNNGG	3 cut(s)	1789, 3011, 3262
BssNI	GRCGYC	1 cut(s)	1401
BssSI	CACGAG	1 cut(s)	609
Bst2BI	CACGAG	1 cut(s)	609
Bst2UI	CCWGG	5 cut(s)	1349, 1791, 2997, 3012, 3066
Bst4CI	ACNGT	6 cut(s)	211, 1067, 2879, 3023, 3052, 3263
Bst6I	CTCTTC	3 cut(s)	915, 1081, 1143
BstACI	GRCGYC	1 cut(s)	1401
BstAFI	CTTAAG	1 cut(s)	2942
BstAPI	GCANNNNNTGC	2 cut(s)	92, 1315
BstAUI	TGTACA	1 cut(s)	1766
BstBI	TTCGAA	1 cut(s)	2758
BstC8I	GCNNGC	1 cut(s)	2228
BstDSI	CCRYGG	1 cut(s)	3262
BstENI	CCTNNNNNAGG	1 cut(s)	1508
BstF5I	GGATG	7 cut(s)	172, 313, 531, 532, 1311, 2480, 2645
BstMAI	GTCTC	1 cut(s)	1626
BstMWI	GCNNNNNNNGC	4 cut(s)	92, 1315, 2223, 2575
BstNI	CCWGG	5 cut(s)	1349, 1791, 2997, 3012, 3066
BstNSI	RCATGY	3 cut(s)	1179, 1412, 2230
BstPAI	GACNNNNGTC	1 cut(s)	1941
BstSCI	CCNGG	7 cut(s)	1347, 1366, 1789, 2995, 3010, 3064, 3339
BstV1I	GCAGC	5 cut(s)	82, 201, 505, 2495, 3323
BstV2I	GAAGAC	7 cut(s)	995, 1303, 1404, 2060, 2273, 2640, 3033
BstX2I	RGATCY	9 cut(s)	335, 1048, 1135, 1141, 1271, 2056, 2317, 2596, 2665
BstXI	CCANNNNNNTGG	1 cut(s)	2836
BstYI	RGATCY	9 cut(s)	335, 1048, 1135, 1141, 1271, 2056, 2317, 2596, 2665
Bsu36I	CCTNAGG	1 cut(s)	1509
BsuI	GTATCC	3 cut(s)	1572, 3072, 3266
BsuRI	GGCC	5 cut(s)	719, 2157, 2709, 2828, 3173
BtgI	CCRYGG	1 cut(s)	3262
BtsCI	GGATG	7 cut(s)	172, 313, 531, 532, 1311, 2480, 2645
BtsI	GCAGTG	2 cut(s)	1870, 2083
BtsIMutI	CAGTG	5 cut(s)	1072, 1870, 1980, 2083, 2635
BveI	ACCTGC	2 cut(s)	1362, 1512
Cac8I	GCNNGC	1 cut(s)	2228
CciI	TCATGA	2 cut(s)	289, 736
Cfr13I	GGNCC	4 cut(s)	730, 2155, 3150, 3391
CseI	GACGC	1 cut(s)	2475
Csp6I	GTAC	6 cut(s)	32, 248, 1022, 1767, 2174, 3019
CviQI	GTAC	6 cut(s)	32, 248, 1022, 1767, 2174, 3019
DraI	TTTAAA	3 cut(s)	271, 1726, 3283
EaeI	YGGCCR	3 cut(s)	2707, 2826, 3171
Eam1104I	CTCTTC	3 cut(s)	915, 1081, 1143
EarI	CTCTTC	3 cut(s)	915, 1081, 1143
EciI	GGCGGA	1 cut(s)	1334
Eco32I	GATATC	2 cut(s)	1489, 3301
Eco47I	GGWCC	3 cut(s)	730, 3150, 3391
Eco57I	CTGAAG	5 cut(s)	369, 896, 972, 1167, 1455
Eco81I	CCTNAGG	1 cut(s)	1509
Eco88I	CYCGRG	2 cut(s)	2696, 3196
EcoNI	CCTNNNNNAGG	1 cut(s)	1508
EcoRI	GAATTC	2 cut(s)	373, 2459
EcoRII	CCWGG	5 cut(s)	1347, 1789, 2995, 3010, 3064
EcoRV	GATATC	2 cut(s)	1489, 3301
EcoT22I	ATGCAT	3 cut(s)	148, 194, 1311
FalI	AAGNNNNNCTT	2 cut(s)	948, 980
FaqI	GGGAC	2 cut(s)	1527, 2853
FauI	CCCGC	1 cut(s)	3341
FblI	GTMKAC	1 cut(s)	670
Fnu4HI	GCNGC	7 cut(s)	96, 215, 494, 2484, 2749, 3099, 3337
FokI	GGATG	7 cut(s)	179, 320, 518, 539, 1318, 2487, 2652
Fsp4HI	GCNGC	7 cut(s)	96, 215, 494, 2484, 2749, 3099, 3337
FspBI	CTAG	7 cut(s)	173, 470, 834, 1139, 1166, 1757, 2718
GluI	GCNGC	7 cut(s)	96, 215, 494, 2484, 2749, 3099, 3337
GsaI	CCCAGC	1 cut(s)	3195
GsuI	CTGGAG	1 cut(s)	66
HaeIII	GGCC	5 cut(s)	719, 2157, 2709, 2828, 3173
HapII	CCGG	4 cut(s)	925, 1367, 2552, 3341
HgaI	GACGC	1 cut(s)	2475
Hin1I	GRCGYC	1 cut(s)	1401
HincII	GTYRAC	3 cut(s)	1711, 1786, 2875
HindII	GTYRAC	3 cut(s)	1711, 1786, 2875
HindIII	AAGCTT	5 cut(s)	1615, 1916, 2129, 2342, 2390
HpaI	GTTAAC	1 cut(s)	2875
HpaII	CCGG	4 cut(s)	925, 1367, 2552, 3341
HphI	GGTGA	4 cut(s)	782, 2481, 3017, 3278
Hpy166II	GTNNAC	8 cut(s)	303, 671, 946, 1459, 1538, 1711, 1786, 2875
Hpy8I	GTNNAC	8 cut(s)	303, 671, 946, 1459, 1538, 1711, 1786, 2875
HpyCH4III	ACNGT	6 cut(s)	211, 1067, 2879, 3023, 3052, 3263
HpyCH4IV	ACGT	1 cut(s)	1401
HpyF10VI	GCNNNNNNNGC	4 cut(s)	92, 1315, 2223, 2575
HpySE526I	ACGT	1 cut(s)	1401
Hsp92I	GRCGYC	1 cut(s)	1401
KspAI	GTTAAC	1 cut(s)	2875
LmnI	GCTCC	3 cut(s)	743, 1963, 2998
Lsp1109I	GCAGC	5 cut(s)	82, 201, 505, 2495, 3323
LweI	GCATC	8 cut(s)	155, 889, 1296, 1471, 2630, 2712, 2927, 3403
MaeI	CTAG	7 cut(s)	173, 470, 834, 1139, 1166, 1757, 2718
MaeII	ACGT	1 cut(s)	1401
MaeIII	GTNAC	9 cut(s)	770, 1094, 1127, 1207, 1691, 2487, 2543, 3023, 3077
MbiI	CCGCTC	1 cut(s)	590
MfeI	CAATTG	1 cut(s)	99
MflI	RGATCY	9 cut(s)	335, 1048, 1135, 1141, 1271, 2056, 2317, 2596, 2665
MlsI	TGGCCA	2 cut(s)	2828, 3173
MluNI	TGGCCA	2 cut(s)	2828, 3173
MlyI	GAGTC	4 cut(s)	1454, 1699, 1806, 3111
MmeI	TCCRAC	1 cut(s)	454
Mox20I	TGGCCA	2 cut(s)	2828, 3173
Mph1103I	ATGCAT	3 cut(s)	148, 194, 1311
MroXI	GAANNNNTTC	5 cut(s)	932, 960, 1160, 1524, 2025
MscI	TGGCCA	2 cut(s)	2828, 3173
MslI	CAYNNNNRTG	5 cut(s)	154, 1454, 1974, 3030, 3264
Msp20I	TGGCCA	2 cut(s)	2828, 3173
MspA1I	CMGCKG	1 cut(s)	3336
MspCI	CTTAAG	1 cut(s)	2942
MspI	CCGG	4 cut(s)	925, 1367, 2552, 3341
MspR9I	CCNGG	7 cut(s)	1349, 1368, 1791, 2997, 3012, 3066, 3341
MunI	CAATTG	1 cut(s)	99
Mva1269I	GAATGC	4 cut(s)	194, 932, 2019, 2578
MvaI	CCWGG	5 cut(s)	1349, 1791, 2997, 3012, 3066
MwoI	GCNNNNNNNGC	4 cut(s)	92, 1315, 2223, 2575
NciI	CCSGG	2 cut(s)	1368, 3341
NlaIV	GGNNCC	3 cut(s)	745, 1502, 3392
NmeAIII	GCCGAG	1 cut(s)	40
NmuCI	GTSAC	5 cut(s)	770, 1691, 2487, 2543, 3023
NsiI	ATGCAT	3 cut(s)	148, 194, 1311
NspI	RCATGY	3 cut(s)	1179, 1412, 2230
NspV	TTCGAA	1 cut(s)	2758
OliI	CACNNNNGTG	2 cut(s)	3030, 3264
PaeI	GCATGC	1 cut(s)	2230
PagI	TCATGA	2 cut(s)	289, 736
PaqCI	CACCTGC	1 cut(s)	1362
PciI	ACATGT	1 cut(s)	1408
PcsI	WCGNNNNNNNCGW	1 cut(s)	1562
PctI	GAATGC	4 cut(s)	194, 932, 2019, 2578
PdmI	GAANNNNTTC	5 cut(s)	932, 960, 1160, 1524, 2025
PfeI	GAWTC	8 cut(s)	107, 392, 905, 1352, 1543, 1702, 1843, 3093
PflMI	CCANNNNNTGG	1 cut(s)	3034
PfoI	TCCNGGA	1 cut(s)	2995
PkrI	GCNGC	7 cut(s)	97, 216, 495, 2485, 2750, 3100, 3338
PleI	GAGTC	4 cut(s)	1454, 1698, 1806, 3111
PpsI	GAGTC	4 cut(s)	1454, 1698, 1806, 3111
PscI	ACATGT	1 cut(s)	1408
PshAI	GACNNNNGTC	1 cut(s)	1941
PshBI	ATTAAT	2 cut(s)	1683, 3156
PsiI	TTATAA	2 cut(s)	755, 986
Psp6I	CCWGG	5 cut(s)	1347, 1789, 2995, 3010, 3064
PspFI	CCCAGC	1 cut(s)	3191
PspGI	CCWGG	5 cut(s)	1347, 1789, 2995, 3010, 3064
PspN4I	GGNNCC	3 cut(s)	745, 1502, 3392
PspPI	GGNCC	4 cut(s)	730, 2155, 3150, 3391
PsuI	RGATCY	9 cut(s)	335, 1048, 1135, 1141, 1271, 2056, 2317, 2596, 2665
RsaI	GTAC	6 cut(s)	33, 249, 1023, 1768, 2175, 3020
RsaNI	GTAC	6 cut(s)	32, 248, 1022, 1767, 2174, 3019
RseI	CAYNNNNRTG	5 cut(s)	154, 1454, 1974, 3030, 3264
SatI	GCNGC	7 cut(s)	96, 215, 494, 2484, 2749, 3099, 3337
Sau96I	GGNCC	4 cut(s)	730, 2155, 3150, 3391
ScaI	AGTACT	1 cut(s)	1023
SchI	GAGTC	4 cut(s)	1454, 1699, 1806, 3111
ScrFI	CCNGG	7 cut(s)	1349, 1368, 1791, 2997, 3012, 3066, 3341
SfaNI	GCATC	8 cut(s)	155, 889, 1296, 1471, 2630, 2712, 2927, 3403
SfuI	TTCGAA	1 cut(s)	2758
SinI	GGWCC	3 cut(s)	730, 3150, 3391
SmiMI	CAYNNNNRTG	5 cut(s)	154, 1454, 1974, 3030, 3264
SmlI	CTYRAG	5 cut(s)	484, 1742, 2254, 2732, 2942
SmoI	CTYRAG	5 cut(s)	484, 1742, 2254, 2732, 2942
SpeI	ACTAGT	1 cut(s)	172
SphI	GCATGC	1 cut(s)	2230
SsiI	CCGC	7 cut(s)	535, 590, 1345, 1484, 2748, 3099, 3334
SspI	AATATT	3 cut(s)	140, 1161, 2113
SspMI	CTAG	7 cut(s)	173, 470, 834, 1139, 1166, 1757, 2718
StyD4I	CCNGG	7 cut(s)	1347, 1366, 1789, 2995, 3010, 3064, 3339
TaaI	ACNGT	6 cut(s)	211, 1067, 2879, 3023, 3052, 3263
TaiI	ACGT	1 cut(s)	1404
TaqI	TCGA	6 cut(s)	110, 1017, 1204, 1608, 2758, 3044
TatI	WGTACW	2 cut(s)	1021, 1766
TauI	GCSGC	2 cut(s)	2751, 3101
TfiI	GAWTC	8 cut(s)	107, 392, 905, 1352, 1543, 1702, 1843, 3093
TscAI	CASTG	5 cut(s)	1072, 1870, 1987, 2083, 2635
TseFI	GTSAC	5 cut(s)	770, 1691, 2487, 2543, 3023
TseI	GCWGC	5 cut(s)	95, 214, 493, 2483, 3336
Tsp45I	GTSAC	5 cut(s)	770, 1691, 2487, 2543, 3023
TspGWI	ACGGA	5 cut(s)	49, 320, 1554, 1555, 3383
TspRI	CASTG	5 cut(s)	1072, 1870, 1987, 2083, 2635
Van91I	CCANNNNNTGG	1 cut(s)	3034
Vha464I	CTTAAG	1 cut(s)	2942
VpaK11BI	GGWCC	3 cut(s)	730, 3150, 3391
VspI	ATTAAT	2 cut(s)	1683, 3156
XagI	CCTNNNNNAGG	1 cut(s)	1508
XapI	RAATTY	8 cut(s)	358, 373, 477, 603, 614, 1104, 2459, 3006
XbaI	TCTAGA	3 cut(s)	1138, 1756, 2717
XceI	RCATGY	3 cut(s)	1179, 1412, 2230
XmiI	GTMKAC	1 cut(s)	670
XmnI	GAANNNNTTC	5 cut(s)	932, 960, 1160, 1524, 2025
XspI	CTAG	7 cut(s)	173, 470, 834, 1139, 1166, 1757, 2718
ZraI	GACGTC	1 cut(s)	1402
ZrmI	AGTACT	1 cut(s)	1023
Zsp2I	ATGCAT	3 cut(s)	148, 194, 1311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.