RchiOBHm_Chr6g0297961

Belongs to the peroxidase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0009416
Physical Location & Seq
Forward (+)
59547794 .. 59550723
2930 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26745

Sequence Viewer

Length: 990 bp
ATGGCATCATCATCAACTACCTCCACCGCCGTCTCCCTCCTCTGCTCCGCAACCTCTTCCTCCAGATTTCCATTCAGTACAACTCTTCCCGCCAAATCCTCATCAACGCTCTATTTTCGCGCCAACTCTCTCCCCGCCACCCATGCAGCTTCTTCTTCTTCTTCAGGTAAAGATGAGATTTTGGGGAGAAGAGGACTGGTGTTCACACTCACAGCCACACTGCCACTGCTTCTTCCTTTCTCGGAATCCATGGAGGCCTTCACAGCCAAGGCGGTGGAGCCAGATACAAGTATATATGAGGTTATGAAGGAAGAGATTAGGAAAGTTGTGTCTAAGGGCAAAGCTGCTGGTGTGCTTCGTTTTGTATTTCATGATGCAGGGACCTTTCAATTGGATGACAATTCGGGTGGGATGAATGGTTCAGTCATATATGAACTCGATAGACCCGAAAATAAAGGTCTTAAAACTCCTTTTAAGATTTTAGAGATAGCAAAGACTGAGGTGGATGCAGTACAACCAGTATCGTGGGCAGACATGATTGCTGTGGCTGGAGCTGAAGCAGTTTCGGTATGTGGAGGTCCGACTATCCCAGTTGCATTGGGCAGACTAGACTCAAAGGAGCCTGATCCTGAAGGAAAACTTCCTGAAGAAACTCTTGATGCATATGGTCTAAAGCAAAGCTTTCGAGCAAAAGGCTTATCAACTCAAGAACTTGTTGCTCTGTCAGGTGCCCATACTCTGGGAAATAAAGGTTTTGGAAGCCCGACTGTTTTTGACAATTCATACTTCAAAGTTCTTCTTGAGGAATCTGTGTCCTCAGGTAGTATGTCAAGCATGACTGGACTTCCTTCAGATCGCGCACTTCCCAAGGATGATGAATGCTTAAGATGGATAAAAAAGTATGCTGACAATGAGAACAGTTTCTTTGAAGATTTTCAAAATGCTTACATCAAGTTGGTCAATTCAGGAGCAAGGTGGAAGAGCTTGTGA

Protein Analysis

329

Amino Acids

35.27

Weight (kDa)

5.44

Isoelectric Point (pI)

46.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 102 - 304 6.8e-42 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 728
AccB7I CCANNNNNTGG 1 cut(s) 739
AccII CGCG 2 cut(s) 120, 858
AciI CCGC 5 cut(s) 27, 48, 90, 135, 272
AclWI GGATC 1 cut(s) 620
AcuI CTGAAG 5 cut(s) 147, 576, 651, 666, 834
AfaI GTAC 2 cut(s) 79, 513
AfiI CCNNNNNNNGG 1 cut(s) 739
AflII CTTAAG 1 cut(s) 883
AgsI TTSAA 4 cut(s) 389, 790, 929, 938
AloI GAACNNNNNNTCC 2 cut(s) 403, 435
AluBI AGCT 5 cut(s) 149, 344, 554, 681, 984
AluI AGCT 5 cut(s) 149, 344, 554, 681, 984
Alw26I GTCTC 1 cut(s) 37
AlwI GGATC 1 cut(s) 620
AoxI GGCC 1 cut(s) 255
ApeKI GCWGC 2 cut(s) 146, 344
Asp700I GAANNNNTTC 2 cut(s) 920, 933
AspLEI GCGC 2 cut(s) 122, 860
AspS9I GGNCC 2 cut(s) 381, 578
AvaII GGWCC 2 cut(s) 381, 578
AxyI CCTNAGG 1 cut(s) 817
BaeGI GKGCMC 1 cut(s) 733
BanI GGYRCC 1 cut(s) 728
BbvI GCAGC 2 cut(s) 158, 331
BccI CCATC 1 cut(s) 882
BceAI ACGGC 1 cut(s) 14
BcgI CGANNNNNNTGC 2 cut(s) 665, 699
BcoDI GTCTC 1 cut(s) 37
BfaI CTAG 1 cut(s) 608
BfrI CTTAAG 1 cut(s) 883
BisI GCNGC 2 cut(s) 147, 345
BlsI GCNGC 2 cut(s) 148, 346
Bme18I GGWCC 2 cut(s) 381, 578
BmgT120I GGNCC 2 cut(s) 381, 578
BmiI GGNNCC 4 cut(s) 279, 382, 621, 730
BmrI ACTGGG 1 cut(s) 584
BmsI GCATC 4 cut(s) 14, 364, 496, 649
BmuI ACTGGG 1 cut(s) 584
BpmI CTGGAG 2 cut(s) 46, 570
BpuEI CTTGAG 2 cut(s) 690, 821
BsaJI CCNNGG 3 cut(s) 249, 267, 867
Bsc4I CCNNNNNNNGG 1 cut(s) 739
Bse1I ACTGG 4 cut(s) 201, 518, 590, 844
Bse21I CCTNAGG 1 cut(s) 817
BseDI CCNNGG 3 cut(s) 249, 267, 867
BseGI GGATG 4 cut(s) 400, 417, 511, 877
BseLI CCNNNNNNNGG 1 cut(s) 739
BseMII CTCAG 2 cut(s) 489, 831
BseNI ACTGG 4 cut(s) 201, 518, 590, 844
BseRI GAGGAG 1 cut(s) 29
BseSI GKGCMC 1 cut(s) 733
BseXI GCAGC 2 cut(s) 158, 331
Bsh1236I CGCG 2 cut(s) 120, 858
BshFI GGCC 1 cut(s) 257
BshNI GGYRCC 1 cut(s) 728
BslFI GGGAC 1 cut(s) 394
BslI CCNNNNNNNGG 1 cut(s) 739
BsmAI GTCTC 1 cut(s) 37
BsmBI CGTCTC 1 cut(s) 37
BsmFI GGGAC 1 cut(s) 394
BsmI GAATGC 1 cut(s) 884
BsnI GGCC 1 cut(s) 257
Bsp1286I GDGCHC 1 cut(s) 733
Bsp143I GATC 2 cut(s) 625, 853
Bsp19I CCATGG 1 cut(s) 249
BspACI CCGC 5 cut(s) 27, 48, 90, 135, 272
BspANI GGCC 1 cut(s) 257
BspCNI CTCAG 2 cut(s) 490, 830
BspFNI CGCG 2 cut(s) 120, 858
BspHI TCATGA 1 cut(s) 370
BspLI GGNNCC 4 cut(s) 279, 382, 621, 730
BspPI GGATC 1 cut(s) 620
BspQI GCTCTTC 1 cut(s) 974
BspT107I GGYRCC 1 cut(s) 728
BspTI CTTAAG 1 cut(s) 883
BsrI ACTGG 4 cut(s) 201, 518, 590, 844
BssECI CCNNGG 3 cut(s) 249, 267, 867
BssMI GATC 2 cut(s) 625, 853
BssT1I CCWWGG 3 cut(s) 249, 267, 867
Bst4CI ACNGT 2 cut(s) 769, 920
Bst6I CTCTTC 5 cut(s) 61, 90, 184, 306, 974
BstAFI CTTAAG 1 cut(s) 883
BstDEI CTNAG 3 cut(s) 333, 498, 817
BstDSI CCRYGG 1 cut(s) 249
BstF5I GGATG 4 cut(s) 400, 417, 511, 877
BstFNI CGCG 2 cut(s) 120, 858
BstHHI GCGC 2 cut(s) 122, 860
BstKTI GATC 2 cut(s) 628, 856
BstMAI GTCTC 1 cut(s) 37
BstMBI GATC 2 cut(s) 625, 853
BstMWI GCNNNNNNNGC 2 cut(s) 143, 263
BstSLI GKGCMC 1 cut(s) 733
BstUI CGCG 2 cut(s) 120, 858
BstV1I GCAGC 2 cut(s) 158, 331
BstXI CCANNNNNNTGG 2 cut(s) 274, 525
Bsu36I CCTNAGG 1 cut(s) 817
BsuRI GGCC 1 cut(s) 257
BtgI CCRYGG 1 cut(s) 249
BtsCI GGATG 4 cut(s) 400, 417, 511, 877
BtsI GCAGTG 2 cut(s) 218, 224
BtsIMutI CAGTG 2 cut(s) 218, 224
CciI TCATGA 1 cut(s) 370
CfoI GCGC 2 cut(s) 122, 860
Cfr13I GGNCC 2 cut(s) 381, 578
Csp6I GTAC 2 cut(s) 78, 512
CspCI CAANNNNNGTGG 2 cut(s) 388, 423
CviAII CATG 5 cut(s) 143, 250, 371, 535, 835
CviQI GTAC 2 cut(s) 78, 512
DdeI CTNAG 3 cut(s) 333, 498, 817
DpnI GATC 2 cut(s) 627, 855
DpnII GATC 2 cut(s) 625, 853
Eam1104I CTCTTC 5 cut(s) 61, 90, 184, 306, 974
EarI CTCTTC 5 cut(s) 61, 90, 184, 306, 974
Eco130I CCWWGG 3 cut(s) 249, 267, 867
Eco147I AGGCCT 1 cut(s) 257
Eco47I GGWCC 2 cut(s) 381, 578
Eco57I CTGAAG 5 cut(s) 147, 576, 651, 666, 834
Eco81I CCTNAGG 1 cut(s) 817
EcoO109I RGGNCCY 1 cut(s) 381
EcoT14I CCWWGG 3 cut(s) 249, 267, 867
EcoT22I ATGCAT 1 cut(s) 664
ErhI CCWWGG 3 cut(s) 249, 267, 867
Esp3I CGTCTC 1 cut(s) 37
FaeI CATG 5 cut(s) 146, 253, 374, 538, 838
FalI AAGNNNNNCTT 8 cut(s) 624, 656, 639, 671, 665, 697, 783, 815
FaqI GGGAC 1 cut(s) 394
FatI CATG 5 cut(s) 142, 249, 370, 534, 834
FauI CCCGC 2 cut(s) 97, 142
FauNDI CATATG 1 cut(s) 664
Fnu4HI GCNGC 2 cut(s) 147, 345
FokI GGATG 4 cut(s) 407, 424, 518, 884
Fsp4HI GCNGC 2 cut(s) 147, 345
FspBI CTAG 1 cut(s) 608
GlaI GCGC 2 cut(s) 121, 859
GluI GCNGC 2 cut(s) 147, 345
GsuI CTGGAG 2 cut(s) 46, 570
HaeIII GGCC 1 cut(s) 257
HhaI GCGC 2 cut(s) 122, 860
Hin1II CATG 5 cut(s) 146, 253, 374, 538, 838
Hin6I GCGC 2 cut(s) 120, 858
HinP1I GCGC 2 cut(s) 120, 858
HindIII AAGCTT 1 cut(s) 679
HinfI GANTC 3 cut(s) 245, 611, 806
Hpy166II GTNNAC 1 cut(s) 204
Hpy188I TCNGA 3 cut(s) 244, 582, 853
Hpy188III TCNNGA 8 cut(s) 63, 371, 629, 644, 656, 707, 800, 966
Hpy8I GTNNAC 1 cut(s) 204
HpyAV CCTTC 4 cut(s) 268, 301, 626, 858
HpyCH4III ACNGT 2 cut(s) 769, 920
HpyCH4V TGCA 5 cut(s) 146, 377, 509, 596, 662
HpyF10VI GCNNNNNNNGC 2 cut(s) 143, 263
HpyF3I CTNAG 3 cut(s) 333, 498, 817
Hsp92II CATG 5 cut(s) 146, 253, 374, 538, 838
HspAI GCGC 2 cut(s) 120, 858
Kzo9I GATC 2 cut(s) 625, 853
LguI GCTCTTC 1 cut(s) 974
LmnI GCTCC 5 cut(s) 50, 277, 551, 619, 968
Lsp1109I GCAGC 2 cut(s) 158, 331
LweI GCATC 4 cut(s) 14, 364, 496, 649
MaeI CTAG 1 cut(s) 608
MalI GATC 2 cut(s) 627, 855
MboI GATC 2 cut(s) 625, 853
MfeI CAATTG 1 cut(s) 389
MhlI GDGCHC 1 cut(s) 733
MluCI AATT 4 cut(s) 389, 400, 778, 961
MlyI GAGTC 1 cut(s) 605
MmeI TCCRAC 1 cut(s) 605
Mph1103I ATGCAT 1 cut(s) 664
MroXI GAANNNNTTC 2 cut(s) 920, 933
MseI TTAA 3 cut(s) 462, 474, 884
MspCI CTTAAG 1 cut(s) 883
MunI CAATTG 1 cut(s) 389
Mva1269I GAATGC 1 cut(s) 884
MvnI CGCG 2 cut(s) 120, 858
MwoI GCNNNNNNNGC 2 cut(s) 143, 263
NcoI CCATGG 1 cut(s) 249
NdeI CATATG 1 cut(s) 664
NdeII GATC 2 cut(s) 625, 853
NlaIII CATG 5 cut(s) 146, 253, 374, 538, 838
NlaIV GGNNCC 4 cut(s) 279, 382, 621, 730
NsiI ATGCAT 1 cut(s) 664
PagI TCATGA 1 cut(s) 370
PceI AGGCCT 1 cut(s) 257
PciSI GCTCTTC 1 cut(s) 974
PcsI WCGNNNNNNNCGW 1 cut(s) 444
PctI GAATGC 1 cut(s) 884
PdmI GAANNNNTTC 2 cut(s) 920, 933
PfeI GAWTC 2 cut(s) 245, 806
PflMI CCANNNNNTGG 1 cut(s) 739
PkrI GCNGC 2 cut(s) 148, 346
PleI GAGTC 1 cut(s) 605
PpsI GAGTC 1 cut(s) 605
PpuMI RGGWCCY 1 cut(s) 381
Psp5II RGGWCCY 1 cut(s) 381
PspN4I GGNNCC 4 cut(s) 279, 382, 621, 730
PspPI GGNCC 2 cut(s) 381, 578
PspPPI RGGWCCY 1 cut(s) 381
RsaI GTAC 2 cut(s) 79, 513
RsaNI GTAC 2 cut(s) 78, 512
SapI GCTCTTC 1 cut(s) 974
SaqAI TTAA 3 cut(s) 462, 474, 884
SatI GCNGC 2 cut(s) 147, 345
Sau3AI GATC 2 cut(s) 625, 853
Sau96I GGNCC 2 cut(s) 381, 578
SchI GAGTC 1 cut(s) 605
SduI GDGCHC 1 cut(s) 733
SfaNI GCATC 4 cut(s) 14, 364, 496, 649
SinI GGWCC 2 cut(s) 381, 578
SmlI CTYRAG 3 cut(s) 705, 800, 883
SmoI CTYRAG 3 cut(s) 705, 800, 883
Sse9I AATT 4 cut(s) 389, 400, 778, 961
SseBI AGGCCT 1 cut(s) 257
SsiI CCGC 5 cut(s) 27, 48, 90, 135, 272
SspMI CTAG 1 cut(s) 608
StuI AGGCCT 1 cut(s) 257
StyI CCWWGG 3 cut(s) 249, 267, 867
TaaI ACNGT 2 cut(s) 769, 920
TaqI TCGA 2 cut(s) 438, 685
TasI AATT 4 cut(s) 389, 400, 778, 961
TatI WGTACW 2 cut(s) 77, 511
TfiI GAWTC 2 cut(s) 245, 806
Tru1I TTAA 3 cut(s) 462, 474, 884
Tru9I TTAA 3 cut(s) 462, 474, 884
TscAI CASTG 2 cut(s) 225, 231
TseI GCWGC 2 cut(s) 146, 344
TspDTI ATGAA 6 cut(s) 320, 359, 428, 447, 771, 891
TspRI CASTG 2 cut(s) 225, 231
Van91I CCANNNNNTGG 1 cut(s) 739
Vha464I CTTAAG 1 cut(s) 883
VpaK11BI GGWCC 2 cut(s) 381, 578
XmnI GAANNNNTTC 2 cut(s) 920, 933
XspI CTAG 1 cut(s) 608
Zsp2I ATGCAT 1 cut(s) 664
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.