Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0009416

Physical Location & Seq

Genomic Coordinates Reverse (-)

18520133 .. 18523140

Gene Structure 3008 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00178890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGCATCATCACCAGCTACCTCCACCGCCGTCTCCCTCCTCTGCTCCGCAACCTCTTCCTCCAGATTTCCATGCAGTACAAGCCTTCCCGCCAAATCCTCTTCAACGCTCAATTTTCGCGCCAACTCTCTCCCCGCCACCCATGCAGCTTCTTCTTCTTCGTCTTCTTCGGGTAAAGATGAGATTTTGGGGAGAAGAGGACTGATATTCACACTCACAGCCACACTGCCATTGCTTCTTCCTTTCTCGGAATCCATGGAGGCCTTCACAGCCAAGGCGGTGGAGCCAGGTACAAGTGTATATGAGGTTATGAAGGATGAGATTAGGAAAGTTGTGTCTAAGGGCAAAGCTGCTGGTGTGCTTCGTTTTGTATTTCATGATGCAGGGACCTTTCAATTGGATGACAATTCGGGTGGGATGAATGGTTCAGTCATATATGAACTCGATAGACCCGAAAATAAAGGTCTTAAAACTCCTTTTAAGGCATGCATCTCTATCACTATTTTAGAGAAAGCAAAGACTGAGGTGGATGCAGTACAACCAGTATCGTGGGCAGACATGATTGCTGTGGCTGGAGCTGAAGCAGTTTCAGTATGTGGAGGTCCGACTATCCCAGTTGCATTGGGCAGACTAGACTCAAAGAAGCCTGATCCTGAAGGAAAACTTCCTGAAGAAACTCTTGATGCTTATGGTCTAAAGCAAAGCTTTCGAGCAAAAGGCTTATCAACTCAAGAACTTGTTGCTCTGTCAGGTGCCCATACTCTGGGAAATAAAGGTTTTGGAAGCCCGACTGTTTTTGACAATTCATACTTCAAAGTTCTTCTTGAGGAATCTGTGTCCTCTGGTAGCATGTCAAGCATGATTGGACTTCCTTCAGATCGCGCACTTCCCAAGGATGATGAATGCTTAAGATGGATAAAAAAGTATGCCGACAATGAGAACAGTTTCTTTGAAGATTTTGAAAAGGCTTACATCAAGTTGGTCAATTCAGGAGCAAGGTGGAAGAGCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000302 GO:0003006 GO:0003674 GO:0003824 GO:0004130 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009636 GO:0009791 GO:0009845 GO:0009987 GO:0010154 GO:0010431 GO:0016209 GO:0016491 GO:0016684 GO:0016999 GO:0017001 GO:0017144 GO:0021700 GO:0022414 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0034599 GO:0042221 GO:0042737 GO:0042743 GO:0042744 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051186 GO:0051187 GO:0051716 GO:0055114 GO:0061458 GO:0070887 GO:0071695 GO:0072593 GO:0090351 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00053 ko00480 map00053 map00480

Pfam Domains

Protein Families

peroxidase

Protein Analysis

337

Amino Acids

35.88

Weight (kDa)

6.37

Isoelectric Point (pI)

46.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	103 - 312	1.7e-39	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009416)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32320
fragaria_vesca	FvH4_2g29080 FvH4_2g29080 FvH4_2g29080 FvH4_2g29080 FvH4_2g29080
malus_domestica	MD15G1125400.v1.1
prunus_persica	Prupe.1G481000_v2.0.a1
pyrus_communis	pycom08g12640
rosa_chinensis	RchiOBHm_Chr6g0297961
rosa_laevigata	RLG00000011548
rosa_multiflora	Rmu_sc0007302.1_g000002 Rmu_sc0034417.1_g000001
rosa_roxburghii	Rroxscaffold_7G00170050 Rroxscaffold_7G00178890
rosa_rugosa	Rorug06G0277100 Rorug06G0277200
rosa_samantha	Rh6AG387700 Rh6CG401900 Rh6DG388200
rosa_wichuraiana	Rw6G033770 Rw6G033830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	752
AccB7I	CCANNNNNTGG	1 cut(s)	763
AccII	CGCG	2 cut(s)	120, 882
AciI	CCGC	5 cut(s)	27, 48, 90, 135, 278
AclWI	GGATC	1 cut(s)	644
AcuI	CTGAAG	4 cut(s)	600, 675, 690, 858
AfaI	GTAC	3 cut(s)	79, 292, 537
AfiI	CCNNNNNNNGG	1 cut(s)	763
AflII	CTTAAG	1 cut(s)	907
AgsI	TTSAA	5 cut(s)	105, 395, 814, 953, 962
AjnI	CCWGG	1 cut(s)	286
AloI	GAACNNNNNNTCC	2 cut(s)	409, 441
AluBI	AGCT	6 cut(s)	17, 149, 350, 578, 705, 1008
AluI	AGCT	6 cut(s)	17, 149, 350, 578, 705, 1008
Alw26I	GTCTC	1 cut(s)	37
AlwI	GGATC	1 cut(s)	644
AoxI	GGCC	1 cut(s)	261
ApeKI	GCWGC	2 cut(s)	146, 350
Asp700I	GAANNNNTTC	1 cut(s)	944
AspLEI	GCGC	2 cut(s)	122, 884
AspS9I	GGNCC	2 cut(s)	387, 602
AsuHPI	GGTGA	1 cut(s)	3
AvaII	GGWCC	2 cut(s)	387, 602
BaeGI	GKGCMC	1 cut(s)	757
BaeI	ACNNNNGTAYC	2 cut(s)	282, 315
BanI	GGYRCC	1 cut(s)	752
BbsI	GAAGAC	1 cut(s)	156
BbvI	GCAGC	2 cut(s)	158, 337
BccI	CCATC	1 cut(s)	906
BceAI	ACGGC	1 cut(s)	14
BcgI	CGANNNNNNTGC	2 cut(s)	689, 723
BciT130I	CCWGG	1 cut(s)	288
BcoDI	GTCTC	1 cut(s)	37
BfaI	CTAG	1 cut(s)	632
BfrI	CTTAAG	1 cut(s)	907
BisI	GCNGC	2 cut(s)	147, 351
BlsI	GCNGC	2 cut(s)	148, 352
Bme1390I	CCNGG	1 cut(s)	288
Bme18I	GGWCC	2 cut(s)	387, 602
BmgT120I	GGNCC	2 cut(s)	387, 602
BmiI	GGNNCC	3 cut(s)	285, 388, 754
BmrFI	CCNGG	1 cut(s)	288
BmrI	ACTGGG	1 cut(s)	608
BmsI	GCATC	5 cut(s)	14, 370, 498, 520, 673
BmuI	ACTGGG	1 cut(s)	608
BpiI	GAAGAC	1 cut(s)	156
BpmI	CTGGAG	2 cut(s)	46, 594
BpuEI	CTTGAG	2 cut(s)	714, 845
BsaJI	CCNNGG	3 cut(s)	255, 273, 891
Bsc4I	CCNNNNNNNGG	1 cut(s)	763
Bse1I	ACTGG	2 cut(s)	542, 614
Bse3DI	GCAATG	1 cut(s)	230
BseBI	CCWGG	1 cut(s)	288
BseDI	CCNNGG	3 cut(s)	255, 273, 891
BseGI	GGATG	5 cut(s)	322, 406, 423, 535, 901
BseLI	CCNNNNNNNGG	1 cut(s)	763
BseMI	GCAATG	1 cut(s)	230
BseMII	CTCAG	1 cut(s)	513
BseNI	ACTGG	2 cut(s)	542, 614
BseRI	GAGGAG	1 cut(s)	29
BseSI	GKGCMC	1 cut(s)	757
BseXI	GCAGC	2 cut(s)	158, 337
Bsh1236I	CGCG	2 cut(s)	120, 882
BshFI	GGCC	1 cut(s)	263
BshNI	GGYRCC	1 cut(s)	752
BslFI	GGGAC	1 cut(s)	400
BslI	CCNNNNNNNGG	1 cut(s)	763
BsmAI	GTCTC	1 cut(s)	37
BsmBI	CGTCTC	1 cut(s)	37
BsmFI	GGGAC	1 cut(s)	400
BsmI	GAATGC	1 cut(s)	908
BsnI	GGCC	1 cut(s)	263
Bsp1286I	GDGCHC	1 cut(s)	757
Bsp143I	GATC	2 cut(s)	649, 877
Bsp19I	CCATGG	1 cut(s)	255
BspACI	CCGC	5 cut(s)	27, 48, 90, 135, 278
BspANI	GGCC	1 cut(s)	263
BspCNI	CTCAG	1 cut(s)	514
BspFNI	CGCG	2 cut(s)	120, 882
BspHI	TCATGA	1 cut(s)	376
BspLI	GGNNCC	3 cut(s)	285, 388, 754
BspPI	GGATC	1 cut(s)	644
BspQI	GCTCTTC	1 cut(s)	998
BspT107I	GGYRCC	1 cut(s)	752
BspTI	CTTAAG	1 cut(s)	907
BsrDI	GCAATG	1 cut(s)	230
BsrI	ACTGG	2 cut(s)	542, 614
BssECI	CCNNGG	3 cut(s)	255, 273, 891
BssMI	GATC	2 cut(s)	649, 877
BssT1I	CCWWGG	3 cut(s)	255, 273, 891
Bst2UI	CCWGG	1 cut(s)	288
Bst4CI	ACNGT	2 cut(s)	793, 944
Bst6I	CTCTTC	4 cut(s)	61, 106, 190, 998
BstAFI	CTTAAG	1 cut(s)	907
BstC8I	GCNNGC	1 cut(s)	487
BstDEI	CTNAG	2 cut(s)	339, 522
BstDSI	CCRYGG	1 cut(s)	255
BstF5I	GGATG	5 cut(s)	322, 406, 423, 535, 901
BstFNI	CGCG	2 cut(s)	120, 882
BstHHI	GCGC	2 cut(s)	122, 884
BstKTI	GATC	2 cut(s)	652, 880
BstMAI	GTCTC	1 cut(s)	37
BstMBI	GATC	2 cut(s)	649, 877
BstMWI	GCNNNNNNNGC	4 cut(s)	81, 143, 269, 855
BstNI	CCWGG	1 cut(s)	288
BstNSI	RCATGY	2 cut(s)	489, 853
BstSCI	CCNGG	1 cut(s)	286
BstSLI	GKGCMC	1 cut(s)	757
BstUI	CGCG	2 cut(s)	120, 882
BstV1I	GCAGC	2 cut(s)	158, 337
BstV2I	GAAGAC	1 cut(s)	156
BstXI	CCANNNNNNTGG	2 cut(s)	280, 549
BsuRI	GGCC	1 cut(s)	263
BtgI	CCRYGG	1 cut(s)	255
BtsCI	GGATG	5 cut(s)	322, 406, 423, 535, 901
BtsI	GCAGTG	1 cut(s)	224
BtsIMutI	CAGTG	1 cut(s)	224
Cac8I	GCNNGC	1 cut(s)	487
CciI	TCATGA	1 cut(s)	376
CfoI	GCGC	2 cut(s)	122, 884
Cfr13I	GGNCC	2 cut(s)	387, 602
Csp6I	GTAC	3 cut(s)	78, 291, 536
CspCI	CAANNNNNGTGG	2 cut(s)	394, 429
CviAII	CATG	8 cut(s)	72, 143, 256, 377, 486, 559, 850, 859
CviQI	GTAC	3 cut(s)	78, 291, 536
DdeI	CTNAG	2 cut(s)	339, 522
DpnI	GATC	2 cut(s)	651, 879
DpnII	GATC	2 cut(s)	649, 877
Eam1104I	CTCTTC	4 cut(s)	61, 106, 190, 998
EarI	CTCTTC	4 cut(s)	61, 106, 190, 998
Eco130I	CCWWGG	3 cut(s)	255, 273, 891
Eco147I	AGGCCT	1 cut(s)	263
Eco47I	GGWCC	2 cut(s)	387, 602
Eco57I	CTGAAG	4 cut(s)	600, 675, 690, 858
EcoO109I	RGGNCCY	1 cut(s)	387
EcoRII	CCWGG	1 cut(s)	286
EcoT14I	CCWWGG	3 cut(s)	255, 273, 891
EcoT22I	ATGCAT	1 cut(s)	491
ErhI	CCWWGG	3 cut(s)	255, 273, 891
Esp3I	CGTCTC	1 cut(s)	37
FaeI	CATG	8 cut(s)	75, 146, 259, 380, 489, 562, 853, 862
FalI	AAGNNNNNCTT	8 cut(s)	648, 680, 663, 695, 689, 721, 807, 839
FaqI	GGGAC	1 cut(s)	400
FatI	CATG	8 cut(s)	71, 142, 255, 376, 485, 558, 849, 858
FauI	CCCGC	2 cut(s)	97, 142
Fnu4HI	GCNGC	2 cut(s)	147, 351
FokI	GGATG	5 cut(s)	329, 413, 430, 542, 908
Fsp4HI	GCNGC	2 cut(s)	147, 351
FspBI	CTAG	1 cut(s)	632
GlaI	GCGC	2 cut(s)	121, 883
GluI	GCNGC	2 cut(s)	147, 351
GsuI	CTGGAG	2 cut(s)	46, 594
HaeIII	GGCC	1 cut(s)	263
HhaI	GCGC	2 cut(s)	122, 884
Hin1II	CATG	8 cut(s)	75, 146, 259, 380, 489, 562, 853, 862
Hin6I	GCGC	2 cut(s)	120, 882
HinP1I	GCGC	2 cut(s)	120, 882
HindIII	AAGCTT	1 cut(s)	703
HinfI	GANTC	3 cut(s)	251, 635, 830
HphI	GGTGA	1 cut(s)	3
Hpy188I	TCNGA	3 cut(s)	250, 606, 877
Hpy188III	TCNNGA	8 cut(s)	63, 377, 653, 668, 680, 731, 824, 990
HpyAV	CCTTC	5 cut(s)	95, 274, 307, 650, 882
HpyCH4III	ACNGT	2 cut(s)	793, 944
HpyCH4V	TGCA	6 cut(s)	75, 146, 383, 489, 533, 620
HpyF10VI	GCNNNNNNNGC	4 cut(s)	81, 143, 269, 855
HpyF3I	CTNAG	2 cut(s)	339, 522
Hsp92II	CATG	8 cut(s)	75, 146, 259, 380, 489, 562, 853, 862
HspAI	GCGC	2 cut(s)	120, 882
Kzo9I	GATC	2 cut(s)	649, 877
LguI	GCTCTTC	1 cut(s)	998
LmnI	GCTCC	4 cut(s)	50, 283, 575, 992
Lsp1109I	GCAGC	2 cut(s)	158, 337
LweI	GCATC	5 cut(s)	14, 370, 498, 520, 673
MaeI	CTAG	1 cut(s)	632
MalI	GATC	2 cut(s)	651, 879
MboI	GATC	2 cut(s)	649, 877
MfeI	CAATTG	1 cut(s)	395
MhlI	GDGCHC	1 cut(s)	757
MluCI	AATT	5 cut(s)	112, 395, 406, 802, 985
MlyI	GAGTC	1 cut(s)	629
MmeI	TCCRAC	1 cut(s)	629
Mph1103I	ATGCAT	1 cut(s)	491
MroXI	GAANNNNTTC	1 cut(s)	944
MseI	TTAA	3 cut(s)	468, 480, 908
MspCI	CTTAAG	1 cut(s)	907
MspR9I	CCNGG	1 cut(s)	288
MunI	CAATTG	1 cut(s)	395
Mva1269I	GAATGC	1 cut(s)	908
MvaI	CCWGG	1 cut(s)	288
MvnI	CGCG	2 cut(s)	120, 882
MwoI	GCNNNNNNNGC	4 cut(s)	81, 143, 269, 855
NcoI	CCATGG	1 cut(s)	255
NdeII	GATC	2 cut(s)	649, 877
NlaIII	CATG	8 cut(s)	75, 146, 259, 380, 489, 562, 853, 862
NlaIV	GGNNCC	3 cut(s)	285, 388, 754
NsiI	ATGCAT	1 cut(s)	491
NspI	RCATGY	2 cut(s)	489, 853
PaeI	GCATGC	1 cut(s)	489
PagI	TCATGA	1 cut(s)	376
PceI	AGGCCT	1 cut(s)	263
PciSI	GCTCTTC	1 cut(s)	998
PcsI	WCGNNNNNNNCGW	1 cut(s)	450
PctI	GAATGC	1 cut(s)	908
PdmI	GAANNNNTTC	1 cut(s)	944
PfeI	GAWTC	2 cut(s)	251, 830
PflMI	CCANNNNNTGG	1 cut(s)	763
PkrI	GCNGC	2 cut(s)	148, 352
PleI	GAGTC	1 cut(s)	629
PpsI	GAGTC	1 cut(s)	629
PpuMI	RGGWCCY	1 cut(s)	387
Psp5II	RGGWCCY	1 cut(s)	387
Psp6I	CCWGG	1 cut(s)	286
PspGI	CCWGG	1 cut(s)	286
PspN4I	GGNNCC	3 cut(s)	285, 388, 754
PspPI	GGNCC	2 cut(s)	387, 602
PspPPI	RGGWCCY	1 cut(s)	387
RsaI	GTAC	3 cut(s)	79, 292, 537
RsaNI	GTAC	3 cut(s)	78, 291, 536
SapI	GCTCTTC	1 cut(s)	998
SaqAI	TTAA	3 cut(s)	468, 480, 908
SatI	GCNGC	2 cut(s)	147, 351
Sau3AI	GATC	2 cut(s)	649, 877
Sau96I	GGNCC	2 cut(s)	387, 602
SchI	GAGTC	1 cut(s)	629
ScrFI	CCNGG	1 cut(s)	288
SduI	GDGCHC	1 cut(s)	757
SfaNI	GCATC	5 cut(s)	14, 370, 498, 520, 673
SinI	GGWCC	2 cut(s)	387, 602
SmlI	CTYRAG	3 cut(s)	729, 824, 907
SmoI	CTYRAG	3 cut(s)	729, 824, 907
SphI	GCATGC	1 cut(s)	489
Sse9I	AATT	5 cut(s)	112, 395, 406, 802, 985
SseBI	AGGCCT	1 cut(s)	263
SsiI	CCGC	5 cut(s)	27, 48, 90, 135, 278
SspMI	CTAG	1 cut(s)	632
StuI	AGGCCT	1 cut(s)	263
StyD4I	CCNGG	1 cut(s)	286
StyI	CCWWGG	3 cut(s)	255, 273, 891
TaaI	ACNGT	2 cut(s)	793, 944
TaqI	TCGA	2 cut(s)	444, 709
TasI	AATT	5 cut(s)	112, 395, 406, 802, 985
TatI	WGTACW	2 cut(s)	77, 535
TfiI	GAWTC	2 cut(s)	251, 830
Tru1I	TTAA	3 cut(s)	468, 480, 908
Tru9I	TTAA	3 cut(s)	468, 480, 908
TscAI	CASTG	1 cut(s)	231
TseI	GCWGC	2 cut(s)	146, 350
TspDTI	ATGAA	6 cut(s)	326, 365, 434, 453, 795, 915
TspRI	CASTG	1 cut(s)	231
Van91I	CCANNNNNTGG	1 cut(s)	763
Vha464I	CTTAAG	1 cut(s)	907
VpaK11BI	GGWCC	2 cut(s)	387, 602
XceI	RCATGY	2 cut(s)	489, 853
XmnI	GAANNNNTTC	1 cut(s)	944
XspI	CTAG	1 cut(s)	632
Zsp2I	ATGCAT	1 cut(s)	491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.