Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0009416

Physical Location & Seq

Genomic Coordinates Reverse (-)

10457849 .. 10460335

Gene Structure 2487 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011548

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGCATCATCATCAACTACCTCCACCGCCGTCTCCCTTCTCTGCTCCGCAACCTCTTCCTCCAGATTTCCATTCAGTACAACTTTTCCCGCCAAATCCTCATCAACGCTCAATTTTCGCGCCAACTCTCTCCCCGCCACCCGTGCAGCTTCTTCTTCTTCGTCTTCGTCTTCTTCAGGTAAAGATGAGATTTTGGGGAGAAGAGGACTGCTATTCACACTCACAGCCACACTGCCATTGCTTCTTCCTTTCTCGGAATCCATGGAGGCCTTTACGGCCAAGGCGGTGGAGCCAGATACAAGTGTATATGAGGTTATGAAGGAAGAGATTAGGAAAGTTGTGTCTAAGGGCAAAGCTGCTGGTGTGCTTCGTTTTGTATTTCATGATGCAGGGACCTTTCAATTGGATGACAATTCGGGTGGGATGAATGGTTCAGTCATATATGAACTCGATAGACCCGAAAATAAAGGTCTTCAAACTCCTTTTAAGATTTTAGAGAAAGCAAAGACTGAGGTGGATGCAGTACAACCAGTATCGTGGGCAGACATGATTGCTGTGGCTGGAGCTGAAGCAGTTTCAGTATGTGGAGGTCCGACTATCCCAGTTGCATTGGGCAGACTAGACTCAGAGAAGCCTGATCCTGAAGGAAAACTTCCTGAAGAAACTCTTGATGCTTATGGTCTAAAGCAAAGCTTTCGAGCAAAAGGCTTATCAACTCAAGAACTTGTTGCTCTGTCAGGTGCCCATACTCTGGGAAATAAAGGTTTTGGAAGCCCGACTGTTTTTGACAATTCGTACTTCAAAGTTCTTCTTGAGGAATCTGTGTCCTCAGGTAGTATGTCAAGCATGATTGGACTTCCTTCAGATCGCGCACTTCCCAAGGATGATGAATGCTTAAGATGGATAAAAAGGTATGCCGACAATGAGAACAGTTTCTTTGAAGATTTTGAAAAGGCTTACATCAAGTTGGTCAATTCAGGAGCAAGGTGGAAGAGCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000302 GO:0003006 GO:0003674 GO:0003824 GO:0004130 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009636 GO:0009791 GO:0009845 GO:0009987 GO:0010154 GO:0010431 GO:0016209 GO:0016491 GO:0016684 GO:0016999 GO:0017001 GO:0017144 GO:0021700 GO:0022414 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0034599 GO:0042221 GO:0042737 GO:0042743 GO:0042744 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051186 GO:0051187 GO:0051716 GO:0055114 GO:0061458 GO:0070887 GO:0071695 GO:0072593 GO:0090351 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00053 ko00480 map00053 map00480

Pfam Domains

Protein Families

peroxidase

Protein Analysis

334

Amino Acids

35.69

Weight (kDa)

5.49

Isoelectric Point (pI)

49.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	105 - 308	2.5e-42	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Orthologous Genes (Group: OG0009416)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32320
fragaria_vesca	FvH4_2g29080 FvH4_2g29080 FvH4_2g29080 FvH4_2g29080 FvH4_2g29080
malus_domestica	MD15G1125400.v1.1
prunus_persica	Prupe.1G481000_v2.0.a1
pyrus_communis	pycom08g12640
rosa_chinensis	RchiOBHm_Chr6g0297961
rosa_laevigata	RLG00000011548
rosa_multiflora	Rmu_sc0007302.1_g000002 Rmu_sc0034417.1_g000001
rosa_roxburghii	Rroxscaffold_7G00170050 Rroxscaffold_7G00178890
rosa_rugosa	Rorug06G0277100 Rorug06G0277200
rosa_samantha	Rh6AG387700 Rh6CG401900 Rh6DG388200
rosa_wichuraiana	Rw6G033770 Rw6G033830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	740
AccB7I	CCANNNNNTGG	1 cut(s)	751
AccII	CGCG	2 cut(s)	120, 870
AciI	CCGC	5 cut(s)	27, 48, 90, 135, 284
AclWI	GGATC	1 cut(s)	632
AcoI	YGGCCR	1 cut(s)	276
AcuI	CTGAAG	5 cut(s)	159, 588, 663, 678, 846
AfaI	GTAC	3 cut(s)	79, 525, 797
AfiI	CCNNNNNNNGG	1 cut(s)	751
AflII	CTTAAG	1 cut(s)	895
AgsI	TTSAA	5 cut(s)	401, 476, 802, 941, 950
AloI	GAACNNNNNNTCC	2 cut(s)	415, 447
AluBI	AGCT	5 cut(s)	149, 356, 566, 693, 996
AluI	AGCT	5 cut(s)	149, 356, 566, 693, 996
Alw26I	GTCTC	1 cut(s)	37
AlwI	GGATC	1 cut(s)	632
AoxI	GGCC	2 cut(s)	267, 276
ApeKI	GCWGC	2 cut(s)	146, 356
Asp700I	GAANNNNTTC	1 cut(s)	932
AspLEI	GCGC	2 cut(s)	122, 872
AspS9I	GGNCC	2 cut(s)	393, 590
AvaII	GGWCC	2 cut(s)	393, 590
AxyI	CCTNAGG	1 cut(s)	829
BaeGI	GKGCMC	1 cut(s)	745
BaeI	ACNNNNGTAYC	2 cut(s)	288, 321
BanI	GGYRCC	1 cut(s)	740
BbsI	GAAGAC	3 cut(s)	156, 162, 464
BbvI	GCAGC	2 cut(s)	158, 343
BccI	CCATC	1 cut(s)	894
BceAI	ACGGC	2 cut(s)	14, 291
BcgI	CGANNNNNNTGC	2 cut(s)	677, 711
BcoDI	GTCTC	1 cut(s)	37
BfaI	CTAG	1 cut(s)	620
BfrI	CTTAAG	1 cut(s)	895
BglI	GCCNNNNNGGC	1 cut(s)	275
BisI	GCNGC	2 cut(s)	147, 357
BlsI	GCNGC	2 cut(s)	148, 358
Bme18I	GGWCC	2 cut(s)	393, 590
BmgT120I	GGNCC	2 cut(s)	393, 590
BmiI	GGNNCC	3 cut(s)	291, 394, 742
BmrI	ACTGGG	1 cut(s)	596
BmsI	GCATC	4 cut(s)	14, 376, 508, 661
BmuI	ACTGGG	1 cut(s)	596
BpiI	GAAGAC	3 cut(s)	156, 162, 464
BpmI	CTGGAG	2 cut(s)	46, 582
BpuEI	CTTGAG	2 cut(s)	702, 833
BsaJI	CCNNGG	3 cut(s)	261, 279, 879
Bsc4I	CCNNNNNNNGG	1 cut(s)	751
Bse1I	ACTGG	2 cut(s)	530, 602
Bse21I	CCTNAGG	1 cut(s)	829
Bse3DI	GCAATG	1 cut(s)	236
BseDI	CCNNGG	3 cut(s)	261, 279, 879
BseGI	GGATG	4 cut(s)	412, 429, 523, 889
BseLI	CCNNNNNNNGG	1 cut(s)	751
BseMI	GCAATG	1 cut(s)	236
BseMII	CTCAG	3 cut(s)	501, 639, 843
BseNI	ACTGG	2 cut(s)	530, 602
BseSI	GKGCMC	1 cut(s)	745
BseXI	GCAGC	2 cut(s)	158, 343
BsgI	GTGCAG	1 cut(s)	165
Bsh1236I	CGCG	2 cut(s)	120, 870
BshFI	GGCC	2 cut(s)	269, 278
BshNI	GGYRCC	1 cut(s)	740
BslFI	GGGAC	1 cut(s)	406
BslI	CCNNNNNNNGG	1 cut(s)	751
BsmAI	GTCTC	1 cut(s)	37
BsmBI	CGTCTC	1 cut(s)	37
BsmFI	GGGAC	1 cut(s)	406
BsmI	GAATGC	1 cut(s)	896
BsnI	GGCC	2 cut(s)	269, 278
Bsp1286I	GDGCHC	1 cut(s)	745
Bsp143I	GATC	2 cut(s)	637, 865
Bsp19I	CCATGG	1 cut(s)	261
BspACI	CCGC	5 cut(s)	27, 48, 90, 135, 284
BspANI	GGCC	2 cut(s)	269, 278
BspCNI	CTCAG	3 cut(s)	502, 638, 842
BspFNI	CGCG	2 cut(s)	120, 870
BspHI	TCATGA	1 cut(s)	382
BspLI	GGNNCC	3 cut(s)	291, 394, 742
BspPI	GGATC	1 cut(s)	632
BspQI	GCTCTTC	1 cut(s)	986
BspT107I	GGYRCC	1 cut(s)	740
BspTI	CTTAAG	1 cut(s)	895
BsrDI	GCAATG	1 cut(s)	236
BsrI	ACTGG	2 cut(s)	530, 602
BssECI	CCNNGG	3 cut(s)	261, 279, 879
BssMI	GATC	2 cut(s)	637, 865
BssT1I	CCWWGG	3 cut(s)	261, 279, 879
Bst4CI	ACNGT	2 cut(s)	781, 932
Bst6I	CTCTTC	4 cut(s)	61, 196, 318, 986
BstAFI	CTTAAG	1 cut(s)	895
BstDEI	CTNAG	4 cut(s)	345, 510, 625, 829
BstDSI	CCRYGG	1 cut(s)	261
BstF5I	GGATG	4 cut(s)	412, 429, 523, 889
BstFNI	CGCG	2 cut(s)	120, 870
BstHHI	GCGC	2 cut(s)	122, 872
BstKTI	GATC	2 cut(s)	640, 868
BstMAI	GTCTC	1 cut(s)	37
BstMBI	GATC	2 cut(s)	637, 865
BstMWI	GCNNNNNNNGC	2 cut(s)	143, 275
BstSLI	GKGCMC	1 cut(s)	745
BstUI	CGCG	2 cut(s)	120, 870
BstV1I	GCAGC	2 cut(s)	158, 343
BstV2I	GAAGAC	3 cut(s)	156, 162, 464
BstXI	CCANNNNNNTGG	2 cut(s)	286, 537
Bsu36I	CCTNAGG	1 cut(s)	829
BsuRI	GGCC	2 cut(s)	269, 278
BtgI	CCRYGG	1 cut(s)	261
BtsCI	GGATG	4 cut(s)	412, 429, 523, 889
BtsI	GCAGTG	1 cut(s)	230
BtsIMutI	CAGTG	1 cut(s)	230
CciI	TCATGA	1 cut(s)	382
CfoI	GCGC	2 cut(s)	122, 872
Cfr13I	GGNCC	2 cut(s)	393, 590
Csp6I	GTAC	3 cut(s)	78, 524, 796
CspCI	CAANNNNNGTGG	2 cut(s)	400, 435
CviAII	CATG	4 cut(s)	262, 383, 547, 847
CviQI	GTAC	3 cut(s)	78, 524, 796
DdeI	CTNAG	4 cut(s)	345, 510, 625, 829
DpnI	GATC	2 cut(s)	639, 867
DpnII	GATC	2 cut(s)	637, 865
EaeI	YGGCCR	1 cut(s)	276
Eam1104I	CTCTTC	4 cut(s)	61, 196, 318, 986
EarI	CTCTTC	4 cut(s)	61, 196, 318, 986
Eco130I	CCWWGG	3 cut(s)	261, 279, 879
Eco147I	AGGCCT	1 cut(s)	269
Eco47I	GGWCC	2 cut(s)	393, 590
Eco57I	CTGAAG	5 cut(s)	159, 588, 663, 678, 846
Eco81I	CCTNAGG	1 cut(s)	829
EcoO109I	RGGNCCY	1 cut(s)	393
EcoT14I	CCWWGG	3 cut(s)	261, 279, 879
ErhI	CCWWGG	3 cut(s)	261, 279, 879
Esp3I	CGTCTC	1 cut(s)	37
FaeI	CATG	4 cut(s)	265, 386, 550, 850
FalI	AAGNNNNNCTT	8 cut(s)	636, 668, 651, 683, 677, 709, 795, 827
FaqI	GGGAC	1 cut(s)	406
FatI	CATG	4 cut(s)	261, 382, 546, 846
FauI	CCCGC	2 cut(s)	97, 142
Fnu4HI	GCNGC	2 cut(s)	147, 357
FokI	GGATG	4 cut(s)	419, 436, 530, 896
Fsp4HI	GCNGC	2 cut(s)	147, 357
FspBI	CTAG	1 cut(s)	620
GlaI	GCGC	2 cut(s)	121, 871
GluI	GCNGC	2 cut(s)	147, 357
GsuI	CTGGAG	2 cut(s)	46, 582
HaeIII	GGCC	2 cut(s)	269, 278
HhaI	GCGC	2 cut(s)	122, 872
Hin1II	CATG	4 cut(s)	265, 386, 550, 850
Hin6I	GCGC	2 cut(s)	120, 870
HinP1I	GCGC	2 cut(s)	120, 870
HindIII	AAGCTT	1 cut(s)	691
HinfI	GANTC	3 cut(s)	257, 623, 818
Hpy188I	TCNGA	4 cut(s)	256, 594, 628, 865
Hpy188III	TCNNGA	8 cut(s)	63, 383, 641, 656, 668, 719, 812, 978
HpyAV	CCTTC	4 cut(s)	47, 313, 638, 870
HpyCH4III	ACNGT	2 cut(s)	781, 932
HpyCH4V	TGCA	4 cut(s)	146, 389, 521, 608
HpyF10VI	GCNNNNNNNGC	2 cut(s)	143, 275
HpyF3I	CTNAG	4 cut(s)	345, 510, 625, 829
Hsp92II	CATG	4 cut(s)	265, 386, 550, 850
HspAI	GCGC	2 cut(s)	120, 870
Kzo9I	GATC	2 cut(s)	637, 865
LguI	GCTCTTC	1 cut(s)	986
LmnI	GCTCC	4 cut(s)	50, 289, 563, 980
Lsp1109I	GCAGC	2 cut(s)	158, 343
LweI	GCATC	4 cut(s)	14, 376, 508, 661
MaeI	CTAG	1 cut(s)	620
MalI	GATC	2 cut(s)	639, 867
MboI	GATC	2 cut(s)	637, 865
MfeI	CAATTG	1 cut(s)	401
MhlI	GDGCHC	1 cut(s)	745
MluCI	AATT	5 cut(s)	112, 401, 412, 790, 973
MlyI	GAGTC	1 cut(s)	617
MmeI	TCCRAC	1 cut(s)	617
MroXI	GAANNNNTTC	1 cut(s)	932
MseI	TTAA	2 cut(s)	486, 896
MspCI	CTTAAG	1 cut(s)	895
MunI	CAATTG	1 cut(s)	401
Mva1269I	GAATGC	1 cut(s)	896
MvnI	CGCG	2 cut(s)	120, 870
MwoI	GCNNNNNNNGC	2 cut(s)	143, 275
NcoI	CCATGG	1 cut(s)	261
NdeII	GATC	2 cut(s)	637, 865
NlaIII	CATG	4 cut(s)	265, 386, 550, 850
NlaIV	GGNNCC	3 cut(s)	291, 394, 742
PagI	TCATGA	1 cut(s)	382
PceI	AGGCCT	1 cut(s)	269
PciSI	GCTCTTC	1 cut(s)	986
PcsI	WCGNNNNNNNCGW	1 cut(s)	456
PctI	GAATGC	1 cut(s)	896
PdmI	GAANNNNTTC	1 cut(s)	932
PfeI	GAWTC	2 cut(s)	257, 818
PflMI	CCANNNNNTGG	1 cut(s)	751
PkrI	GCNGC	2 cut(s)	148, 358
PleI	GAGTC	1 cut(s)	617
PpsI	GAGTC	1 cut(s)	617
PpuMI	RGGWCCY	1 cut(s)	393
Psp5II	RGGWCCY	1 cut(s)	393
PspN4I	GGNNCC	3 cut(s)	291, 394, 742
PspPI	GGNCC	2 cut(s)	393, 590
PspPPI	RGGWCCY	1 cut(s)	393
RsaI	GTAC	3 cut(s)	79, 525, 797
RsaNI	GTAC	3 cut(s)	78, 524, 796
SapI	GCTCTTC	1 cut(s)	986
SaqAI	TTAA	2 cut(s)	486, 896
SatI	GCNGC	2 cut(s)	147, 357
Sau3AI	GATC	2 cut(s)	637, 865
Sau96I	GGNCC	2 cut(s)	393, 590
SchI	GAGTC	1 cut(s)	617
SduI	GDGCHC	1 cut(s)	745
SfaNI	GCATC	4 cut(s)	14, 376, 508, 661
SfiI	GGCCNNNNNGGCC	1 cut(s)	275
SinI	GGWCC	2 cut(s)	393, 590
SmlI	CTYRAG	3 cut(s)	717, 812, 895
SmoI	CTYRAG	3 cut(s)	717, 812, 895
Sse9I	AATT	5 cut(s)	112, 401, 412, 790, 973
SseBI	AGGCCT	1 cut(s)	269
SsiI	CCGC	5 cut(s)	27, 48, 90, 135, 284
SspMI	CTAG	1 cut(s)	620
StuI	AGGCCT	1 cut(s)	269
StyI	CCWWGG	3 cut(s)	261, 279, 879
TaaI	ACNGT	2 cut(s)	781, 932
TaqI	TCGA	2 cut(s)	450, 697
TasI	AATT	5 cut(s)	112, 401, 412, 790, 973
TatI	WGTACW	2 cut(s)	77, 523
TfiI	GAWTC	2 cut(s)	257, 818
Tru1I	TTAA	2 cut(s)	486, 896
Tru9I	TTAA	2 cut(s)	486, 896
TscAI	CASTG	1 cut(s)	237
TseI	GCWGC	2 cut(s)	146, 356
TspDTI	ATGAA	5 cut(s)	332, 371, 440, 459, 903
TspRI	CASTG	1 cut(s)	237
Van91I	CCANNNNNTGG	1 cut(s)	751
Vha464I	CTTAAG	1 cut(s)	895
VpaK11BI	GGWCC	2 cut(s)	393, 590
XmnI	GAANNNNTTC	1 cut(s)	932
XspI	CTAG	1 cut(s)	620

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.