Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0009416

Physical Location & Seq

Genomic Coordinates Forward (+)

58422859 .. 58426407

Gene Structure 3549 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G033830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGGCATCATCATCAACTACCTCCACCGCCGTCTCCCTCCTCTGCCCCGCAACCTCTTCCTCCAGATTTCCATTCAGTACAACTCTTCCCGCCAAATCCTCACCAACGCTCAATTTTCGCGCCAACTCTCTCCCCGCCACCCATGCATCTTCTTCTTCTTCTTCGTCTTCAGGTAAAGATGAGATTTTGGGGAGAAGAGGACTGGTGTTCACACTCACAGCCACACTGCCATTGCTTCTTCCTTTCTCGGAATCCATGGAGGCCTTCACAGCCAAGGCGGTGGAGCCAGATACAAGTATATATGAGGTTATGAAGGAAGAGATTAGGAAAGTTGTGTCTAAGGGCAAAGCTGCTGGTGTGCTTCGTTTTGTATTTCACGATGCAGGGACCTTTCAATTGGATGACAATTCGGGTGGGATGAATGGTTCAGTCATATATGAACTCGATAGACCCGAAAATAAAGGTCTTAAAACTCCTTTTAAGATTTTAGAGAAAGCAAAGACTGAGGTGGATGCAGTACAACCAGTATCGTGGGCAGACATGATTGCTGTGGCTGGAGCTGAAGCAGTTTCAGTATGTGGAGGTCCGACTATCCCAGTTGCATTGGGCAGACTAGACTCAAAGGAGCCTGATCCTGAAGGAAAACTTCCTGAAGAAACTCTTGATGCATATGGTCTAAAGCAAAGCTTTCGAGCAAAAGGCTTATCAACTCAAGAACTTGTTGCTCTGTCAGGTGCCCATACTCTGGGAAATAAAGGTTTTGGAAGCCCGACTGTTTTTGACAATTCATACTTCAAAGTTCTTCTTGAGGAATCTGTGTCCTCAGGTAGTATGTCAAGCATGACTGGACTTCCTTCAGATCGCGCACTTCCCAAGGATGGTGAATGCTTAAGAACAGTATGTGGTCTTTACTTAAAATGGGAACAGTATCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000302 GO:0003006 GO:0003674 GO:0003824 GO:0004130 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009636 GO:0009791 GO:0009845 GO:0009987 GO:0010154 GO:0010431 GO:0016209 GO:0016491 GO:0016684 GO:0016999 GO:0017001 GO:0017144 GO:0021700 GO:0022414 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0034599 GO:0042221 GO:0042737 GO:0042743 GO:0042744 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051186 GO:0051187 GO:0051716 GO:0055114 GO:0061458 GO:0070887 GO:0071695 GO:0072593 GO:0090351 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00053 ko00480 map00053 map00480

Pfam Domains

Protein Families

peroxidase

Protein Analysis

311

Amino Acids

33.05

Weight (kDa)

5.7

Isoelectric Point (pI)

47.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	104 - 298	2.1e-40	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009416)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32320
fragaria_vesca	FvH4_2g29080 FvH4_2g29080 FvH4_2g29080 FvH4_2g29080 FvH4_2g29080
malus_domestica	MD15G1125400.v1.1
prunus_persica	Prupe.1G481000_v2.0.a1
pyrus_communis	pycom08g12640
rosa_chinensis	RchiOBHm_Chr6g0297961
rosa_laevigata	RLG00000011548
rosa_multiflora	Rmu_sc0007302.1_g000002 Rmu_sc0034417.1_g000001
rosa_roxburghii	Rroxscaffold_7G00170050 Rroxscaffold_7G00178890
rosa_rugosa	Rorug06G0277100 Rorug06G0277200
rosa_samantha	Rh6AG387700 Rh6CG401900 Rh6DG388200
rosa_wichuraiana	Rw6G033770 Rw6G033830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	734
AccB7I	CCANNNNNTGG	1 cut(s)	745
AccII	CGCG	2 cut(s)	120, 864
AciI	CCGC	5 cut(s)	27, 48, 90, 135, 278
AclWI	GGATC	1 cut(s)	626
AcuI	CTGAAG	5 cut(s)	153, 582, 657, 672, 840
AfaI	GTAC	2 cut(s)	79, 519
AfiI	CCNNNNNNNGG	2 cut(s)	745, 878
AflII	CTTAAG	1 cut(s)	889
AgsI	TTSAA	2 cut(s)	395, 796
AloI	GAACNNNNNNTCC	2 cut(s)	409, 441
AluBI	AGCT	3 cut(s)	350, 560, 687
AluI	AGCT	3 cut(s)	350, 560, 687
Alw26I	GTCTC	1 cut(s)	37
AlwI	GGATC	1 cut(s)	626
AoxI	GGCC	1 cut(s)	261
ApeKI	GCWGC	1 cut(s)	350
AspLEI	GCGC	2 cut(s)	122, 866
AspS9I	GGNCC	2 cut(s)	387, 584
AsuHPI	GGTGA	2 cut(s)	93, 893
AvaII	GGWCC	2 cut(s)	387, 584
AxyI	CCTNAGG	1 cut(s)	823
BaeGI	GKGCMC	1 cut(s)	739
BanI	GGYRCC	1 cut(s)	734
BbsI	GAAGAC	1 cut(s)	159
BbvI	GCAGC	1 cut(s)	337
BccI	CCATC	1 cut(s)	872
BceAI	ACGGC	1 cut(s)	14
BcgI	CGANNNNNNTGC	2 cut(s)	671, 705
BcoDI	GTCTC	1 cut(s)	37
BfaI	CTAG	1 cut(s)	614
BfrI	CTTAAG	1 cut(s)	889
BisI	GCNGC	1 cut(s)	351
BlsI	GCNGC	1 cut(s)	352
Bme18I	GGWCC	2 cut(s)	387, 584
BmgT120I	GGNCC	2 cut(s)	387, 584
BmiI	GGNNCC	4 cut(s)	285, 388, 627, 736
BmrI	ACTGGG	1 cut(s)	590
BmsI	GCATC	5 cut(s)	14, 155, 370, 502, 655
BmuI	ACTGGG	1 cut(s)	590
BpiI	GAAGAC	1 cut(s)	159
BpmI	CTGGAG	2 cut(s)	46, 576
BpuEI	CTTGAG	2 cut(s)	696, 827
BsaJI	CCNNGG	3 cut(s)	255, 273, 873
Bsc4I	CCNNNNNNNGG	2 cut(s)	745, 878
Bse1I	ACTGG	4 cut(s)	207, 524, 596, 850
Bse21I	CCTNAGG	1 cut(s)	823
Bse3DI	GCAATG	1 cut(s)	230
BseDI	CCNNGG	3 cut(s)	255, 273, 873
BseGI	GGATG	4 cut(s)	406, 423, 517, 883
BseLI	CCNNNNNNNGG	2 cut(s)	745, 878
BseMI	GCAATG	1 cut(s)	230
BseMII	CTCAG	2 cut(s)	495, 837
BseNI	ACTGG	4 cut(s)	207, 524, 596, 850
BseRI	GAGGAG	1 cut(s)	29
BseSI	GKGCMC	1 cut(s)	739
BseXI	GCAGC	1 cut(s)	337
Bsh1236I	CGCG	2 cut(s)	120, 864
BshFI	GGCC	1 cut(s)	263
BshNI	GGYRCC	1 cut(s)	734
BslFI	GGGAC	1 cut(s)	400
BslI	CCNNNNNNNGG	2 cut(s)	745, 878
BsmAI	GTCTC	1 cut(s)	37
BsmBI	CGTCTC	1 cut(s)	37
BsmFI	GGGAC	1 cut(s)	400
BsmI	GAATGC	1 cut(s)	890
BsnI	GGCC	1 cut(s)	263
Bsp1286I	GDGCHC	1 cut(s)	739
Bsp143I	GATC	2 cut(s)	631, 859
Bsp19I	CCATGG	1 cut(s)	255
BspACI	CCGC	5 cut(s)	27, 48, 90, 135, 278
BspANI	GGCC	1 cut(s)	263
BspCNI	CTCAG	2 cut(s)	496, 836
BspFNI	CGCG	2 cut(s)	120, 864
BspLI	GGNNCC	4 cut(s)	285, 388, 627, 736
BspPI	GGATC	1 cut(s)	626
BspT107I	GGYRCC	1 cut(s)	734
BspTI	CTTAAG	1 cut(s)	889
BsrDI	GCAATG	1 cut(s)	230
BsrI	ACTGG	4 cut(s)	207, 524, 596, 850
BssECI	CCNNGG	3 cut(s)	255, 273, 873
BssMI	GATC	2 cut(s)	631, 859
BssT1I	CCWWGG	3 cut(s)	255, 273, 873
Bst4CI	ACNGT	3 cut(s)	775, 898, 927
Bst6I	CTCTTC	4 cut(s)	61, 90, 190, 312
BstAFI	CTTAAG	1 cut(s)	889
BstDEI	CTNAG	3 cut(s)	339, 504, 823
BstDSI	CCRYGG	1 cut(s)	255
BstF5I	GGATG	4 cut(s)	406, 423, 517, 883
BstFNI	CGCG	2 cut(s)	120, 864
BstHHI	GCGC	2 cut(s)	122, 866
BstKTI	GATC	2 cut(s)	634, 862
BstMAI	GTCTC	1 cut(s)	37
BstMBI	GATC	2 cut(s)	631, 859
BstMWI	GCNNNNNNNGC	2 cut(s)	143, 269
BstSLI	GKGCMC	1 cut(s)	739
BstUI	CGCG	2 cut(s)	120, 864
BstV1I	GCAGC	1 cut(s)	337
BstV2I	GAAGAC	1 cut(s)	159
BstXI	CCANNNNNNTGG	2 cut(s)	280, 531
Bsu36I	CCTNAGG	1 cut(s)	823
BsuRI	GGCC	1 cut(s)	263
BtgI	CCRYGG	1 cut(s)	255
BtsCI	GGATG	4 cut(s)	406, 423, 517, 883
BtsI	GCAGTG	1 cut(s)	224
BtsIMutI	CAGTG	1 cut(s)	224
CfoI	GCGC	2 cut(s)	122, 866
Cfr13I	GGNCC	2 cut(s)	387, 584
Csp6I	GTAC	2 cut(s)	78, 518
CspCI	CAANNNNNGTGG	2 cut(s)	394, 429
CviAII	CATG	4 cut(s)	143, 256, 541, 841
CviQI	GTAC	2 cut(s)	78, 518
DdeI	CTNAG	3 cut(s)	339, 504, 823
DpnI	GATC	2 cut(s)	633, 861
DpnII	GATC	2 cut(s)	631, 859
Eam1104I	CTCTTC	4 cut(s)	61, 90, 190, 312
EarI	CTCTTC	4 cut(s)	61, 90, 190, 312
Eco130I	CCWWGG	3 cut(s)	255, 273, 873
Eco147I	AGGCCT	1 cut(s)	263
Eco47I	GGWCC	2 cut(s)	387, 584
Eco57I	CTGAAG	5 cut(s)	153, 582, 657, 672, 840
Eco81I	CCTNAGG	1 cut(s)	823
EcoO109I	RGGNCCY	1 cut(s)	387
EcoT14I	CCWWGG	3 cut(s)	255, 273, 873
EcoT22I	ATGCAT	2 cut(s)	148, 670
ErhI	CCWWGG	3 cut(s)	255, 273, 873
Esp3I	CGTCTC	1 cut(s)	37
FaeI	CATG	4 cut(s)	146, 259, 544, 844
FalI	AAGNNNNNCTT	8 cut(s)	630, 662, 645, 677, 671, 703, 789, 821
FaqI	GGGAC	1 cut(s)	400
FatI	CATG	4 cut(s)	142, 255, 540, 840
FauI	CCCGC	3 cut(s)	55, 97, 142
FauNDI	CATATG	1 cut(s)	670
Fnu4HI	GCNGC	1 cut(s)	351
FokI	GGATG	4 cut(s)	413, 430, 524, 890
Fsp4HI	GCNGC	1 cut(s)	351
FspBI	CTAG	1 cut(s)	614
GlaI	GCGC	2 cut(s)	121, 865
GluI	GCNGC	1 cut(s)	351
GsuI	CTGGAG	2 cut(s)	46, 576
HaeIII	GGCC	1 cut(s)	263
HhaI	GCGC	2 cut(s)	122, 866
Hin1II	CATG	4 cut(s)	146, 259, 544, 844
Hin6I	GCGC	2 cut(s)	120, 864
HinP1I	GCGC	2 cut(s)	120, 864
HindIII	AAGCTT	1 cut(s)	685
HinfI	GANTC	3 cut(s)	251, 617, 812
HphI	GGTGA	2 cut(s)	93, 893
Hpy166II	GTNNAC	1 cut(s)	210
Hpy188I	TCNGA	3 cut(s)	250, 588, 859
Hpy188III	TCNNGA	7 cut(s)	63, 377, 635, 650, 662, 713, 806
Hpy8I	GTNNAC	1 cut(s)	210
HpyAV	CCTTC	4 cut(s)	274, 307, 632, 864
HpyCH4III	ACNGT	3 cut(s)	775, 898, 927
HpyCH4V	TGCA	5 cut(s)	146, 383, 515, 602, 668
HpyF10VI	GCNNNNNNNGC	2 cut(s)	143, 269
HpyF3I	CTNAG	3 cut(s)	339, 504, 823
Hsp92II	CATG	4 cut(s)	146, 259, 544, 844
HspAI	GCGC	2 cut(s)	120, 864
Kzo9I	GATC	2 cut(s)	631, 859
LmnI	GCTCC	3 cut(s)	283, 557, 625
Lsp1109I	GCAGC	1 cut(s)	337
LweI	GCATC	5 cut(s)	14, 155, 370, 502, 655
MaeI	CTAG	1 cut(s)	614
MalI	GATC	2 cut(s)	633, 861
MboI	GATC	2 cut(s)	631, 859
MfeI	CAATTG	1 cut(s)	395
MhlI	GDGCHC	1 cut(s)	739
MluCI	AATT	4 cut(s)	112, 395, 406, 784
MlyI	GAGTC	1 cut(s)	611
MmeI	TCCRAC	1 cut(s)	611
Mph1103I	ATGCAT	2 cut(s)	148, 670
MseI	TTAA	5 cut(s)	468, 480, 890, 914, 934
MspCI	CTTAAG	1 cut(s)	889
MunI	CAATTG	1 cut(s)	395
Mva1269I	GAATGC	1 cut(s)	890
MvnI	CGCG	2 cut(s)	120, 864
MwoI	GCNNNNNNNGC	2 cut(s)	143, 269
NcoI	CCATGG	1 cut(s)	255
NdeI	CATATG	1 cut(s)	670
NdeII	GATC	2 cut(s)	631, 859
NlaIII	CATG	4 cut(s)	146, 259, 544, 844
NlaIV	GGNNCC	4 cut(s)	285, 388, 627, 736
NsiI	ATGCAT	2 cut(s)	148, 670
PceI	AGGCCT	1 cut(s)	263
PcsI	WCGNNNNNNNCGW	1 cut(s)	450
PctI	GAATGC	1 cut(s)	890
PfeI	GAWTC	2 cut(s)	251, 812
PflMI	CCANNNNNTGG	1 cut(s)	745
PkrI	GCNGC	1 cut(s)	352
PleI	GAGTC	1 cut(s)	611
PpsI	GAGTC	1 cut(s)	611
PpuMI	RGGWCCY	1 cut(s)	387
Psp5II	RGGWCCY	1 cut(s)	387
PspN4I	GGNNCC	4 cut(s)	285, 388, 627, 736
PspPI	GGNCC	2 cut(s)	387, 584
PspPPI	RGGWCCY	1 cut(s)	387
RsaI	GTAC	2 cut(s)	79, 519
RsaNI	GTAC	2 cut(s)	78, 518
SaqAI	TTAA	5 cut(s)	468, 480, 890, 914, 934
SatI	GCNGC	1 cut(s)	351
Sau3AI	GATC	2 cut(s)	631, 859
Sau96I	GGNCC	2 cut(s)	387, 584
SchI	GAGTC	1 cut(s)	611
SduI	GDGCHC	1 cut(s)	739
SfaNI	GCATC	5 cut(s)	14, 155, 370, 502, 655
SinI	GGWCC	2 cut(s)	387, 584
SmlI	CTYRAG	3 cut(s)	711, 806, 889
SmoI	CTYRAG	3 cut(s)	711, 806, 889
Sse9I	AATT	4 cut(s)	112, 395, 406, 784
SseBI	AGGCCT	1 cut(s)	263
SsiI	CCGC	5 cut(s)	27, 48, 90, 135, 278
SspMI	CTAG	1 cut(s)	614
StuI	AGGCCT	1 cut(s)	263
StyI	CCWWGG	3 cut(s)	255, 273, 873
TaaI	ACNGT	3 cut(s)	775, 898, 927
TaqI	TCGA	2 cut(s)	444, 691
TasI	AATT	4 cut(s)	112, 395, 406, 784
TatI	WGTACW	2 cut(s)	77, 517
TfiI	GAWTC	2 cut(s)	251, 812
Tru1I	TTAA	5 cut(s)	468, 480, 890, 914, 934
Tru9I	TTAA	5 cut(s)	468, 480, 890, 914, 934
TscAI	CASTG	1 cut(s)	231
TseI	GCWGC	1 cut(s)	350
TspDTI	ATGAA	4 cut(s)	326, 434, 453, 777
TspRI	CASTG	1 cut(s)	231
Van91I	CCANNNNNTGG	1 cut(s)	745
Vha464I	CTTAAG	1 cut(s)	889
VpaK11BI	GGWCC	2 cut(s)	387, 584
XspI	CTAG	1 cut(s)	614
Zsp2I	ATGCAT	2 cut(s)	148, 670

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.