Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0009416

Physical Location & Seq

Genomic Coordinates Reverse (-)

11129391 .. 11132715

Gene Structure 3325 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g12640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGTCTCATTACCTCAACCATCCGTTAGGTATGGCGCCAACTACTTCCACCGCCTTCCTCCTCAGCTCCTCAGCCCCGTCCATCTCTCCCGCCGCTTCCTCCACGACATTCCCGTTCAACTTCATCTTTCCCGCCAAAGCCCTCTCAACGGTGAATTTTAGCGCCAATCCTCTCCACGCCGTCAGTGCCGCCACTTCAGGTAAAGATCACGTCTTGGGCAGAAGAGGACTGGTGCTTTCACTTACTGCCACACTGCCATTGCTGCTTCCTTTCTATGAATGCACAGCGGCGAAGGCGGCTGAGGAATATGAGCTTATGAAGGAGGAGATCAGGAAGGTGGTGACGAAGGGTAAGGCCGCCGGGGTGCTTCGTTTGGTGTTCCATGATGCCGGGACCTTTCAAATTGATGATAATTCAGGTGGTATGGATGGTTCTATCGTTTATGAACTTGATAGACCGGAAAACAAAGGTCTTAAAAGTCCTTTCAAGATTCTAGAGAAAGCAAAGAGTGAGGTGGATGCAGTAAACCCAGTGTCCTGGGCAGACATGATTGCTGTGGCTGGAGCAGAAGCAGTTTCAATATGCGGAGGTCCAACAATCCAAGTCCCGTTGGGCAGACTAGATGCAAAGGAGCCTGATCCTGAAGGAAAGCTGCCTGAAGAAACTCTGGATGCTTTTGGTCTGAAGCAAAGCTTTCAAACAAAAGGCTTGTCAACACAGGAACTTGTTGCTCTGTCAGGAGCTCATACTATTGGAAATAGAGGTTTCGGGAACCCAACTGTTTTCGACAATACATACTTCAAAATTCTGCTTGACAAACCATCTTCAGGTAGCATGATTGGCCTTCCCTCGGACCGTGCACTTGCCAAGGATGATGAATGCTTAAGCTGGATCGCAAAGTATGCCGAGGACCAGAATACGTTCTTTGAAGATTTCAAGACGGCTTATCTCAAACTAGTGAATTCGGGAGCCAGGTGGAAGAGCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000302 GO:0003006 GO:0003674 GO:0003824 GO:0004130 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009636 GO:0009791 GO:0009845 GO:0009987 GO:0010154 GO:0010431 GO:0016209 GO:0016491 GO:0016684 GO:0016999 GO:0017001 GO:0017144 GO:0021700 GO:0022414 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0034599 GO:0042221 GO:0042737 GO:0042743 GO:0042744 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051186 GO:0051187 GO:0051716 GO:0055114 GO:0061458 GO:0070887 GO:0071695 GO:0072593 GO:0090351 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00053 ko00480 map00053 map00480

Pfam Domains

Protein Families

peroxidase

Protein Analysis

330

Amino Acids

35.3

Weight (kDa)

5.75

Isoelectric Point (pI)

39.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	108 - 304	3.1e-43	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009416)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32320
fragaria_vesca	FvH4_2g29080 FvH4_2g29080 FvH4_2g29080 FvH4_2g29080 FvH4_2g29080
malus_domestica	MD15G1125400.v1.1
prunus_persica	Prupe.1G481000_v2.0.a1
pyrus_communis	pycom08g12640
rosa_chinensis	RchiOBHm_Chr6g0297961
rosa_laevigata	RLG00000011548
rosa_multiflora	Rmu_sc0007302.1_g000002 Rmu_sc0034417.1_g000001
rosa_roxburghii	Rroxscaffold_7G00170050 Rroxscaffold_7G00178890
rosa_rugosa	Rorug06G0277100 Rorug06G0277200
rosa_samantha	Rh6AG387700 Rh6CG401900 Rh6DG388200
rosa_wichuraiana	Rw6G033770 Rw6G033830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	34
AciI	CCGC	9 cut(s)	51, 90, 93, 132, 189, 287, 296, 357, 585
AclWI	GGATC	2 cut(s)	632, 899
AcsI	RAATTY	3 cut(s)	154, 804, 961
AcuI	CTGAAG	5 cut(s)	180, 663, 678, 704, 810
AcyI	GRCGYC	1 cut(s)	35
AfiI	CCNNNNNNNGG	3 cut(s)	148, 827, 850
AflII	CTTAAG	1 cut(s)	883
AgsI	TTSAA	8 cut(s)	118, 401, 487, 579, 698, 802, 929, 937
AhlI	ACTAGT	1 cut(s)	955
AjiI	CACGTC	1 cut(s)	211
AjnI	CCWGG	2 cut(s)	536, 971
AluBI	AGCT	7 cut(s)	66, 313, 652, 693, 743, 888, 984
AluI	AGCT	7 cut(s)	66, 313, 652, 693, 743, 888, 984
Alw21I	GWGCWC	2 cut(s)	745, 862
Alw26I	GTCTC	1 cut(s)	9
Alw44I	GTGCAC	1 cut(s)	858
AlwI	GGATC	2 cut(s)	632, 899
AoxI	GGCC	2 cut(s)	354, 841
ApaLI	GTGCAC	1 cut(s)	858
ApeKI	GCWGC	2 cut(s)	262, 652
ApoI	RAATTY	3 cut(s)	154, 804, 961
ArsI	GACNNNNNNTTYG	2 cut(s)	695, 727
Asp700I	GAANNNNTTC	1 cut(s)	920
AspLEI	GCGC	2 cut(s)	37, 164
AspS9I	GGNCC	4 cut(s)	393, 590, 853, 910
AsuC2I	CCSGG	2 cut(s)	361, 391
AsuHPI	GGTGA	2 cut(s)	163, 352
AvaII	GGWCC	4 cut(s)	393, 590, 853, 910
BaeGI	GKGCMC	1 cut(s)	862
BanI	GGYRCC	1 cut(s)	34
BanII	GRGCYC	1 cut(s)	745
Bbv12I	GWGCWC	2 cut(s)	745, 862
BbvCI	CCTCAGC	3 cut(s)	62, 70, 300
BbvI	GCAGC	2 cut(s)	249, 639
BccI	CCATC	4 cut(s)	27, 89, 422, 829
BceAI	ACGGC	2 cut(s)	164, 957
BciT130I	CCWGG	2 cut(s)	538, 973
BcnI	CCSGG	2 cut(s)	361, 391
BcoDI	GTCTC	1 cut(s)	9
BcuI	ACTAGT	1 cut(s)	955
BfaI	CTAG	3 cut(s)	494, 620, 956
BfoI	RGCGCY	2 cut(s)	38, 165
BfrI	CTTAAG	1 cut(s)	883
BisI	GCNGC	7 cut(s)	93, 189, 263, 288, 297, 357, 653
BlsI	GCNGC	7 cut(s)	94, 190, 264, 289, 298, 358, 654
Bme1390I	CCNGG	4 cut(s)	361, 391, 538, 973
Bme18I	GGWCC	4 cut(s)	393, 590, 853, 910
BmgBI	CACGTC	1 cut(s)	211
BmgT120I	GGNCC	4 cut(s)	393, 590, 853, 910
BmiI	GGNNCC	5 cut(s)	36, 394, 633, 773, 970
BmrFI	CCNGG	4 cut(s)	361, 391, 538, 973
BmrI	ACTGGG	1 cut(s)	524
BmsI	GCATC	4 cut(s)	376, 508, 613, 661
BmuI	ACTGGG	1 cut(s)	524
BpmI	CTGGAG	1 cut(s)	582
Bpu10I	CCTNAGC	3 cut(s)	62, 70, 300
BpuMI	CCSGG	2 cut(s)	361, 391
BsaHI	GRCGYC	1 cut(s)	35
BsaJI	CCNNGG	5 cut(s)	360, 537, 849, 867, 906
BsaWI	WCCGGW	1 cut(s)	457
Bsc4I	CCNNNNNNNGG	3 cut(s)	148, 827, 850
Bse1I	ACTGG	2 cut(s)	234, 530
Bse3DI	GCAATG	1 cut(s)	257
BseBI	CCWGG	2 cut(s)	538, 973
BseDI	CCNNGG	5 cut(s)	360, 537, 849, 867, 906
BseGI	GGATG	5 cut(s)	19, 433, 523, 676, 877
BseLI	CCNNNNNNNGG	3 cut(s)	148, 827, 850
BseMI	GCAATG	1 cut(s)	257
BseMII	CTCAG	3 cut(s)	76, 84, 291
BseNI	ACTGG	2 cut(s)	234, 530
BseRI	GAGGAG	3 cut(s)	50, 58, 338
BseSI	GKGCMC	1 cut(s)	862
BseXI	GCAGC	2 cut(s)	249, 639
BshFI	GGCC	2 cut(s)	356, 843
BshNI	GGYRCC	1 cut(s)	34
BsiHKAI	GWGCWC	2 cut(s)	745, 862
BsiSI	CCGG	3 cut(s)	360, 390, 458
BslFI	GGGAC	2 cut(s)	406, 590
BslI	CCNNNNNNNGG	3 cut(s)	148, 827, 850
BsmAI	GTCTC	1 cut(s)	9
BsmFI	GGGAC	2 cut(s)	406, 590
BsmI	GAATGC	2 cut(s)	284, 884
BsnI	GGCC	2 cut(s)	356, 843
Bsp1286I	GDGCHC	2 cut(s)	745, 862
Bsp143I	GATC	4 cut(s)	205, 327, 637, 891
BspACI	CCGC	9 cut(s)	51, 90, 93, 132, 189, 287, 296, 357, 585
BspANI	GGCC	2 cut(s)	356, 843
BspCNI	CTCAG	3 cut(s)	75, 83, 292
BspLI	GGNNCC	5 cut(s)	36, 394, 633, 773, 970
BspPI	GGATC	2 cut(s)	632, 899
BspQI	GCTCTTC	1 cut(s)	974
BspT107I	GGYRCC	1 cut(s)	34
BspTI	CTTAAG	1 cut(s)	883
BsrDI	GCAATG	1 cut(s)	257
BsrI	ACTGG	2 cut(s)	234, 530
BssECI	CCNNGG	5 cut(s)	360, 537, 849, 867, 906
BssMI	GATC	4 cut(s)	205, 327, 637, 891
BssNI	GRCGYC	1 cut(s)	35
BssT1I	CCWWGG	1 cut(s)	867
Bst2UI	CCWGG	2 cut(s)	538, 973
Bst4CI	ACNGT	3 cut(s)	151, 781, 857
Bst6I	CTCTTC	2 cut(s)	217, 974
BstACI	GRCGYC	1 cut(s)	35
BstAFI	CTTAAG	1 cut(s)	883
BstAPI	GCANNNNNTGC	1 cut(s)	902
BstDEI	CTNAG	3 cut(s)	62, 70, 300
BstF5I	GGATG	5 cut(s)	19, 433, 523, 676, 877
BstH2I	RGCGCY	2 cut(s)	38, 165
BstHHI	GCGC	2 cut(s)	37, 164
BstKTI	GATC	4 cut(s)	208, 330, 640, 894
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	4 cut(s)	205, 327, 637, 891
BstMWI	GCNNNNNNNGC	6 cut(s)	185, 262, 293, 296, 840, 902
BstNI	CCWGG	2 cut(s)	538, 973
BstSCI	CCNGG	4 cut(s)	359, 389, 536, 971
BstSLI	GKGCMC	1 cut(s)	862
BstV1I	GCAGC	2 cut(s)	249, 639
BstXI	CCANNNNNNTGG	1 cut(s)	537
BsuRI	GGCC	2 cut(s)	356, 843
BtrI	CACGTC	1 cut(s)	211
BtsCI	GGATG	5 cut(s)	19, 433, 523, 676, 877
BtsI	GCAGTG	1 cut(s)	251
BtsIMutI	CAGTG	3 cut(s)	190, 251, 537
CfoI	GCGC	2 cut(s)	37, 164
Cfr13I	GGNCC	4 cut(s)	393, 590, 853, 910
CpoI	CGGWCCG	1 cut(s)	853
CspI	CGGWCCG	1 cut(s)	853
CviAII	CATG	3 cut(s)	383, 547, 835
DdeI	CTNAG	3 cut(s)	62, 70, 300
DinI	GGCGCC	1 cut(s)	36
DpnI	GATC	4 cut(s)	207, 329, 639, 893
DpnII	GATC	4 cut(s)	205, 327, 637, 891
Eam1104I	CTCTTC	2 cut(s)	217, 974
EarI	CTCTTC	2 cut(s)	217, 974
Ecl136II	GAGCTC	1 cut(s)	743
Eco130I	CCWWGG	1 cut(s)	867
Eco24I	GRGCYC	1 cut(s)	745
Eco47I	GGWCC	4 cut(s)	393, 590, 853, 910
Eco53kI	GAGCTC	1 cut(s)	743
Eco57I	CTGAAG	5 cut(s)	180, 663, 678, 704, 810
EcoICRI	GAGCTC	1 cut(s)	743
EcoO109I	RGGNCCY	1 cut(s)	393
EcoRI	GAATTC	1 cut(s)	961
EcoRII	CCWGG	2 cut(s)	536, 971
EcoT14I	CCWWGG	1 cut(s)	867
EcoT38I	GRGCYC	1 cut(s)	745
EgeI	GGCGCC	1 cut(s)	36
EheI	GGCGCC	1 cut(s)	36
ErhI	CCWWGG	1 cut(s)	867
FaeI	CATG	3 cut(s)	386, 550, 838
FalI	AAGNNNNNCTT	2 cut(s)	677, 709
FaqI	GGGAC	2 cut(s)	406, 590
FatI	CATG	3 cut(s)	382, 546, 834
FauI	CCCGC	2 cut(s)	97, 139
Fnu4HI	GCNGC	7 cut(s)	93, 189, 263, 288, 297, 357, 653
FokI	GGATG	5 cut(s)	6, 440, 530, 683, 884
FriOI	GRGCYC	1 cut(s)	745
Fsp4HI	GCNGC	7 cut(s)	93, 189, 263, 288, 297, 357, 653
FspBI	CTAG	3 cut(s)	494, 620, 956
GlaI	GCGC	2 cut(s)	36, 163
GluI	GCNGC	7 cut(s)	93, 189, 263, 288, 297, 357, 653
GsuI	CTGGAG	1 cut(s)	582
HaeII	RGCGCY	2 cut(s)	38, 165
HaeIII	GGCC	2 cut(s)	356, 843
HapII	CCGG	3 cut(s)	360, 390, 458
HhaI	GCGC	2 cut(s)	37, 164
Hin1I	GRCGYC	1 cut(s)	35
Hin1II	CATG	3 cut(s)	386, 550, 838
Hin6I	GCGC	2 cut(s)	35, 162
HinP1I	GCGC	2 cut(s)	35, 162
HincII	GTYRAC	1 cut(s)	714
HindII	GTYRAC	1 cut(s)	714
HindIII	AAGCTT	1 cut(s)	691
HinfI	GANTC	1 cut(s)	490
HpaII	CCGG	3 cut(s)	360, 390, 458
HphI	GGTGA	2 cut(s)	163, 352
Hpy166II	GTNNAC	3 cut(s)	526, 714, 860
Hpy188I	TCNGA	2 cut(s)	684, 853
Hpy188III	TCNNGA	9 cut(s)	331, 487, 494, 641, 668, 738, 769, 937, 966
Hpy8I	GTNNAC	3 cut(s)	526, 714, 860
HpyAV	CCTTC	7 cut(s)	64, 286, 313, 328, 340, 638, 854
HpyCH4III	ACNGT	3 cut(s)	151, 781, 857
HpyCH4IV	ACGT	2 cut(s)	210, 920
HpyCH4V	TGCA	4 cut(s)	282, 521, 626, 860
HpyF10VI	GCNNNNNNNGC	6 cut(s)	185, 262, 293, 296, 840, 902
HpyF3I	CTNAG	3 cut(s)	62, 70, 300
HpySE526I	ACGT	2 cut(s)	210, 920
Hsp92I	GRCGYC	1 cut(s)	35
Hsp92II	CATG	3 cut(s)	386, 550, 838
HspAI	GCGC	2 cut(s)	35, 162
KasI	GGCGCC	1 cut(s)	34
Kzo9I	GATC	4 cut(s)	205, 327, 637, 891
LguI	GCTCTTC	1 cut(s)	974
LmnI	GCTCC	5 cut(s)	71, 563, 631, 740, 968
Lsp1109I	GCAGC	2 cut(s)	249, 639
LweI	GCATC	4 cut(s)	376, 508, 613, 661
MaeI	CTAG	3 cut(s)	494, 620, 956
MaeII	ACGT	2 cut(s)	210, 920
MaeIII	GTNAC	1 cut(s)	340
MalI	GATC	4 cut(s)	207, 329, 639, 893
MboI	GATC	4 cut(s)	205, 327, 637, 891
MboII	GAAGA	4 cut(s)	234, 671, 816, 941
MhlI	GDGCHC	2 cut(s)	745, 862
MluCI	AATT	5 cut(s)	154, 402, 412, 804, 961
Mly113I	GGCGCC	1 cut(s)	35
MmeI	TCCRAC	1 cut(s)	617
MroXI	GAANNNNTTC	1 cut(s)	920
MseI	TTAA	2 cut(s)	474, 884
MspA1I	CMGCKG	1 cut(s)	287
MspCI	CTTAAG	1 cut(s)	883
MspI	CCGG	3 cut(s)	360, 390, 458
MspR9I	CCNGG	4 cut(s)	361, 391, 538, 973
Mva1269I	GAATGC	2 cut(s)	284, 884
MvaI	CCWGG	2 cut(s)	538, 973
MwoI	GCNNNNNNNGC	6 cut(s)	185, 262, 293, 296, 840, 902
NarI	GGCGCC	1 cut(s)	35
NciI	CCSGG	2 cut(s)	361, 391
NdeII	GATC	4 cut(s)	205, 327, 637, 891
NlaIII	CATG	3 cut(s)	386, 550, 838
NlaIV	GGNNCC	5 cut(s)	36, 394, 633, 773, 970
NmeAIII	GCCGAG	1 cut(s)	931
NmuCI	GTSAC	1 cut(s)	340
PciSI	GCTCTTC	1 cut(s)	974
PcsI	WCGNNNNNNNCGW	1 cut(s)	110
PctI	GAATGC	2 cut(s)	284, 884
PdmI	GAANNNNTTC	1 cut(s)	920
PfeI	GAWTC	1 cut(s)	490
PkrI	GCNGC	7 cut(s)	94, 190, 264, 289, 298, 358, 654
PluTI	GGCGCC	1 cut(s)	38
PpuMI	RGGWCCY	1 cut(s)	393
Psp124BI	GAGCTC	1 cut(s)	745
Psp5II	RGGWCCY	1 cut(s)	393
Psp6I	CCWGG	2 cut(s)	536, 971
PspGI	CCWGG	2 cut(s)	536, 971
PspN4I	GGNNCC	5 cut(s)	36, 394, 633, 773, 970
PspPI	GGNCC	4 cut(s)	393, 590, 853, 910
PspPPI	RGGWCCY	1 cut(s)	393
PsrI	GAACNNNNNNTAC	2 cut(s)	415, 447
Rsr2I	CGGWCCG	1 cut(s)	853
RsrII	CGGWCCG	1 cut(s)	853
SacI	GAGCTC	1 cut(s)	745
SapI	GCTCTTC	1 cut(s)	974
SaqAI	TTAA	2 cut(s)	474, 884
SatI	GCNGC	7 cut(s)	93, 189, 263, 288, 297, 357, 653
Sau3AI	GATC	4 cut(s)	205, 327, 637, 891
Sau96I	GGNCC	4 cut(s)	393, 590, 853, 910
ScrFI	CCNGG	4 cut(s)	361, 391, 538, 973
SduI	GDGCHC	2 cut(s)	745, 862
SfaNI	GCATC	4 cut(s)	376, 508, 613, 661
SfoI	GGCGCC	1 cut(s)	36
SinI	GGWCC	4 cut(s)	393, 590, 853, 910
SmlI	CTYRAG	1 cut(s)	883
SmoI	CTYRAG	1 cut(s)	883
SpeI	ACTAGT	1 cut(s)	955
Sse9I	AATT	5 cut(s)	154, 402, 412, 804, 961
SsiI	CCGC	9 cut(s)	51, 90, 93, 132, 189, 287, 296, 357, 585
SspDI	GGCGCC	1 cut(s)	34
SspMI	CTAG	3 cut(s)	494, 620, 956
SstI	GAGCTC	1 cut(s)	745
StyD4I	CCNGG	4 cut(s)	359, 389, 536, 971
StyI	CCWWGG	1 cut(s)	867
TaaI	ACNGT	3 cut(s)	151, 781, 857
TaiI	ACGT	2 cut(s)	213, 923
TaqI	TCGA	1 cut(s)	786
TasI	AATT	5 cut(s)	154, 402, 412, 804, 961
TauI	GCSGC	5 cut(s)	95, 191, 290, 299, 359
TfiI	GAWTC	1 cut(s)	490
Tru1I	TTAA	2 cut(s)	474, 884
Tru9I	TTAA	2 cut(s)	474, 884
TscAI	CASTG	3 cut(s)	190, 258, 537
TseFI	GTSAC	1 cut(s)	340
TseI	GCWGC	2 cut(s)	262, 652
Tsp45I	GTSAC	1 cut(s)	340
TspDTI	ATGAA	5 cut(s)	112, 291, 332, 459, 891
TspGWI	ACGGA	1 cut(s)	12
TspRI	CASTG	3 cut(s)	190, 258, 537
Vha464I	CTTAAG	1 cut(s)	883
VneI	GTGCAC	1 cut(s)	858
VpaK11BI	GGWCC	4 cut(s)	393, 590, 853, 910
XapI	RAATTY	3 cut(s)	154, 804, 961
XbaI	TCTAGA	1 cut(s)	493
XmnI	GAANNNNTTC	1 cut(s)	920
XspI	CTAG	3 cut(s)	494, 620, 956

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.