Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004715

Physical Location & Seq

Genomic Coordinates Reverse (-)

42481519 .. 42488085

Gene Structure 6567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0277200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGCAGATCCAACAGAAAAGAAACCACCGGGAAGCCACCATGTCTGGCCTTCCCCGGTCTTCAAGTGCTCCGCTAAAGAATGGCCTTCCTCCCCAGGAACTCCTTGATGATCTCTGCAGTCGGTTTGTTCTAAACGTTCCAAAAGAAGACCTACAATCATTTGAGAGGATTTTATTTCTAGTGGAGTATGCTCATTGGTTTTATGAAGACAACTCAGTGGAGAAAAATCCATCGCTGAAGTCATTTAATTTGAAGGAGTTTACTTCTTTATTGTTTAACAGCTGTGATGTTCTTAAACCTTATGTTGCCCATATAGACGACATATTTAAGGACTTCACTTCTTACAAGGTTAAGGTTCCTGTAACTGGAGCAATCATTTTGGATGAAACCTATGAAAGGTGCATACTAGTGAAGGGATGGAAAGGATCAAGCTGGAGTTTTCCTCGTGGCAAAAAGAACAAAGACGAGGAAGACCATGCATGTGCCATCAGAGAAGTCCATGAAGAAACAGGATTTGATGTTACTAAACTTCTTAAAATAGATGATTACATTGAAGTTATATTTGGACAGCAAAGGGTGCGACTCTACATTATTGCTGGTGTAAGGGAAGATACAGCCTTTGCACCACTCACCAAAAAGGAGATCAGTGAAATTGCATGGCATCGGCTGGATGATCTTCAGCCAGCAAGTGATGATGTGATATCCCGTGGTATCACCGGCCTCAAGCTTTACATGGTGTCACCTTTTCTGGCATCGTTGAAGTCATGGATCTTTAAACATCAGCCCCCAACTGCTCCAAGACCTGATATGCCTCTGAGAGGAATCAGTGTGTGGAGAGCAAAAAACAGCTCAATAGGGAGTAGCAACATGATAATGGAGAGCCAATCAACTAAACCTGAACCTGATGTCCATCCTCCTGACATAGGACCTGGCAAGAGCTTCAGAAACTTCAGGTTCAATACTGCTCCAATCTTACAAGCAATGGAAGCTGGTTTCTCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0008017 GO:0008092 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0015631 GO:0032870 GO:0042221 GO:0050896 GO:0051716 GO:0070887 GO:0071310 GO:0071369 GO:0071495

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPX2

Protein Analysis

334

Amino Acids

38.02

Weight (kDa)

6.72

Isoelectric Point (pI)

48.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DCP2	PF05026	33 - 115	3.8e-30	Dcp2, box A domain
NUDIX	PF00293	120 - 232	2.3e-15	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004715)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25480 AT2G25480 AT4G32330 AT4G32330 AT4G32330 AT4G32330
fragaria_vesca	FvH4_2g29090 FvH4_2g29090 FvH4_2g29090
malus_domestica	MD08G1150300.v1.1 MD15G1125300.v1.1
prunus_persica	Prupe.1G480800_v2.0.a1
pyrus_communis	pycom08g12610 pycom15g11290
rosa_chinensis	RchiOBHm_Chr6g0297971
rosa_laevigata	RLG00000011547
rosa_multiflora	Rmu_co8198748.1_g000001 Rmu_sc0007302.1_g000001
rosa_roxburghii	Rroxscaffold_7G00170040 Rroxscaffold_7G00178880
rosa_rugosa	Rorug06G0277200 Rorug06G0277300 Rorug06G0277400 Rorug06G0277500
rosa_samantha	Rh6AG387800 Rh6AG387900 Rh6BG396100 Rh6CG402100 Rh6DG388300
rosa_wichuraiana	Rw6G033780 Rw6G033850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	71
AclI	AACGTT	1 cut(s)	135
AclWI	GGATC	2 cut(s)	433, 776
AcuI	CTGAAG	4 cut(s)	257, 662, 925, 934
AfiI	CCNNNNNNNGG	4 cut(s)	365, 396, 818, 923
AgsI	TTSAA	5 cut(s)	63, 253, 554, 760, 958
AhlI	ACTAGT	1 cut(s)	406
AjnI	CCWGG	2 cut(s)	93, 928
AjuI	GAANNNNNNNTTGG	2 cut(s)	546, 578
AloI	GAACNNNNNNTCC	2 cut(s)	891, 923
AluBI	AGCT	6 cut(s)	282, 432, 727, 849, 939, 989
AluI	AGCT	6 cut(s)	282, 432, 727, 849, 939, 989
Alw21I	GWGCWC	1 cut(s)	70
AlwI	GGATC	2 cut(s)	433, 776
AoxI	GGCC	3 cut(s)	46, 82, 718
AspS9I	GGNCC	1 cut(s)	926
AsuC2I	CCSGG	2 cut(s)	29, 55
AsuHPI	GGTGA	3 cut(s)	622, 706, 732
AvaII	GGWCC	1 cut(s)	926
BauI	CACGAG	1 cut(s)	444
BbsI	GAAGAC	4 cut(s)	51, 153, 213, 477
Bbv12I	GWGCWC	1 cut(s)	70
BccI	CCATC	4 cut(s)	238, 411, 494, 918
BciT130I	CCWGG	2 cut(s)	95, 930
BcnI	CCSGG	2 cut(s)	29, 55
BcuI	ACTAGT	1 cut(s)	406
BfaI	CTAG	2 cut(s)	179, 407
BfmI	CTRYAG	1 cut(s)	115
Bme1390I	CCNGG	4 cut(s)	29, 55, 95, 930
Bme18I	GGWCC	1 cut(s)	926
BmgT120I	GGNCC	1 cut(s)	926
BmiI	GGNNCC	1 cut(s)	357
BmrFI	CCNGG	4 cut(s)	29, 55, 95, 930
BmsI	GCATC	2 cut(s)	670, 761
BpiI	GAAGAC	4 cut(s)	51, 153, 213, 477
BplI	GAGNNNNNCTC	2 cut(s)	427, 459
BpmI	CTGGAG	2 cut(s)	387, 454
BpuEI	CTTGAG	1 cut(s)	707
BpuMI	CCSGG	2 cut(s)	29, 55
BsaBI	GATNNNNATC	1 cut(s)	909
BsaJI	CCNNGG	3 cut(s)	53, 93, 706
Bsc4I	CCNNNNNNNGG	4 cut(s)	365, 396, 818, 923
Bse118I	RCCGGY	1 cut(s)	716
Bse1I	ACTGG	1 cut(s)	370
Bse3DI	GCAATG	1 cut(s)	987
Bse8I	GATNNNNATC	1 cut(s)	909
BseBI	CCWGG	2 cut(s)	95, 930
BseDI	CCNNGG	3 cut(s)	53, 93, 706
BseGI	GGATG	4 cut(s)	388, 422, 676, 910
BseJI	GATNNNNATC	1 cut(s)	909
BseLI	CCNNNNNNNGG	4 cut(s)	365, 396, 818, 923
BseMI	GCAATG	1 cut(s)	987
BseMII	CTCAG	2 cut(s)	228, 806
BseNI	ACTGG	1 cut(s)	370
BshFI	GGCC	3 cut(s)	48, 84, 720
BsiHKAI	GWGCWC	1 cut(s)	70
BsiSI	CCGG	3 cut(s)	28, 55, 717
BslI	CCNNNNNNNGG	4 cut(s)	365, 396, 818, 923
BsnI	GGCC	3 cut(s)	48, 84, 720
Bsp1286I	GDGCHC	1 cut(s)	70
Bsp143I	GATC	6 cut(s)	6, 109, 425, 642, 673, 768
BspACI	CCGC	1 cut(s)	71
BspANI	GGCC	3 cut(s)	48, 84, 720
BspCNI	CTCAG	2 cut(s)	227, 807
BspLI	GGNNCC	1 cut(s)	357
BspMAI	CTGCAG	1 cut(s)	119
BspPI	GGATC	2 cut(s)	433, 776
BsrDI	GCAATG	1 cut(s)	987
BsrFI	RCCGGY	1 cut(s)	716
BsrI	ACTGG	1 cut(s)	370
BssAI	RCCGGY	1 cut(s)	716
BssECI	CCNNGG	3 cut(s)	53, 93, 706
BssMI	GATC	6 cut(s)	6, 109, 425, 642, 673, 768
BssSI	CACGAG	1 cut(s)	444
Bst2BI	CACGAG	1 cut(s)	444
Bst2UI	CCWGG	2 cut(s)	95, 930
BstAPI	GCANNNNNTGC	1 cut(s)	577
BstC8I	GCNNGC	1 cut(s)	684
BstDEI	CTNAG	2 cut(s)	214, 815
BstDSI	CCRYGG	1 cut(s)	706
BstENI	CCTNNNNNAGG	3 cut(s)	394, 816, 921
BstF5I	GGATG	4 cut(s)	388, 422, 676, 910
BstKTI	GATC	6 cut(s)	9, 112, 428, 645, 676, 771
BstMBI	GATC	6 cut(s)	6, 109, 425, 642, 673, 768
BstMWI	GCNNNNNNNGC	2 cut(s)	577, 986
BstNI	CCWGG	2 cut(s)	95, 930
BstNSI	RCATGY	1 cut(s)	483
BstSCI	CCNGG	4 cut(s)	27, 53, 93, 928
BstSFI	CTRYAG	1 cut(s)	115
BstV2I	GAAGAC	4 cut(s)	51, 153, 213, 477
BstX2I	RGATCY	2 cut(s)	6, 768
BstYI	RGATCY	2 cut(s)	6, 768
BsuRI	GGCC	3 cut(s)	48, 84, 720
BtgI	CCRYGG	1 cut(s)	706
BtgZI	GCGATG	1 cut(s)	216
BtsCI	GGATG	4 cut(s)	388, 422, 676, 910
BtsIMutI	CAGTG	3 cut(s)	222, 652, 832
Cac8I	GCNNGC	1 cut(s)	684
Cfr10I	RCCGGY	1 cut(s)	716
Cfr13I	GGNCC	1 cut(s)	926
CviAII	CATG	8 cut(s)	40, 476, 480, 500, 657, 733, 765, 868
DdeI	CTNAG	2 cut(s)	214, 815
DpnI	GATC	6 cut(s)	8, 111, 427, 644, 675, 770
DpnII	GATC	6 cut(s)	6, 109, 425, 642, 673, 768
DraI	TTTAAA	1 cut(s)	775
Eco32I	GATATC	1 cut(s)	702
Eco47I	GGWCC	1 cut(s)	926
Eco57I	CTGAAG	4 cut(s)	257, 662, 925, 934
EcoNI	CCTNNNNNAGG	3 cut(s)	394, 816, 921
EcoO109I	RGGNCCY	1 cut(s)	926
EcoRII	CCWGG	2 cut(s)	93, 928
EcoRV	GATATC	1 cut(s)	702
EcoT22I	ATGCAT	1 cut(s)	481
FaeI	CATG	8 cut(s)	43, 479, 483, 503, 660, 736, 768, 871
FatI	CATG	8 cut(s)	39, 475, 479, 499, 656, 732, 764, 867
FokI	GGATG	4 cut(s)	395, 429, 683, 897
FspBI	CTAG	2 cut(s)	179, 407
GsuI	CTGGAG	2 cut(s)	387, 454
HaeIII	GGCC	3 cut(s)	48, 84, 720
HapII	CCGG	3 cut(s)	28, 55, 717
Hin1II	CATG	8 cut(s)	43, 479, 483, 503, 660, 736, 768, 871
HindIII	AAGCTT	1 cut(s)	725
HinfI	GANTC	2 cut(s)	582, 822
HpaII	CCGG	3 cut(s)	28, 55, 717
HphI	GGTGA	3 cut(s)	622, 706, 732
Hpy166II	GTNNAC	1 cut(s)	261
Hpy188I	TCNGA	3 cut(s)	491, 816, 944
Hpy188III	TCNNGA	1 cut(s)	917
Hpy8I	GTNNAC	1 cut(s)	261
HpyAV	CCTTC	4 cut(s)	59, 95, 247, 406
HpyCH4IV	ACGT	1 cut(s)	135
HpyCH4V	TGCA	6 cut(s)	4, 117, 402, 479, 623, 656
HpyF10VI	GCNNNNNNNGC	2 cut(s)	577, 986
HpyF3I	CTNAG	2 cut(s)	214, 815
HpySE526I	ACGT	1 cut(s)	135
Hsp92II	CATG	8 cut(s)	43, 479, 483, 503, 660, 736, 768, 871
Kzo9I	GATC	6 cut(s)	6, 109, 425, 642, 673, 768
LmnI	GCTCC	4 cut(s)	73, 368, 799, 970
LweI	GCATC	2 cut(s)	670, 761
MaeI	CTAG	2 cut(s)	179, 407
MaeII	ACGT	1 cut(s)	135
MaeIII	GTNAC	3 cut(s)	361, 520, 738
MalI	GATC	6 cut(s)	8, 111, 427, 644, 675, 770
MboI	GATC	6 cut(s)	6, 109, 425, 642, 673, 768
MboII	GAAGA	7 cut(s)	51, 158, 218, 482, 515, 620, 668
MflI	RGATCY	2 cut(s)	6, 768
MhlI	GDGCHC	1 cut(s)	70
MluCI	AATT	2 cut(s)	247, 651
MlyI	GAGTC	1 cut(s)	576
MmeI	TCCRAC	1 cut(s)	34
MnlI	CCTC	8 cut(s)	99, 159, 453, 460, 731, 812, 822, 924
Mph1103I	ATGCAT	1 cut(s)	481
MseI	TTAA	7 cut(s)	246, 276, 294, 327, 351, 534, 774
MslI	CAYNNNNRTG	3 cut(s)	407, 480, 872
MspA1I	CMGCKG	1 cut(s)	282
MspI	CCGG	3 cut(s)	28, 55, 717
MspR9I	CCNGG	4 cut(s)	29, 55, 95, 930
MvaI	CCWGG	2 cut(s)	95, 930
MwoI	GCNNNNNNNGC	2 cut(s)	577, 986
NciI	CCSGG	2 cut(s)	29, 55
NdeII	GATC	6 cut(s)	6, 109, 425, 642, 673, 768
NlaIII	CATG	8 cut(s)	43, 479, 483, 503, 660, 736, 768, 871
NlaIV	GGNNCC	1 cut(s)	357
NmuCI	GTSAC	1 cut(s)	738
NsiI	ATGCAT	1 cut(s)	481
NspI	RCATGY	1 cut(s)	483
PfeI	GAWTC	1 cut(s)	822
PleI	GAGTC	1 cut(s)	576
PpsI	GAGTC	1 cut(s)	576
PpuMI	RGGWCCY	1 cut(s)	926
Psp1406I	AACGTT	1 cut(s)	135
Psp5II	RGGWCCY	1 cut(s)	926
Psp6I	CCWGG	2 cut(s)	93, 928
PspGI	CCWGG	2 cut(s)	93, 928
PspN4I	GGNNCC	1 cut(s)	357
PspPI	GGNCC	1 cut(s)	926
PspPPI	RGGWCCY	1 cut(s)	926
PstI	CTGCAG	1 cut(s)	119
PsuI	RGATCY	2 cut(s)	6, 768
PvuII	CAGCTG	1 cut(s)	282
RseI	CAYNNNNRTG	3 cut(s)	407, 480, 872
SaqAI	TTAA	7 cut(s)	246, 276, 294, 327, 351, 534, 774
Sau3AI	GATC	6 cut(s)	6, 109, 425, 642, 673, 768
Sau96I	GGNCC	1 cut(s)	926
SchI	GAGTC	1 cut(s)	576
ScrFI	CCNGG	4 cut(s)	29, 55, 95, 930
SduI	GDGCHC	1 cut(s)	70
SfaNI	GCATC	2 cut(s)	670, 761
SfcI	CTRYAG	1 cut(s)	115
SinI	GGWCC	1 cut(s)	926
SmiMI	CAYNNNNRTG	3 cut(s)	407, 480, 872
SmlI	CTYRAG	1 cut(s)	722
SmoI	CTYRAG	1 cut(s)	722
SpeI	ACTAGT	1 cut(s)	406
Sse9I	AATT	2 cut(s)	247, 651
SsiI	CCGC	1 cut(s)	71
SspMI	CTAG	2 cut(s)	179, 407
StyD4I	CCNGG	4 cut(s)	27, 53, 93, 928
TaiI	ACGT	1 cut(s)	138
TasI	AATT	2 cut(s)	247, 651
TfiI	GAWTC	1 cut(s)	822
Tru1I	TTAA	7 cut(s)	246, 276, 294, 327, 351, 534, 774
Tru9I	TTAA	7 cut(s)	246, 276, 294, 327, 351, 534, 774
TscAI	CASTG	3 cut(s)	222, 652, 832
TseFI	GTSAC	1 cut(s)	738
Tsp45I	GTSAC	1 cut(s)	738
TspDTI	ATGAA	4 cut(s)	219, 399, 408, 516
TspRI	CASTG	3 cut(s)	222, 652, 832
VpaK11BI	GGWCC	1 cut(s)	926
XagI	CCTNNNNNAGG	3 cut(s)	394, 816, 921
XceI	RCATGY	1 cut(s)	483
XspI	CTAG	2 cut(s)	179, 407
Zsp2I	ATGCAT	1 cut(s)	481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.