Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0004715

Physical Location & Seq

Genomic Coordinates Reverse (-)

11085028 .. 11087937

Gene Structure 2910 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g12610.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1284 bp

ATGAATGGGACCTTCAGCGAGAATGCTATGACGGAGACTGCAGCATCAAGTGGGAAAATTGGAAATGCTGATAAGGTGGATGACGGTGGGACTAATAGCTCATCTGTTTGGGAAGCTATAGAGGCCAATGTCAACCCTGAAAGTAATGGTTTGACTGTTGCTTTGACTATTGAAGATGAAGTGAAAGGTTCTACTCATTCAAAGCCCGCCAAAGTGCATAAAGGTCCAGGTAAGAGCAAGAATGAGAAGGCCCCTGGTCCCAAGAGTGTCTCCCCAACTTTGATGAAGAAAAGCAAAGATGGAAATGGCACAGAGGCAAAAGCTTCTGTTTCAAATGGTTCAGCTGCTTCAAATTCACGCCCGAAACAGCCTAACAAGAATAGATCATTTAATGGGAGACAGGTTCAGTCATCCAATCAACCTGAAAAACTTGATGCAGAATTGTCTGAAGGCAGTGTGGAGAAGGCGAAGCTGAAGCCTTTGAAAAAAGGCTCCCAGAATCAGGCTGAAGGAGAATCACAATCCTCTTTAAGTCCAACAGAAGGAGATAAACAGCCTAGGGTTGGGACACTTCCGAAATATGGTTTCAGTTTTAGGTGCGATGAACGAGCTGAGAAAAGGAGAGAGTTCTATACTAAACTGGAGGAAAAGATACATGCAAAGGAGATGGAGAAGAATAATTTGCAAGCCAAGTCCGAGGAAACTCTGGAAGCTGAGATTAGGATGCTCAGGAAGAAACTGACTTTTAAAGCAACTCCAATGCCAAGCTTCTATCAGGAGCCTCCACCTCCTAAAGTGGAGCTGAAGAAGATACCAACTACAAGAGCCAAGTCTCCCAAGCTCGGACGTAGGAAGAGCTTACCTCCTGCAGTTTCTGAAGCACACGGTAATACCAATGGTCGATCTAGCAGGCTTAGTCTGGATGAGAAAGTACCTCAGAACACTGCTAAAGGGCCCTCTCCTGTGCATCCAAAGAAGCCACAACGGAAGTCTCTTCCTAGACTCCCGTCTGAGAAGACCACTTTACCAAATGTGGTGAATGAGCCAAAAACGACTTCTAAGGCAGTAAATGAGGAAAAGACCAACTTAATTGCTGCAATGATTGAGGAGAATGCCACCGTGCCCACTGCAGAAAGTGAAGCTGGATCTCACACCCAAGAGGAGGAGGCAGCAGTTCCCAAGGCCGAGGTAAGCAAAGAGCAGTCCCATACAGATGACGAGACAGCGGATGAAGACCAACACCAGCCCGTCTATGTTCAAGAACCTATAACCTCGGAGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0008017 GO:0008092 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0015631 GO:0032870 GO:0042221 GO:0050896 GO:0051716 GO:0070887 GO:0071310 GO:0071369 GO:0071495

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPX2

Protein Analysis

428

Amino Acids

46.4

Weight (kDa)

8.96

Isoelectric Point (pI)

51.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004715)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25480 AT2G25480 AT4G32330 AT4G32330 AT4G32330 AT4G32330
fragaria_vesca	FvH4_2g29090 FvH4_2g29090 FvH4_2g29090
malus_domestica	MD08G1150300.v1.1 MD15G1125300.v1.1
prunus_persica	Prupe.1G480800_v2.0.a1
pyrus_communis	pycom08g12610 pycom15g11290
rosa_chinensis	RchiOBHm_Chr6g0297971
rosa_laevigata	RLG00000011547
rosa_multiflora	Rmu_co8198748.1_g000001 Rmu_sc0007302.1_g000001
rosa_roxburghii	Rroxscaffold_7G00170040 Rroxscaffold_7G00178880
rosa_rugosa	Rorug06G0277200 Rorug06G0277300 Rorug06G0277400 Rorug06G0277500
rosa_samantha	Rh6AG387800 Rh6AG387900 Rh6BG396100 Rh6CG402100 Rh6DG388300
rosa_wichuraiana	Rw6G033780 Rw6G033850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	207, 1226
AclWI	GGATC	1 cut(s)	1153
AcsI	RAATTY	1 cut(s)	352
AcuI	CTGAAG	5 cut(s)	468, 494, 528, 824, 897
AfaI	GTAC	1 cut(s)	933
AfiI	CCNNNNNNNGG	6 cut(s)	502, 542, 563, 581, 842, 1162
AgsI	TTSAA	6 cut(s)	173, 201, 333, 351, 484, 1259
AjnI	CCWGG	2 cut(s)	226, 253
AjuI	GAANNNNNNNTTGG	2 cut(s)	1039, 1071
Alw26I	GTCTC	6 cut(s)	29, 274, 391, 837, 996, 1214
AlwI	GGATC	1 cut(s)	1153
AlwNI	CAGNNNCTG	1 cut(s)	875
AoxI	GGCC	4 cut(s)	123, 249, 953, 1182
ApaI	GGGCCC	1 cut(s)	957
ApeKI	GCWGC	4 cut(s)	41, 344, 1094, 1169
ApoI	RAATTY	1 cut(s)	352
ArsI	GACNNNNNNTTYG	2 cut(s)	145, 177
AspA2I	CCTAGG	1 cut(s)	557
AspS9I	GGNCC	6 cut(s)	9, 224, 250, 257, 953, 954
AsuHPI	GGTGA	1 cut(s)	1048
AvaII	GGWCC	3 cut(s)	9, 224, 257
AvrII	CCTAGG	1 cut(s)	557
BaeGI	GKGCMC	2 cut(s)	957, 1125
BanII	GRGCYC	1 cut(s)	957
BbsI	GAAGAC	2 cut(s)	1022, 1239
BbvI	GCAGC	4 cut(s)	53, 331, 1081, 1181
BccI	CCATC	2 cut(s)	293, 661
BciT130I	CCWGG	2 cut(s)	228, 255
BcoDI	GTCTC	6 cut(s)	29, 274, 391, 837, 996, 1214
BfaI	CTAG	3 cut(s)	558, 906, 999
BfmI	CTRYAG	4 cut(s)	39, 117, 867, 1128
BisI	GCNGC	4 cut(s)	42, 345, 1095, 1170
BlnI	CCTAGG	1 cut(s)	557
BlsI	GCNGC	4 cut(s)	43, 346, 1096, 1171
Bme1390I	CCNGG	2 cut(s)	228, 255
Bme18I	GGWCC	3 cut(s)	9, 224, 257
BmgT120I	GGNCC	6 cut(s)	9, 224, 250, 257, 953, 954
BmiI	GGNNCC	6 cut(s)	10, 252, 259, 493, 780, 955
BmrFI	CCNGG	2 cut(s)	228, 255
BmsI	GCATC	4 cut(s)	53, 424, 714, 976
BoxI	GACNNNNGTC	1 cut(s)	1006
BpiI	GAAGAC	2 cut(s)	1022, 1239
BplI	GAGNNNNNCTC	2 cut(s)	847, 879
BpmI	CTGGAG	1 cut(s)	662
Bpu10I	CCTNAGC	1 cut(s)	728
BsaJI	CCNNGG	6 cut(s)	253, 557, 696, 1179, 1185, 1272
Bsc4I	CCNNNNNNNGG	6 cut(s)	502, 542, 563, 581, 842, 1162
Bse1I	ACTGG	1 cut(s)	645
Bse3DI	GCAATG	1 cut(s)	1104
BseBI	CCWGG	2 cut(s)	228, 255
BseDI	CCNNGG	6 cut(s)	253, 557, 696, 1179, 1185, 1272
BseGI	GGATG	6 cut(s)	85, 410, 729, 928, 967, 1234
BseLI	CCNNNNNNNGG	6 cut(s)	502, 542, 563, 581, 842, 1162
BseMI	GCAATG	1 cut(s)	1104
BseMII	CTCAG	5 cut(s)	603, 705, 742, 950, 1002
BseNI	ACTGG	1 cut(s)	645
BseRI	GAGGAG	3 cut(s)	1121, 1175, 1178
BseSI	GKGCMC	2 cut(s)	957, 1125
BseXI	GCAGC	4 cut(s)	53, 331, 1081, 1181
BshFI	GGCC	4 cut(s)	125, 251, 955, 1184
BslFI	GGGAC	5 cut(s)	22, 103, 243, 580, 1189
BslI	CCNNNNNNNGG	6 cut(s)	502, 542, 563, 581, 842, 1162
BsmAI	GTCTC	6 cut(s)	29, 274, 391, 837, 996, 1214
BsmFI	GGGAC	5 cut(s)	22, 103, 243, 580, 1189
BsmI	GAATGC	2 cut(s)	28, 1117
BsnI	GGCC	4 cut(s)	125, 251, 955, 1184
Bsp120I	GGGCCC	1 cut(s)	953
Bsp1286I	GDGCHC	2 cut(s)	957, 1125
Bsp143I	GATC	3 cut(s)	383, 902, 1145
BspACI	CCGC	2 cut(s)	207, 1226
BspANI	GGCC	4 cut(s)	125, 251, 955, 1184
BspCNI	CTCAG	5 cut(s)	604, 706, 741, 949, 1003
BspLI	GGNNCC	6 cut(s)	10, 252, 259, 493, 780, 955
BspMAI	CTGCAG	3 cut(s)	43, 871, 1132
BspPI	GGATC	1 cut(s)	1153
BspQI	GCTCTTC	1 cut(s)	848
BsrDI	GCAATG	1 cut(s)	1104
BsrI	ACTGG	1 cut(s)	645
BssECI	CCNNGG	6 cut(s)	253, 557, 696, 1179, 1185, 1272
BssMI	GATC	3 cut(s)	383, 902, 1145
BssT1I	CCWWGG	2 cut(s)	557, 1179
Bst2UI	CCWGG	2 cut(s)	228, 255
Bst4CI	ACNGT	4 cut(s)	86, 157, 887, 1120
Bst6I	CTCTTC	2 cut(s)	848, 999
BstC8I	GCNNGC	3 cut(s)	207, 687, 911
BstDEI	CTNAG	7 cut(s)	612, 714, 728, 914, 936, 1011, 1059
BstF5I	GGATG	6 cut(s)	85, 410, 729, 928, 967, 1234
BstKTI	GATC	3 cut(s)	386, 905, 1148
BstMAI	GTCTC	6 cut(s)	29, 274, 391, 837, 996, 1214
BstMBI	GATC	3 cut(s)	383, 902, 1145
BstMWI	GCNNNNNNNGC	1 cut(s)	122
BstNI	CCWGG	2 cut(s)	228, 255
BstNSI	RCATGY	1 cut(s)	659
BstPAI	GACNNNNGTC	1 cut(s)	1006
BstSCI	CCNGG	2 cut(s)	226, 253
BstSFI	CTRYAG	4 cut(s)	39, 117, 867, 1128
BstSLI	GKGCMC	2 cut(s)	957, 1125
BstV1I	GCAGC	4 cut(s)	53, 331, 1081, 1181
BstV2I	GAAGAC	2 cut(s)	1022, 1239
BstX2I	RGATCY	1 cut(s)	1145
BstYI	RGATCY	1 cut(s)	1145
BsuRI	GGCC	4 cut(s)	125, 251, 955, 1184
BtgZI	GCGATG	1 cut(s)	615
BtsCI	GGATG	6 cut(s)	85, 410, 729, 928, 967, 1234
BtsI	GCAGTG	3 cut(s)	460, 942, 1125
BtsIMutI	CAGTG	3 cut(s)	460, 942, 1125
Cac8I	GCNNGC	3 cut(s)	207, 687, 911
CaiI	CAGNNNCTG	1 cut(s)	875
Cfr13I	GGNCC	6 cut(s)	9, 224, 250, 257, 953, 954
Csp6I	GTAC	1 cut(s)	932
CviAII	CATG	1 cut(s)	656
CviQI	GTAC	1 cut(s)	932
DdeI	CTNAG	7 cut(s)	612, 714, 728, 914, 936, 1011, 1059
DpnI	GATC	3 cut(s)	385, 904, 1147
DpnII	GATC	3 cut(s)	383, 902, 1145
DraI	TTTAAA	1 cut(s)	748
Eam1104I	CTCTTC	2 cut(s)	848, 999
EarI	CTCTTC	2 cut(s)	848, 999
Eco130I	CCWWGG	2 cut(s)	557, 1179
Eco24I	GRGCYC	1 cut(s)	957
Eco47I	GGWCC	3 cut(s)	9, 224, 257
Eco57I	CTGAAG	5 cut(s)	468, 494, 528, 824, 897
EcoO109I	RGGNCCY	4 cut(s)	9, 250, 953, 954
EcoRII	CCWGG	2 cut(s)	226, 253
EcoT14I	CCWWGG	2 cut(s)	557, 1179
EcoT38I	GRGCYC	1 cut(s)	957
ErhI	CCWWGG	2 cut(s)	557, 1179
FaeI	CATG	1 cut(s)	659
FaiI	YATR	9 cut(s)	29, 119, 219, 582, 633, 657, 1209, 1254, 1268
FalI	AAGNNNNNCTT	2 cut(s)	1070, 1102
FaqI	GGGAC	5 cut(s)	22, 103, 243, 580, 1189
FatI	CATG	1 cut(s)	655
FauI	CCCGC	1 cut(s)	214
Fnu4HI	GCNGC	4 cut(s)	42, 345, 1095, 1170
FokI	GGATG	6 cut(s)	92, 397, 736, 935, 954, 1241
FriOI	GRGCYC	1 cut(s)	957
Fsp4HI	GCNGC	4 cut(s)	42, 345, 1095, 1170
FspBI	CTAG	3 cut(s)	558, 906, 999
GluI	GCNGC	4 cut(s)	42, 345, 1095, 1170
GsuI	CTGGAG	1 cut(s)	662
HaeIII	GGCC	4 cut(s)	125, 251, 955, 1184
Hin1II	CATG	1 cut(s)	659
HincII	GTYRAC	1 cut(s)	133
HindII	GTYRAC	1 cut(s)	133
HindIII	AAGCTT	2 cut(s)	321, 766
HinfI	GANTC	3 cut(s)	499, 515, 1002
HphI	GGTGA	1 cut(s)	1048
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188I	TCNGA	8 cut(s)	448, 576, 697, 845, 877, 939, 1012, 1276
Hpy188III	TCNNGA	5 cut(s)	707, 730, 776, 920, 1259
Hpy8I	GTNNAC	1 cut(s)	133
HpyAV	CCTTC	6 cut(s)	22, 241, 443, 457, 503, 536
HpyCH4III	ACNGT	4 cut(s)	86, 157, 887, 1120
HpyCH4IV	ACGT	1 cut(s)	847
HpyCH4V	TGCA	9 cut(s)	41, 217, 437, 659, 685, 869, 967, 1097, 1130
HpyF10VI	GCNNNNNNNGC	1 cut(s)	122
HpyF3I	CTNAG	7 cut(s)	612, 714, 728, 914, 936, 1011, 1059
HpySE526I	ACGT	1 cut(s)	847
Hsp92II	CATG	1 cut(s)	659
Kzo9I	GATC	3 cut(s)	383, 902, 1145
LguI	GCTCTTC	1 cut(s)	848
LmnI	GCTCC	4 cut(s)	497, 778, 799, 1276
Lsp1109I	GCAGC	4 cut(s)	53, 331, 1081, 1181
LweI	GCATC	4 cut(s)	53, 424, 714, 976
MaeI	CTAG	3 cut(s)	558, 906, 999
MaeII	ACGT	1 cut(s)	847
MalI	GATC	3 cut(s)	385, 904, 1147
MboI	GATC	3 cut(s)	383, 902, 1145
MflI	RGATCY	1 cut(s)	1145
MhlI	GDGCHC	2 cut(s)	957, 1125
MluCI	AATT	5 cut(s)	57, 352, 440, 679, 1089
MlyI	GAGTC	1 cut(s)	996
MmeI	TCCRAC	1 cut(s)	560
MseI	TTAA	4 cut(s)	390, 530, 747, 1088
MslI	CAYNNNNRTG	1 cut(s)	1212
MspA1I	CMGCKG	2 cut(s)	344, 1226
MspR9I	CCNGG	2 cut(s)	228, 255
Mva1269I	GAATGC	2 cut(s)	28, 1117
MvaI	CCWGG	2 cut(s)	228, 255
MwoI	GCNNNNNNNGC	1 cut(s)	122
NdeII	GATC	3 cut(s)	383, 902, 1145
NlaIII	CATG	1 cut(s)	659
NlaIV	GGNNCC	6 cut(s)	10, 252, 259, 493, 780, 955
NmeAIII	GCCGAG	1 cut(s)	1210
NspI	RCATGY	1 cut(s)	659
PciSI	GCTCTTC	1 cut(s)	848
PctI	GAATGC	2 cut(s)	28, 1117
PfeI	GAWTC	2 cut(s)	499, 515
PkrI	GCNGC	4 cut(s)	43, 346, 1096, 1171
PleI	GAGTC	1 cut(s)	996
PpsI	GAGTC	1 cut(s)	996
PpuMI	RGGWCCY	1 cut(s)	9
PshAI	GACNNNNGTC	1 cut(s)	1006
Psp5II	RGGWCCY	1 cut(s)	9
Psp6I	CCWGG	2 cut(s)	226, 253
PspGI	CCWGG	2 cut(s)	226, 253
PspN4I	GGNNCC	6 cut(s)	10, 252, 259, 493, 780, 955
PspOMI	GGGCCC	1 cut(s)	953
PspPI	GGNCC	6 cut(s)	9, 224, 250, 257, 953, 954
PspPPI	RGGWCCY	1 cut(s)	9
PstI	CTGCAG	3 cut(s)	43, 871, 1132
PstNI	CAGNNNCTG	1 cut(s)	875
PsuI	RGATCY	1 cut(s)	1145
PvuII	CAGCTG	1 cut(s)	344
RsaI	GTAC	1 cut(s)	933
RsaNI	GTAC	1 cut(s)	932
RseI	CAYNNNNRTG	1 cut(s)	1212
SapI	GCTCTTC	1 cut(s)	848
SaqAI	TTAA	4 cut(s)	390, 530, 747, 1088
SatI	GCNGC	4 cut(s)	42, 345, 1095, 1170
Sau3AI	GATC	3 cut(s)	383, 902, 1145
Sau96I	GGNCC	6 cut(s)	9, 224, 250, 257, 953, 954
SchI	GAGTC	1 cut(s)	996
ScrFI	CCNGG	2 cut(s)	228, 255
SduI	GDGCHC	2 cut(s)	957, 1125
SfaNI	GCATC	4 cut(s)	53, 424, 714, 976
SfcI	CTRYAG	4 cut(s)	39, 117, 867, 1128
SinI	GGWCC	3 cut(s)	9, 224, 257
SmiMI	CAYNNNNRTG	1 cut(s)	1212
Sse9I	AATT	5 cut(s)	57, 352, 440, 679, 1089
SsiI	CCGC	2 cut(s)	207, 1226
SspMI	CTAG	3 cut(s)	558, 906, 999
StyD4I	CCNGG	2 cut(s)	226, 253
StyI	CCWWGG	2 cut(s)	557, 1179
TaaI	ACNGT	4 cut(s)	86, 157, 887, 1120
TaiI	ACGT	1 cut(s)	850
TaqI	TCGA	1 cut(s)	901
TasI	AATT	5 cut(s)	57, 352, 440, 679, 1089
TfiI	GAWTC	2 cut(s)	499, 515
Tru1I	TTAA	4 cut(s)	390, 530, 747, 1088
Tru9I	TTAA	4 cut(s)	390, 530, 747, 1088
TscAI	CASTG	3 cut(s)	460, 949, 1132
TseI	GCWGC	4 cut(s)	41, 344, 1094, 1169
TspDTI	ATGAA	5 cut(s)	17, 192, 299, 618, 1245
TspGWI	ACGGA	2 cut(s)	47, 1000
TspRI	CASTG	3 cut(s)	460, 949, 1132
VpaK11BI	GGWCC	3 cut(s)	9, 224, 257
XapI	RAATTY	1 cut(s)	352
XceI	RCATGY	1 cut(s)	659
XmaJI	CCTAGG	1 cut(s)	557
XspI	CTAG	3 cut(s)	558, 906, 999

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.