Rroxscaffold_7G00178880

Targeting protein for Xklp2 (TPX2)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0004715
Physical Location & Seq
Reverse (-)
18508922 .. 18513344
4423 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00178880.1

Sequence Viewer

Length: 1377 bp
ATGGATTCGGATAATTTGGAAGCCGCCTATGGGCTTCAGGTTGCTCTTGAAAATGGTGGTCATGGGCAACTTAGTGTTGGTCCAGACGGCATTAATGGGAGTGCCGGTGAAACTACTCTTACCAAGACTGCAGCACCGAATGGGAGAATTGAAAATGTGGTGAACTCGGATGATGGTGTGTCTTATAATTCATCTGCTGGAGAAGTCAAAGAGGAATCCAGTGTCAACTCTGCAAGCAATGGTTTGACCATTGCTAAGGAAAGGGGACCGAAAGTTTCTGTTCAGTCAAAGCAATCCAAAGTGCAGAAGGGTCAAGGTAAGAGTAAGATTGAGAAGCCCCCTAGTCCCAAGAGCGCCTTGCCAATTCGGATGAAGAAAAGCAAAGATGGAAATGATGCAGAGGCTACAGCTACTGTTTCCAATGGTTCAGCAGGTCCAAATTCACTCGCCAAGCAGCCTAACAAGAGTAGATCATTGAATGGCCAACAGCAGCAACCTAAACAATCTGAGGCACCATCAACTGAAGGCCTTGTGGAGGAGACAAATCTGAAGCCACTAAACAAAGGCTCCTATAATAAGGCTGATGGAGACTCCCAATCTTCTTTAAGTCCCACGGAAGGAGAAATGAAAGCACCTAGGGTGGGTACACTGCCAAAGTATGGTTTCAGCTTTAAGTGTGATGAAAGAGCTGAGAAGAGAAGAGAGTTCTACACCAAACTTGAGGAAAAGATACATGCAAAGGAGATGGAGAAGAATAATTTGCAAGCCAAGTCTAAGGAAACTCTAGAAGCTGAGATTAAGATGCTCAGGAAGAAGCTGACTTTTAAAGCAACTCCAATGCCAAGCTTTTATCAGGAGCCTCCGCCTCCTAAGGTGGAGCTAAAGAAGTTACCAACAACAAGAGCCAAGTCTCCCAAGCTCGGCCGCAGGAAGAGCTTACCTCCAGCAGATTCTGAAGGAAACAGTAATACTAAGAGTCAATCTGGCAGGCTTAGTCTGGGTGAGAAACTTCCTCAAAACTCTGCCAAAGGACCTTCTCCTGTGCATCCAAAGAAGCCACAAAGAAAGTCTCTTCCTAGACTTCCGTCTGAGAAGACCACTTTATCTAATGTGAAGAGTGTGCGGAAGGTTACTTCTAAGGCAACAAACGAGGAAAAGGCTGCCGTGTTGCCCAATGCAACAAGTGAAGCTGGACCTCACACCCAAGAGCAGGAGGCAGTTCCCAGAGCTGAGATAACTGAACCCTACAGCCAAGAGCCGGAAGCAGTTCCCAGGGCTGCAATAAGTGAGGAGCAGTCCCATTCAGATGATGAGACAGTTAATGAAGAGGAACATCACCCCACCTTGGTTCAAGAGCCTATAGCGCTGGAGAATTGA

Protein Analysis

458

Amino Acids

49.39

Weight (kDa)

9.1

Isoelectric Point (pI)

54.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPX2 PF06886 222 - 292 4.5e-27 Targeting protein for Xklp2 (TPX2) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 186
Acc36I ACCTGC 1 cut(s) 422
AccB1I GGYRCC 1 cut(s) 511
AccB7I CCANNNNNTGG 1 cut(s) 659
AciI CCGC 4 cut(s) 24, 863, 925, 1123
AcoI YGGCCR 2 cut(s) 481, 922
AcsI RAATTY 1 cut(s) 439
AcuI CTGAAG 4 cut(s) 20, 543, 569, 975
AfaI GTAC 1 cut(s) 646
AfeI AGCGCT 1 cut(s) 1365
AfiI CCNNNNNNNGG 9 cut(s) 30, 535, 617, 641, 659, 920, 1210, 1258, 1345
AgsI TTSAA 4 cut(s) 50, 152, 478, 1352
AjnI CCWGG 1 cut(s) 1271
Alw26I GTCTC 5 cut(s) 533, 582, 915, 1074, 1307
AlwNI CAGNNNCTG 2 cut(s) 413, 953
Aor51HI AGCGCT 1 cut(s) 1365
AoxI GGCC 3 cut(s) 481, 526, 922
ApeKI GCWGC 5 cut(s) 131, 454, 490, 1160, 1277
ApoI RAATTY 1 cut(s) 439
AseI ATTAAT 1 cut(s) 93
Asp700I GAANNNNTTC 1 cut(s) 1266
AspA2I CCTAGG 1 cut(s) 635
AspLEI GCGC 2 cut(s) 356, 1366
AspS9I GGNCC 5 cut(s) 80, 266, 434, 1031, 1193
AsuHPI GGTGA 4 cut(s) 119, 172, 1013, 1328
AvaII GGWCC 5 cut(s) 80, 266, 434, 1031, 1193
AvrII CCTAGG 1 cut(s) 635
AxyI CCTNAGG 1 cut(s) 870
BalI TGGCCA 1 cut(s) 483
BanI GGYRCC 1 cut(s) 511
BbsI GAAGAC 1 cut(s) 1100
BbvI GCAGC 5 cut(s) 143, 466, 502, 1147, 1264
BccI CCATC 5 cut(s) 167, 380, 523, 578, 739
BceAI ACGGC 2 cut(s) 103, 1148
BciT130I CCWGG 1 cut(s) 1273
BcoDI GTCTC 5 cut(s) 533, 582, 915, 1074, 1307
BfaI CTAG 4 cut(s) 342, 636, 785, 1077
BfmI CTRYAG 4 cut(s) 129, 405, 1246, 1359
BfoI RGCGCY 2 cut(s) 357, 1367
BfuAI ACCTGC 1 cut(s) 422
BisI GCNGC 7 cut(s) 24, 132, 455, 491, 925, 1161, 1278
BlnI CCTAGG 1 cut(s) 635
BlsI GCNGC 7 cut(s) 25, 133, 456, 492, 926, 1162, 1279
Bme1390I CCNGG 1 cut(s) 1273
Bme18I GGWCC 5 cut(s) 80, 266, 434, 1031, 1193
BmgT120I GGNCC 5 cut(s) 80, 266, 434, 1031, 1193
BmiI GGNNCC 4 cut(s) 267, 513, 568, 858
BmrFI CCNGG 1 cut(s) 1273
BmsI GCATC 3 cut(s) 385, 792, 1054
BoxI GACNNNNGTC 1 cut(s) 1084
BpiI GAAGAC 1 cut(s) 1100
BplI GAGNNNNNCTC 2 cut(s) 925, 957
BpmI CTGGAG 2 cut(s) 219, 927
Bpu10I CCTNAGC 2 cut(s) 255, 806
BpuEI CTTGAG 1 cut(s) 740
BsaJI CCNNGG 5 cut(s) 612, 635, 1271, 1272, 1344
BsaXI ACNNNNNCTCC 4 cut(s) 91, 121, 551, 581
Bsc4I CCNNNNNNNGG 9 cut(s) 30, 535, 617, 641, 659, 920, 1210, 1258, 1345
Bse118I RCCGGY 1 cut(s) 104
Bse1I ACTGG 1 cut(s) 219
Bse21I CCTNAGG 1 cut(s) 870
Bse3DI GCAATG 2 cut(s) 244, 249
BseBI CCWGG 1 cut(s) 1273
BseDI CCNNGG 5 cut(s) 612, 635, 1271, 1272, 1344
BseGI GGATG 3 cut(s) 175, 375, 1045
BseLI CCNNNNNNNGG 9 cut(s) 30, 535, 617, 641, 659, 920, 1210, 1258, 1345
BseMI GCAATG 2 cut(s) 244, 249
BseMII CTCAG 6 cut(s) 498, 681, 783, 820, 1080, 1221
BseNI ACTGG 1 cut(s) 219
BseRI GAGGAG 2 cut(s) 551, 1304
BseX3I CGGCCG 1 cut(s) 922
BseXI GCAGC 5 cut(s) 143, 466, 502, 1147, 1264
BsgI GTGCAG 1 cut(s) 323
Bsh1285I CGRYCG 1 cut(s) 925
BshFI GGCC 3 cut(s) 483, 528, 924
BshNI GGYRCC 1 cut(s) 511
BsiEI CGRYCG 1 cut(s) 925
BsiSI CCGG 2 cut(s) 105, 1259
BslFI GGGAC 4 cut(s) 279, 330, 594, 1282
BslI CCNNNNNNNGG 9 cut(s) 30, 535, 617, 641, 659, 920, 1210, 1258, 1345
BsmAI GTCTC 5 cut(s) 533, 582, 915, 1074, 1307
BsmFI GGGAC 4 cut(s) 279, 330, 594, 1282
BsnI GGCC 3 cut(s) 483, 528, 924
Bsp143I GATC 1 cut(s) 470
BspACI CCGC 4 cut(s) 24, 863, 925, 1123
BspANI GGCC 3 cut(s) 483, 528, 924
BspCNI CTCAG 6 cut(s) 499, 682, 784, 819, 1081, 1222
BspLI GGNNCC 4 cut(s) 267, 513, 568, 858
BspMAI CTGCAG 1 cut(s) 133
BspMI ACCTGC 1 cut(s) 422
BspQI GCTCTTC 1 cut(s) 926
BspT107I GGYRCC 1 cut(s) 511
BsrDI GCAATG 2 cut(s) 244, 249
BsrFI RCCGGY 1 cut(s) 104
BsrI ACTGG 1 cut(s) 219
BssAI RCCGGY 1 cut(s) 104
BssECI CCNNGG 5 cut(s) 612, 635, 1271, 1272, 1344
BssMI GATC 1 cut(s) 470
BssT1I CCWWGG 2 cut(s) 635, 1344
Bst2UI CCWGG 1 cut(s) 1273
Bst4CI ACNGT 3 cut(s) 415, 965, 1318
Bst6I CTCTTC 6 cut(s) 689, 694, 926, 1077, 1109, 1320
BstC8I GCNNGC 3 cut(s) 235, 765, 989
BstDSI CCRYGG 1 cut(s) 612
BstENI CCTNNNNNAGG 1 cut(s) 533
BstF5I GGATG 3 cut(s) 175, 375, 1045
BstH2I RGCGCY 2 cut(s) 357, 1367
BstHHI GCGC 2 cut(s) 356, 1366
BstKTI GATC 1 cut(s) 473
BstMAI GTCTC 5 cut(s) 533, 582, 915, 1074, 1307
BstMBI GATC 1 cut(s) 470
BstMCI CGRYCG 1 cut(s) 925
BstMWI GCNNNNNNNGC 2 cut(s) 933, 1363
BstNI CCWGG 1 cut(s) 1273
BstNSI RCATGY 1 cut(s) 737
BstPAI GACNNNNGTC 1 cut(s) 1084
BstSCI CCNGG 1 cut(s) 1271
BstSFI CTRYAG 4 cut(s) 129, 405, 1246, 1359
BstV1I GCAGC 5 cut(s) 143, 466, 502, 1147, 1264
BstV2I GAAGAC 1 cut(s) 1100
BstZI CGGCCG 1 cut(s) 922
Bsu36I CCTNAGG 1 cut(s) 870
BsuRI GGCC 3 cut(s) 483, 528, 924
BtgI CCRYGG 1 cut(s) 612
BtsCI GGATG 3 cut(s) 175, 375, 1045
BtsI GCAGTG 1 cut(s) 647
BtsIMutI CAGTG 2 cut(s) 226, 647
BveI ACCTGC 1 cut(s) 422
Cac8I GCNNGC 3 cut(s) 235, 765, 989
CaiI CAGNNNCTG 2 cut(s) 413, 953
CfoI GCGC 2 cut(s) 356, 1366
Cfr10I RCCGGY 1 cut(s) 104
Cfr13I GGNCC 5 cut(s) 80, 266, 434, 1031, 1193
Csp6I GTAC 1 cut(s) 645
CviAII CATG 2 cut(s) 62, 734
CviQI GTAC 1 cut(s) 645
DpnI GATC 1 cut(s) 472
DpnII GATC 1 cut(s) 470
DraI TTTAAA 1 cut(s) 826
EaeI YGGCCR 2 cut(s) 481, 922
EagI CGGCCG 1 cut(s) 922
Eam1104I CTCTTC 6 cut(s) 689, 694, 926, 1077, 1109, 1320
EarI CTCTTC 6 cut(s) 689, 694, 926, 1077, 1109, 1320
EciI GGCGGA 1 cut(s) 852
EclXI CGGCCG 1 cut(s) 922
Eco130I CCWWGG 2 cut(s) 635, 1344
Eco147I AGGCCT 1 cut(s) 528
Eco47I GGWCC 5 cut(s) 80, 266, 434, 1031, 1193
Eco47III AGCGCT 1 cut(s) 1365
Eco52I CGGCCG 1 cut(s) 922
Eco57I CTGAAG 4 cut(s) 20, 543, 569, 975
Eco81I CCTNAGG 1 cut(s) 870
EcoNI CCTNNNNNAGG 1 cut(s) 533
EcoO109I RGGNCCY 1 cut(s) 1031
EcoRII CCWGG 1 cut(s) 1271
EcoT14I CCWWGG 2 cut(s) 635, 1344
ErhI CCWWGG 2 cut(s) 635, 1344
FaeI CATG 2 cut(s) 65, 737
FaiI YATR 7 cut(s) 30, 63, 186, 573, 660, 735, 1361
FalI AAGNNNNNCTT 2 cut(s) 341, 373
FaqI GGGAC 4 cut(s) 279, 330, 594, 1282
FatI CATG 2 cut(s) 61, 733
Fnu4HI GCNGC 7 cut(s) 24, 132, 455, 491, 925, 1161, 1278
FokI GGATG 3 cut(s) 182, 382, 1032
Fsp4HI GCNGC 7 cut(s) 24, 132, 455, 491, 925, 1161, 1278
FspBI CTAG 4 cut(s) 342, 636, 785, 1077
GlaI GCGC 2 cut(s) 355, 1365
GluI GCNGC 7 cut(s) 24, 132, 455, 491, 925, 1161, 1278
GsuI CTGGAG 2 cut(s) 219, 927
HaeII RGCGCY 2 cut(s) 357, 1367
HaeIII GGCC 3 cut(s) 483, 528, 924
HapII CCGG 2 cut(s) 105, 1259
HhaI GCGC 2 cut(s) 356, 1366
Hin1II CATG 2 cut(s) 65, 737
Hin6I GCGC 2 cut(s) 354, 1364
HinP1I GCGC 2 cut(s) 354, 1364
HincII GTYRAC 1 cut(s) 226
HindII GTYRAC 1 cut(s) 226
HindIII AAGCTT 1 cut(s) 844
HinfI GANTC 5 cut(s) 5, 215, 590, 950, 976
HpaII CCGG 2 cut(s) 105, 1259
HphI GGTGA 4 cut(s) 119, 172, 1013, 1328
Hpy166II GTNNAC 3 cut(s) 163, 226, 647
Hpy188I TCNGA 8 cut(s) 10, 169, 369, 508, 549, 955, 1090, 1306
Hpy188III TCNNGA 6 cut(s) 47, 83, 785, 808, 854, 1352
Hpy8I GTNNAC 3 cut(s) 163, 226, 647
HpyAV CCTTC 6 cut(s) 301, 518, 611, 950, 1044, 1120
HpyCH4III ACNGT 3 cut(s) 415, 965, 1318
HpyCH4V TGCA 9 cut(s) 131, 233, 304, 398, 737, 763, 1045, 1178, 1280
HpyF10VI GCNNNNNNNGC 2 cut(s) 933, 1363
Hsp92II CATG 2 cut(s) 65, 737
HspAI GCGC 2 cut(s) 354, 1364
Kzo9I GATC 1 cut(s) 470
LguI GCTCTTC 1 cut(s) 926
LmnI GCTCC 4 cut(s) 572, 856, 877, 1291
Lsp1109I GCAGC 5 cut(s) 143, 466, 502, 1147, 1264
LweI GCATC 3 cut(s) 385, 792, 1054
MaeI CTAG 4 cut(s) 342, 636, 785, 1077
MaeIII GTNAC 2 cut(s) 888, 1129
MalI GATC 1 cut(s) 472
MboI GATC 1 cut(s) 470
MlsI TGGCCA 1 cut(s) 483
MluCI AATT 7 cut(s) 13, 147, 187, 363, 439, 757, 1372
MluNI TGGCCA 1 cut(s) 483
MlyI GAGTC 2 cut(s) 584, 985
Mox20I TGGCCA 1 cut(s) 483
MroXI GAANNNNTTC 1 cut(s) 1266
MscI TGGCCA 1 cut(s) 483
MseI TTAA 6 cut(s) 93, 605, 672, 798, 825, 1320
MslI CAYNNNNRTG 1 cut(s) 1305
Msp20I TGGCCA 1 cut(s) 483
MspI CCGG 2 cut(s) 105, 1259
MspR9I CCNGG 1 cut(s) 1273
MvaI CCWGG 1 cut(s) 1273
MwoI GCNNNNNNNGC 2 cut(s) 933, 1363
NdeII GATC 1 cut(s) 470
NlaIII CATG 2 cut(s) 65, 737
NlaIV GGNNCC 4 cut(s) 267, 513, 568, 858
NmeAIII GCCGAG 1 cut(s) 900
NspI RCATGY 1 cut(s) 737
PasI CCCWGGG 1 cut(s) 1272
PceI AGGCCT 1 cut(s) 528
PciSI GCTCTTC 1 cut(s) 926
PdmI GAANNNNTTC 1 cut(s) 1266
PfeI GAWTC 3 cut(s) 5, 215, 950
PflMI CCANNNNNTGG 1 cut(s) 659
PkrI GCNGC 7 cut(s) 25, 133, 456, 492, 926, 1162, 1279
PleI GAGTC 2 cut(s) 584, 984
PpsI GAGTC 2 cut(s) 584, 984
PpuMI RGGWCCY 1 cut(s) 1031
PshAI GACNNNNGTC 1 cut(s) 1084
PshBI ATTAAT 1 cut(s) 93
PsiI TTATAA 1 cut(s) 186
Psp5II RGGWCCY 1 cut(s) 1031
Psp6I CCWGG 1 cut(s) 1271
PspGI CCWGG 1 cut(s) 1271
PspN4I GGNNCC 4 cut(s) 267, 513, 568, 858
PspPI GGNCC 5 cut(s) 80, 266, 434, 1031, 1193
PspPPI RGGWCCY 1 cut(s) 1031
PstI CTGCAG 1 cut(s) 133
PstNI CAGNNNCTG 2 cut(s) 413, 953
RsaI GTAC 1 cut(s) 646
RsaNI GTAC 1 cut(s) 645
RseI CAYNNNNRTG 1 cut(s) 1305
SapI GCTCTTC 1 cut(s) 926
SaqAI TTAA 6 cut(s) 93, 605, 672, 798, 825, 1320
SatI GCNGC 7 cut(s) 24, 132, 455, 491, 925, 1161, 1278
Sau3AI GATC 1 cut(s) 470
Sau96I GGNCC 5 cut(s) 80, 266, 434, 1031, 1193
SchI GAGTC 2 cut(s) 584, 985
ScrFI CCNGG 1 cut(s) 1273
SfaNI GCATC 3 cut(s) 385, 792, 1054
SfcI CTRYAG 4 cut(s) 129, 405, 1246, 1359
SinI GGWCC 5 cut(s) 80, 266, 434, 1031, 1193
SmiMI CAYNNNNRTG 1 cut(s) 1305
SmlI CTYRAG 1 cut(s) 719
SmoI CTYRAG 1 cut(s) 719
Sse9I AATT 7 cut(s) 13, 147, 187, 363, 439, 757, 1372
SseBI AGGCCT 1 cut(s) 528
SsiI CCGC 4 cut(s) 24, 863, 925, 1123
SspMI CTAG 4 cut(s) 342, 636, 785, 1077
StuI AGGCCT 1 cut(s) 528
StyD4I CCNGG 1 cut(s) 1271
StyI CCWWGG 2 cut(s) 635, 1344
TaaI ACNGT 3 cut(s) 415, 965, 1318
TaqII GACCGA 1 cut(s) 283
TasI AATT 7 cut(s) 13, 147, 187, 363, 439, 757, 1372
TauI GCSGC 2 cut(s) 26, 927
TfiI GAWTC 3 cut(s) 5, 215, 950
Tru1I TTAA 6 cut(s) 93, 605, 672, 798, 825, 1320
Tru9I TTAA 6 cut(s) 93, 605, 672, 798, 825, 1320
TscAI CASTG 2 cut(s) 226, 654
TseI GCWGC 5 cut(s) 131, 454, 490, 1160, 1277
TspDTI ATGAA 5 cut(s) 180, 386, 641, 696, 1338
TspGWI ACGGA 2 cut(s) 629, 1074
TspRI CASTG 2 cut(s) 226, 654
Van91I CCANNNNNTGG 1 cut(s) 659
VpaK11BI GGWCC 5 cut(s) 80, 266, 434, 1031, 1193
VspI ATTAAT 1 cut(s) 93
XagI CCTNNNNNAGG 1 cut(s) 533
XapI RAATTY 1 cut(s) 439
XbaI TCTAGA 1 cut(s) 784
XceI RCATGY 1 cut(s) 737
XmaJI CCTAGG 1 cut(s) 635
XmnI GAANNNNTTC 1 cut(s) 1266
XspI CTAG 4 cut(s) 342, 636, 785, 1077
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.